BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23490.1
Length=2712
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489211 jgi|Araly1|489211|fgenesh2_kg.6__2345__AT5G23490.1 4013 0.0
Ahg894233 jgi|Araly1|894233|Al_scaffold_0006_2229 918 0.0
Ahg899815 jgi|Araly1|899815|Al_scaffold_0004_465 555 8e-157
> Ahg489211 jgi|Araly1|489211|fgenesh2_kg.6__2345__AT5G23490.1
Length=2673
Score = 4013 bits (2173), Expect = 0.0
Identities = 2537/2707 (94%), Gaps = 48/2707 (2%)
Strand=Plus/Plus
Query 15 aaaaaCTGATTGAGACAGAGAGA-AGAAAGATTGCTTGAAGAAGACGAAGACAAAAGGAG 73
||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct 1 AAAAACTGATTGAGACAGACAGAGAGAAAGATTGCTTGAAGAAGACGAAGAC-AAAGGAG 59
Query 74 GAAACTTTCTTCTCATTTCAATTAAAAAATCCAtttttttCTCTGGGTTTTTCTTTCTCA 133
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 60 GAAACTTTCTTCTCATTTCAATTAAAAAACCCATTTTTTTCTCTGGGTTTTTCTTTCTCA 119
Query 134 TGTGATTGTGTAATTGATTCTTATCGTTTTCTCGCAATCATTACGGCTTCTTCTGAAATC 193
|||||||| | ||||| ||||||||||||||||||| ||||||| | | |||| |||||
Sbjct 120 TGTGATTGCGCAATTGCTTCTTATCGTTTTCTCGCAGTCATTAC--CAT-TTCTCAAATC 176
Query 194 AACACGCTCAATTTCCTTCCTTGGAAAATTTTGGGGTTTTGGTTTTGTTCCTGTTTCATT 253
||||||||||||||||||||| |||||| |||||| ||||||||||||||||
Sbjct 177 AACACGCTCAATTTCCTTCCTCGGAAAA--------TTTTGG--TTGTTCCTGTTTCATT 226
Query 254 CGTGTGAGATTTGATTACTTAAGCGCTCAGATGAAATCATGATAATTAAGAAGCACAAGA 313
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 227 CGTGTGAGATTTGATTACTTAAACGCTCAGATGAAGTCATGATAATTAAGAAGCACAAGA 286
Query 314 GAGAGGAAATT--A-GAGTCCTTTGGTCAA-TTTATTGGGGAACTTGATTGGGATTTAGT 369
||||| ||||| | ||||||||||||||| ||| |||||| | ||| ||||||||||||
Sbjct 287 GAGAGAAAATTAGAGGAGTCCTTTGGTCAAGTTT-TTGGGG-ATTTGGTTGGGATTTAGT 344
Query 370 CAGCTTCAAAGTGAGGAGCTGAAGATGGAGAATGGCCATGAGGAAAGATTGGCGGAGAGA 429
| ||||| |||||||||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 345 CTGCTTCGAAGTGAGGAGCTGAAGATGGAGAACGGCCACGAGGAGAGATTGGCCGAGAGA 404
Query 430 TTTTCCGGATTGGGT-TTCGAAGATTCTTCTCTTTTGCCTGAGAACGAGTTTAAGAACGA 488
||||||||| ||||| || ||||||| ||||| || | ||||||||||||||||||||||
Sbjct 405 TTTTCCGGAGTGGGTCTT-GAAGATTATTCTCGTTCGGCTGAGAACGAGTTTAAGAACGA 463
Query 489 CAACTTGTTTCAGGTCATCAAAGCTGTTGAAGCAGCAGAAACCACCATCAAGGAGCAGGT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CAACTTGTTTCAGGTCATCAAAGCTGTTGAAGCAGCAGAAACCACCATCAAGGAGCAGGT 523
Query 549 GGAAGAGAATAGCCGATTAAAAGCTGAACTTCAGCGAAGTGCTCTGGAATTGGCTAAATA 608
||| ||||||| ||||||||| |||||||||||| |||||||||||||| |||| |||||
