BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23470.1
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941873 jgi|Araly1|941873|scaffold_602417.1 1181 0.0
> Ahg941873 jgi|Araly1|941873|scaffold_602417.1
Length=949
Score = 1181 bits (639), Expect = 0.0
Identities = 827/917 (90%), Gaps = 16/917 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCTAGTTGAAAACCT-TTTTCTTGAGCCACAATCCAAAAGACGTAAGATCAATCC 59
|||||||| |||||||| || || |||||| |||||||||||||||||||||||| || |
Sbjct 21 ATGTCTCTTGTTGAAAA-CTCTTCTCTTGAACCACAATCCAAAAGACGTAAGATCGATAC 79
Query 60 AGAGACCATAGAGTCTCCGTCTCCTAATTGC-AATCATTGGTTCGTCCGCAATAAGATCT 118
||||| || ||||||||| |||| ||||||| || || |||||||||||||| || ||||
Sbjct 80 AGAGATCAAAGAGTCTCCATCTCGTAATTGCGAA-CACTGGTTCGTCCGCAACAAAATCT 138
Query 119 GTATCTCCTGCTATACAACAGTGGACAATTTCGAAGGCAGATCTTTTGATTATCTCTACA 178
||||||||||| |||||||| ||||||| | ||| || ||||||||||||||||||||||
Sbjct 139 GTATCTCCTGCAATACAACACTGGACAAATACGATGGAAGATCTTTTGATTATCTCTACA 198
Query 179 AAGGGATGCAGATGAGTAACGAAGCTTTAGGTTTTACAAAA-GGGCTCATCTCTCAAACC 237
|||| ||||| |||||| |||||||||||| |||||||||| ||| ||||||||||||||
Sbjct 199 AAGGAATGCATATGAGTCACGAAGCTTTAGTTTTTACAAAACGGG-TCATCTCTCAAACC 257
Query 238 TCTTGGCTTGAAGACAAGAAGCTTCACTTAGTACTTGACTTGGACCAGACGCTTATTCAC 297
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 258 TCTTGGCTTGAAGACAAGAAGCTTCACTTAGTACTTGACTTGGACCACACGCTTGTTCAC 317
Query 298 ACCATTAAAACTTCACTGCTTTATGAATCTGAAAAGTATATAATAGAGGAAGTTGAATCG 357
||||||||| |||||| |||||||||||||||||||| | ||| ||| || |||| ||||
Sbjct 318 ACCATTAAAGCTTCACAGCTTTATGAATCTGAAAAGTGTTTAACAGAAGAGGTTGGATCG 377
Query 358 AGGAAAGATATAAAGAGATTCAACACTGGCTTTCCTGAAGAATCTTTGATAAAGTTGAGA 417
||||||||| || ||||||||||| ||| |||||||| ||||| ||||||||| |||||
Sbjct 378 AGGAAAGATTTATGGAGATTCAACAGTGGGTTTCCTGATGAATCATTGATAAAGCTGAGA 437
Query 418 CCTTTTGTTCACCAGTTTCTGAAAGAATGTAATGAGATGTTCTCTATGTACGTTTACACA 477
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 438 CCTTTTGTTCACCAGTTTCTGAAAGAATGCAATGAGATGTTCTCCATGTATGTTTACACA 497
Query 478 AAGGGTGGTTATGACTATGCTC-GGCTCGTGTTGGAGATGATTGATCCGGACAAGTTTTA 536
|||||||||| ||| ||||||| || | ||||||||| ||||||||||||| ||| ||||
Sbjct 498 AAGGGTGGTTGTGATTATGCTCAGGTT-GTGTTGGAGTTGATTGATCCGGAGAAGATTTA 556
Query 537 CTTTGGCAATCGGGTTATAACGAGAAGAGAGAGTCCTGGTTTTAAGACGCTTGATCTTGT 596
|||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 557 CTTTGGAAATCGGGTTATAACGAGAAGAGAGAGTCCTGATTTGAAGACGCTTGATCTTGT 616
Query 597 GTTGGCTGATGAACGTGGGATTGTGATTGTTGATGATACCAGTAGTGTTTGGCCTCATGA 656
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 617 GTTGGCTGATGAACGTGGGGTTGTGATTGTTGATGATAAGTGTAGTGTTTGGCCTCATGA 676
Query 657 CAAGAAAAACTTGCTGCAGATTGCTAGGTACAAGTATTTTGGAGAC-AAGTCTTGTTTGT 715
||||||||||||||||||||| || | ||||||||||||||||||| || ||||||| |
Sbjct 677 CAAGAAAAACTTGCTGCAGATCGCAAAGTACAAGTATTTTGGAGACCAA-TCTTGTTCAT 735
Query 716 TTTCAGAA-GATAAGAAGAAGATAGATGAGAGTGATGAGAAAGGACCATTGAATACTGCT 774
|||||||| | |||||| |||| |||||||||||| ||||||||||||||| ||| || |
Sbjct 736 TTTCAGAATG-TAAGAATAAGAGAGATGAGAGTGAGGAGAAAGGACCATTGGATATTGTT 794
Query 775 TTGAGATTCCTCAAGGATGTTCACGAA-GAATTCTTCTATGACTGGTCGAAGAAAGACTT 833
|||||||||||||||||||||||| || |||||||||| ||||||||||| |||||||||
Sbjct 795 TTGAGATTCCTCAAGGATGTTCAC-AATGAATTCTTCTGTGACTGGTCGAGGAAAGACTT 853
Query 834 GGATTCAGTGGATGTGAGGCCGTTGCTAAAGGAGATTTCTTTGAGATGGAAGCGTAAAGC 893
|||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct 854 GGATTCAGTGGATGTGAGGCCGTTGCTAAAAGAGATTTCTTCGAGATGGAAGCACAAAGC 913
Query 894 AGACGGT-GTGGTTTGA 909
|| ||| |||||||||
Sbjct 914 GGA-GGTTGTGGTTTGA 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5