BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23480.1
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351368 jgi|Araly1|351368|fgenesh1_pg.C_scaffold_6001961 1182 0.0
> Ahg351368 jgi|Araly1|351368|fgenesh1_pg.C_scaffold_6001961
Length=1815
Score = 1182 bits (640), Expect = 0.0
Identities = 756/812 (93%), Gaps = 7/812 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGATGATAAT-GAGAAAGTGAAAGGTTCGAGTAAAAAGAGGTTGAGAAAACCTAA 59
||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGATGACAATGGA-AAAGTGAAGGGTTCGAGTAAAAAGAGGTTGAGAAAACCTAA 59
Query 60 AAGCTTGGAATTTGTTGGATGGGGTTCGAGAAATCTCATTGAGTTTCTTGAATCACTTGG 119
||| ||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||
Sbjct 60 AAGTTTGGAATTTGTTGGATGGGGTTCGAAAAATCTCATTGAGTTTCTTCAGTCACTTGG 119
Query 120 TAGAGATACCACCAACAAGATATCAGAGAATGATGTTACAGCGATTATAATGAACTATAT 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 120 TAGAGATACCACCAACAAGATATCTGAGAATGATGTTACAGCGATTATAATGAGCTATAT 179
Query 180 CCGCGAGAAGAGCCGTGAAACTCCTTTGAAGAGCAAGAAGAGGAGAAAGACAGTAGCTTG 239
||||||||| | |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 180 CCGCGAGAAAAACCGTGAAACTCCTTCCAAGAACAAGAAGAGGAGAAAGACAGTAGCTTG 239
Query 240 TGATGAGAAGTTGCGTTTGCTTTTCGGTG-CTGGGAAGATAAATGTAATCAAAGTCCCTG 298
||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 240 TGATGAGAAGTTGCGTTTGCTTTTCGG-GACTCAGAAGATAAATGTAATCAAAGTCCCTG 298
Query 299 ATTTGGTAGAGAAGCATTATGTAGAGAATCAGGAGGAAGACTTATTCTATGATGATCTCT 358
||||| |||||||||||||||||||||||||||| | |||| || || |||| |||| |
Sbjct 299 ATTTGATAGAGAAGCATTATGTAGAGAATCAGGA--A-GACTCATACTTTGATTATCTAT 355
Query 359 ACGCTTCAGAGGATGATAAACAACAGAGATTGTCTCTATCAGATAAGGTGGCTAAACAGA 418
|| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 356 ACTCTCCAGAGGATGATAAACAACAGAGATTGTCTCCATCAGATAAGGTGGCTAAACAGA 415
Query 419 CGAAACAGGTTGTGTCAAAGCCTAGAGGGACTTTTGCTGCAATAGTGCGTGATACTGTTA 478
|||||||||||||||||||||||| ||| ||||||||||| |||||||| |||| ||| |
Sbjct 416 CGAAACAGGTTGTGTCAAAGCCTAAAGGTACTTTTGCTGCGATAGTGCGCGATAATGTCA 475
Query 479 AGCTTCTGTATTTGAGAAAGAGTTTAGTCCAGGAACTAGCAAAGACTCCTGAAACTTTTG 538
||| |||||||| |||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 476 AGCGCCTGTATTTAAGAAAGAGTTTAGTCCAGGAACTAGCAAAGTCACCTGAAACTTTTG 535
Query 539 AGAGCAAAGTGGTGAGGACTTTTGTGAGGATCAAGAATCCTTGTCAGCTTGTTCATGTAA 598
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 536 AGAGTAAAGTGGTGGGGACTTTTGTGAGGATCAAGAATCCTTGTCAGCTTGTTCACGTGA 595
Query 599 CCGGTGTGAAGGAAGGAGATCCGATTGATGGTAATCTTTTTCAGGTTACAAATTATTCGT 658
| ||||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 596 CAGGTGTGAAGGAGGGAAATCTGATTGATGGTAATCTTCTTCAGGTTACAAATTATTCGT 655
Query 659 ATTATCTAAAAGATGTTACTACCTCTTCCCTATCAGATGATGATTTCTCTCAGGAGGAAT 718
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ATTATCTAAAAGATGTTACGACCTCTTCCCTATCAGATGATGATTTCTCTCAGGAGGAAT 715
Query 719 GCGAAGAATTGCATCAGAGAATAAATAATGGCTTTGCTAAGAGACTTACAGTTGTTGATA 778
| |||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 716 GTGAAGAACTGCATCAAAGAATAAATAATGGCTTTGCTAAGAGACTTACAGTTGTGGATA 775
Query 779 TGGAAGAAAAGGCTCGAAGTTTGCATGAAGAT 810
||||||||||||||||||||||||||||||||
Sbjct 776 TGGAAGAAAAGGCTCGAAGTTTGCATGAAGAT 807
Score = 1098 bits (594), Expect = 0.0
Identities = 825/931 (89%), Gaps = 38/931 (4%)
Strand=Plus/Plus
Query 811 TATCTGGAGAAGAGGGAGCTTCTTCAGAATCCGGATGAACAGAAGAGGCTAGTGGATGAA 870