Sbjct 524 GGAGGAGAATACCCGATTAAAGGCTGAACTTCAGAGAAGTGCTCTGGAACTGGCCAAATA 583
Query 609 TAAATCAGATGAATCCTTGCCCCAAACTTCTAATATCGGAGATCACACAAATTCTACCAC 668
|||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct 584 TAAATCAGATGAATTCTTACCCCAAACTTCTAATCTCGGAGATCACTCAAATTCTACCAC 643
Query 669 TGTGTCCCGCCTGGTTCACCAGCCAGTTGACTGGAAG-CCAGT-T-GTGATCAAAGCTTC 725
||||||| ||||||||||||||||||||||||||||| ||| | ||| ||||||||||
Sbjct 644 TGTGTCCAGCCTGGTTCACCAGCCAGTTGACTGGAAGAAGAGTGTGGTGGTCAAAGCTTC 703
Query 726 AGATGCTGATTCATCAGGCTTGCTGGTTGTTCACCCCCATGTGAATGCTAATGGTGAAGA 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 704 GGATGCTGATTCATCAGGCTTGCTGGTTGTTCACCCCCATGTGAATGCTAATGGTGCAGA 763
Query 786 AGCTACTGTGAGTAATCGTTTTGAAAGCCATTCTG-AAGAAACTATAAGTAATGGCACTG 844
|||||||||||||||||||||||||||||| |||| | |||| |||| |||||||| ||
Sbjct 764 AGCTACTGTGAGTAATCGTTTTGAAAGCCACTCTGCAGGAAA-AATAATTAATGGCATTG 822
Query 845 TTAAAAGAGCTATAGATGGTACTGGTCCCTCTCAATTCGATTCGTCAATATCTCCTATGA 904
| | | ||| |||||||||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct 823 TCAGAGGAGATATAGATGGTGCTGGTCCCTCTCAATTTGATTCGTCATTATCTCCTATGA 882
Query 905 GAATGCGATTGGAGGGAGAGCATGACGCACACTTCAGTTCGTCTACTCATGGATCTATGC 964
||||||| ||||| |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 883 GAATGCGGTTGGAAGGAGAGCATGTGGCACACGTCAGTTCGTCTACTCATGGATCTATGC 942
Query 965 CAGTTGGTGAAGTAAATCATTCAGGCAATGCATGGAAGCAGGACCTCATTCACAAGGTCC 1024
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 CATTTGGTGAAGTAAATCATTCAGGCAATGCATGGAAGCAGGACCTCATTCACAAGGTCC 1002
Query 1025 AGGAGCAGGAACAAGAAATTTCGCAGTTG-AGAAGATATCTTACTGACTGTTCTGTTAAG 1083
||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 1003 AGGAGCAGGAACAAGAAATTTCGCACTTGAAGAA-ATATCTTACTGACTGTTCTGTTAAG 1061
Query 1084 GAAGCCCAAATTCGCAATGAAAAATATGTTCTGGAAAAGAGAATTGCCTACATGCGTCTG 1143
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1062 GAAGCCCAAATTCGCAATGAAAAATATGTTCTGGAAAAGCGAATTGCCTACATGCGTCTG 1121
Query 1144 GCATTTGATCAACAGCAACAAGATCTTGTTGATGCTTCATCAAAAGCTCTCTCTTACAGA 1203
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1122 GCATTTGATCAACAGCAACAAGATCTTGTTGATACTTCATCAAAAGCTCTCTCTTACAGA 1181
Query 1204 CAAGAGATAATTGAAGAAAATATACGCCTAACATATGCCTTACAGGCTACACAGCAAGAA 1263
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1182 CAAGAGATAATTGAGGAAAATATACGCCTAACATATGCCTTACAGGCTACACATCAAGAA 1241
Query 1264 AGATCTACATTTGTATCATACTTGTTACCTCTTTTATCAGAGTATTCTCTGCAACCACAG 1323
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1242 AGATCTACATTTGTATCATACTTGTTACCTCTGTTATCGGAGTATTCTCTGCAACCACAG 1301
Query 1324 GTTTCTGATGCTCAGTCTATTGTCAGCAATGTGAAGGTTTTGTTTAAGCATCTACAAGAA 1383
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1302 GTTTCTGATGCTCAGTCTATTGTTAGCAATGTGAAGGTTCTGTTTAAGCATCTACAAGAA 1361
Query 1384 AAGCTCCTTCTTACTGAGACAAAGTTGAAGGAGTCGGAATATCAGTTAGCACCATGGCAG 1443
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 1362 AAGCTCCTTCTTACTGAGACAAAGTTGAAGGAGTCAGAATATCAATTAGCACCTTGGCAG 1421
Query 1444 TCAGATGTGAACCACTCAAATGATTCCCCTTTGGCTCCATCGCGCTCAGCTGGTGTGGCA 1503
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1422 TCAGATGTGAACAACTCAAATGATTCCCCTTTGGCTCCATCGCGCTCAGCTGGTGTAGCA 1481
Query 1504 TTAACCCACTCCACAAAAGATTCCATGTATTCTCATGATCACACAGCCATAGACTGGAAT 1563
||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 1482 TTAACCCACTCCACAAAGGTTTCCGTGTATTCTCATGATCACACAGCCATAGACTGGAAT 1541
Query 1564 TTGGAGCGCCAGCAGCAAGATGAGCCAGGTAGCTCAGCTGTGAGGAATTACCATCTTGAT 1623
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1542 TTGGAGCGCCAGCAGCAAGATGAGCCAAGTAGCTCAGCTGTGAGGAATTACCATCTTGAT 1601
Query 1624 GATTCTAGTACGTTTTCACCTCTTGAAAACAGTCAGTCGGCAGCCTTTGAGATGCATGTG 1683
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1602 GATTCTAGTACGTTTTCACCTCTTGTGAACAGTCAGTCGGCAGCCTTTGAGATGCATGTG 1661
Query 1684 CAACCAGGTACCAGCGTGGACGAATCTCCTGCTCAT-AAGAAAGTAGACGAAACTCCACC 1742
||||||||||| || || |||||||||||||||| | |||||||||||||||||||||||
Sbjct 1662 CAACCAGGTACGAGTGTAGACGAATCTCCTGCTC-TGAAGAAAGTAGACGAAACTCCACC 1720
Query 1743 TAAGCATGTCCAGTTTCTTGAGCCTATCAGCAAGACGGTGGTCGACGATGCTCAAAATCC 1802
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1721 TAAGCATGTTCAGTTTCTTGAGCCTATCAGCAAGACGGTGGTCGACGATGCCCAAAATTC 1780
Query 1803 ATCATATGGGTCTGCGTTTGATGACCCAAGCTCCTCAAATTCTCCTCTTTTGTCCCCAGT 1862
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1781 ATCATATAAGTCTGCGTTTGATGACCCAAGCTCCTCAAATTCTCCTCTTTTGTCCCCAGT 1840
Query 1863 TTTTGAAGAACCTTCTTCCTCCTTTTCTGAGGGTGGAGATGATGACCCGTTACCAGGTAT 1922
||||||||||||| |||||||||||||||| | ||| ||||||||||||||||||| |||
Sbjct 1841 TTTTGAAGAACCTCCTTCCTCCTTTTCTGACGATGGGGATGATGACCCGTTACCAGCTAT 1900
Query 1923 AGAGGACCTCCAAATTTCAGGAGAACCTTATCCTGGACATGAACTTCAGGCTTGTGGTTA 1982
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1901 AGAGGACCTCCAAATTTCAGGAGAACCTTATCCTGGATATGAACTTCAGGCTTGTGGTTA 1960
Query 1983 CTCCATTAATGGAACAACAAGTTGTAATTTTGAGTGGGTCTGTCACCTAGAAGATGGATC 2042