|||||||| || ||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 895 TATCTGGAAAAAAGGGAGCTTCTTCAGAATCCGGAAGAACAGTTGAGGCTATTGGATGAA 954
Query 871 GTTCCAGAAATTGTTGCAGAAGAACTTGAACCTGAATGTGAAGATGATGATGATGATAGG 930
|| ||||||||||| ||||||||||||||||||||||||| |||||||||| | | | |
Sbjct 955 GTACCAGAAATTGTGGCAGAAGAACTTGAACCTGAATGTGTAGATGATGAT-A-G--A-G 1009
Query 931 ACAATAGAAGATAG-CCTCATTGTACCAAACCCTGAGGCTCATCAAAGTGACAAAGAGCA 989
| ||||||| || | ||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1010 A-AATAGAAAAT-GACCTCATTGTACCAAACCCTGAGGCTCATCAAAGTGACGAAGAACA 1067
Query 990 ACGACAAAGAGATTTACCAGTTTCTTCTAGTGTCAAGAAAAGTCAAGAAAATTCCTTGCT 1049
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1068 ACGACGAAGAGATTCACCAGTTTCTTCTAGTGTCAAGAAAAGTCTAGAAAATTCCAAGCT 1127
Query 1050 TCTTAAGAATCCGGAAGAGCAGTTGAGGCTGCTGTGTGATGTTCCCGATGTTGTTGCAGA 1109
|||||||||||| ||||| |||||||||||| || |||| ||||| || |||||||||||
Sbjct 1128 TCTTAAGAATCCAGAAGAACAGTTGAGGCTGTTGCGTGAAGTTCCTGAAGTTGTTGCAGA 1187
Query 1110 AAAACTTGAACCTGAGTTTGTAGATGATGAT-GGAAAACTAGTAAATGACGCT-ACCGTA 1167
| ||||||||||||||||||||||| ||||| |||||| ||| ||||||| | | ||||
Sbjct 1188 AGAACTTGAACCTGAGTTTGTAGATAATGATGGGAAAA-TAGAAAATGAC-TTCATCGTA 1245
Query 1168 CCAAACCCTGAAGCCTTCACTGAGGCGCATCAAAGTGATGAAGAAATACAACCAAGTGAT 1227
||||||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||
Sbjct 1246 CCAAACCCTGAGGCCTTCACTGAGGCTCATCAAAGTGATGAAGAAAAACAACTAAGTGAC 1305
Query 1228 TTACCAGATTCTAG--T--AT----C-C-AG-AAA-----A-CT-C----T--AGAAGAC 1263
| |||||||||||| | || | | || ||| | || | | |||||||
Sbjct 1306 TCACCAGATTCTAGTATCCATAAAACTCTAGAAAATTCCGAGCTCCGTGATGGAGAAGAC 1365
Query 1264 CAGCCAATATGGACTGCTTCTGCAGGTAATAAAGATCTCCATGAAGATGTGTACGAGCCG 1323
||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1366 CAGCCAATACAGACTGCTTCTGCAGGTAACAAGGATCTCCATGAAGATGTGTACGAGCCG 1425
Query 1324 CCAGCAAATGGCATAACACTGAACACGGACTCTATCACTGAAGGAGAAATGAATACCAAA 1383
||| |||||||||| |||| ||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1426 CCAACAAATGGCATCACACAGAACAAGGACTCTATCACTAAAGGAGAAATGAATACCAAA 1485
Query 1384 GTCAGTCAGCATCAGTCAAGTACTCCAGTGATTGATCTCTCTAACAAAACTCAAGCACAC 1443
||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 1486 GTCAGTCAGTATCAGTCAAGTACTCCAGTGATTGATCTCTCTAACCAACCTCAAGCTCAA 1545
Query 1444 TCAAATCCAATTGAGATTATTGAATTGAGCGATGATGATGA-CGACGACGAAAAGGACAA 1502
||||||||| | |||||||| ||||||||||||||||| | || || || ||||||||
Sbjct 1546 TCAAATCCACTAGAGATTATCGAATTGAGCGATGATGA-CAGTGATGATGACAAGGACAA 1604
Query 1503 AAACGATCAAGCTTACCAGAGTTATGATCCAAAGAAGGTGATGTGGTTCTATGAATACCC 1562
| |||||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 1605 GGATGATCAAGCTTACCAGAACTATGATCCAAAGAAGGTAATGTGGTTCTATGAATTCCC 1664
Query 1563 TAAAGGAAAAACACATGGACCATTCTCTCTCACAGATCTCAAAACGTGGAGTGACGAAGA 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 TAAAGGAAAAACACATGGACCATTCTCTCTCACAGATCTCAAAACGTGGAGTGACGAAGA 1724
Query 1623 GTACTTTGTTGGAGTTCCAGATTTCAAAGTATGGAAGACAGGAGAGAGTGCAGTGCTACT 1682
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1725 GTACTTTGTTGGAGTTCCAGATTTCAAAGTATGGAAAACAGGAGAGAGTGCAGTGTTACT 1784
Query 1683 AACCAAACTTCTATCTCAGATCAAAACCTAA 1713
||||||||||||||||| ||||||||||||
Sbjct 1785 GACCAAACTTCTATCTCATATCAAAACCTAA 1815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68943343450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5