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1961 CTCCATTAATGGAACGACAAGTTGTAATTTTGAGTGGGTATGTCATCTAGAAGATGGATC 2020
Query 2043 TGTGAATTACATTGATGGAGCAAAGCAGCCAAATTACCTTGTCACTGCTGATGATGTTGA 2102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2021 TGTGAATTACATTGATGGAGCAAAGCAGCCAAATTACCTTGTCACTGCTGATGATGTTGA 2080
Query 2103 TTTATATCTTGCTATTGAGGTTCAGCCTTTGGATGACAGGAACCGAAAGGGGGAGCTTGT 2162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2081 TTTATATCTTGCTATTGAGGTTCAGCCTTTGGATGACAGGAACCGAAAGGGGGAGCTTGT 2140
Query 2163 GAAGGTTTTTGCCAATGATAACCGCAAGATTGCTTGCCATCCAGATATGCAGAGCAATAT 2222
||||||||||||||||||||| |||||||| |||||| |||||| ||||| ||||||||
Sbjct 2141 GAAGGTTTTTGCCAATGATAATCGCAAGATCACTTGCCTTCCAGAGATGCAAAGCAATAT 2200
Query 2223 AGAGAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCTTGCGGTTGGCTTCGT 2282
||||||||||||||||||||||||||||||||||||| || | | || | | |
Sbjct 2201 AGAGAAGACTCTTCATACTGGTCATGCTTCATACAAAA---CT---G-GTTT--C--C-T 2248
Query 2283 GGATATATGGGAAGCAGCAACATTATCTATTAAGAGAGAAGGTTACAGCATCAAGTGTAT 2342
|||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2249 GGATATATGGGAAGAAGCTACGTTATCTATTAAGAGAGAAGGTTACAGCATCAAGTGTAA 2308
Query 2343 TAGTGATCTCACAATTGCAGAAAAGTTCTCAGCATCTACTACTGTAACCATTCCGTTTGG 2402
|| |||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||
Sbjct 2309 TAATGATCTCACAATTGCAGAAAAGTTCTCAGCTTCTACTGCTGTAACAATTCCGTTTGG 2368
Query 2403 GCAACCGGCAGAACTTGTTATCATTGGTTCTGATGGTAGTGAACATTCCTTACGAGCAGA 2462
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2369 ACAACCGGCAGAACTTGTTATCATTGGTTCTGATGGTAGTGAGCATTCCTTACGAGCAGA 2428
Query 2463 TAATGGATCGCCAGACCTTATCGGCTCAAGAGATGAAATAGTACTCACCCTGAGATTATT 2522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2429 TAATGGATCGCCAGACCTTATCGGCTCAAGAGATGAAATAGTACTCACCCTGAGATTATT 2488
Query 2523 TATCAAGAGGGCTCTGCAGAGGAAGAAGGGAAAGAAGAGAGTATTTTTGTTTAACAAATG 2582
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2489 TATCAAGAGGGCTCTGCAGAGAAAGAAGGGAAAGAAGAGAGTATTTTTGTTTAACAAATG 2548
Query 2583 AGACTTGGTATATAATAtttttttGGCTCTCTTACTTTTGTCAGCTGCAAATCAATTAGA 2642
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 2549 AGACTTGGTATATAATATTTTTTTGGCTCTGTGGCTTTTGTCAGCTGCAAATCAATTAGA 2608
Query 2643 GATAAGGACTT-GTGACACAATTCATTCAT-ATGAAAAGTCAATCTTTGTTTATATAAAA 2700
||| ||||||| | ||||||||| |||||| | ||||| |||||||||||||||||||||
Sbjct 2609 GATGAGGACTTAG-GACACAATTTATTCATGA-GAAAAATCAATCTTTGTTTATATAAAA 2666
Query 2701 CCCCCAC 2707
||||||
Sbjct 2667 GCCCCAC 2673
> Ahg894233 jgi|Araly1|894233|Al_scaffold_0006_2229
Length=762
Score = 918 bits (497), Expect = 0.0
Identities = 586/630 (93%), Gaps = 2/630 (0%)
Strand=Plus/Plus
Query 1902 TGATGACCCGTTACCAGGTATAGAGGACCTCCAAATTTCAGGAGAACCTTATCCTGGACA 1961
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 TGATGACCTTTTACCAGCTATAGAGGACCTCCAAATTTCAGGAGAACCTTATCCTGGACA 143
Query 1962 TGAACTTCAGGCTTGTGGTTACTCCATTAATGGAACAACAAGTTGTAATTTTGAGTGGGT 2021
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 144 TGAACTTCAGGCTTGTGGTTACTCCATTAATGGAACTACAAGTTGTAACTTTGAGTGGGT 203
Query 2022 CTGTCACCTAGAAGATGGATCTGTGAATTACATTGATGGAGCAAAGCAGCCAAATTACCT 2081
|||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 204 ATGTCGTCTAGAAGATGGAACTGTGAATTACATTGATGGAGCAAAACAGCCAAATTACCT 263
Query 2082 TGTCACTGCTGATGATGTTGATTTATATCTTGCTATTGAGGTTCAGCCTTTGGATGACAG 2141
| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 264 TATCACTGCTGATGATGTTGGTTTATATCTTGCTATTGAGGTTCACCCTTTGGATGACAG 323
Query 2142 GAACCGAAAGGGGGAGCTTGTGAAGGTTTTTGCCAATGATAACCGCAAGATTGCTTGCCA 2201
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 324 GAACCGAAAGGGGGAGCTTGTCAAGGTTTTTGCCAATGATAATCGCAAGATCGCTTGCCA 383
Query 2202 TCCAGATATGCAGAGCAATATAGAGAAGACTCTTCATACTGGTCATGCTTCATACAAAGT 2261
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 384 TCCAGATATGCAGAGCAATATAGACAAGACTCTTCATACTGGTCATGCTTCATACAAAGT 443
Query 2262 TTCTCTTGCGGTTGGCTTCGTGGATATATGGGAAGCAGCAACATTATCTATTAAGAGAGA 2321
|| ||||||| || ||| |||||| |||||||||||| || |||||||||||||| ||
Sbjct 444 TTTTCTTGCGACGGGTTTCCTGGATAAATGGGAAGCAGCTACGTTATCTATTAAGAGGGA 503
Query 2322 AGGTTACAGCATCAAGTGT-ATTAGTGATCTCACAATTGCAGAAAAGTTCTCAGCATCTA 2380
|||||||| |||||||||| || | ||||||||||||||||||||| |||||||| ||||
Sbjct 504 AGGTTACACCATCAAGTGTGATAA-TGATCTCACAATTGCAGAAAATTTCTCAGCTTCTA 562
Query 2381 CTACTGTAACCATTCCGTTTGGGCAACCGGCAGAACTTGTTATCATTGGTTCTGATGGTA 2440
|| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 563 CTGCTGTAAAAATTCCGTTTGGGAAACCGGCAGAACTTGTTATCATTGGTTCTGATGGTA 622
Query 2441 GTGAACATTCCTTACGAGCAGATAATGGATCGCCAGACCTTATCGGCTCAAGAGATGAAA 2500
|||| ||||| ||||||||||| ||||||| | |||||||| |||| |||||||||||||
Sbjct 623 GTGAGCATTCTTTACGAGCAGAGAATGGATTGACAGACCTTGTCGGGTCAAGAGATGAAA 682
Query 2501 TAGTACTCACCCTGAGATTATTTATCAAGA 2530
||||||||||||||||||||||||||||||
Sbjct 683 TAGTACTCACCCTGAGATTATTTATCAAGA 712
> Ahg899815 jgi|Araly1|899815|Al_scaffold_0004_465
Length=699
Score = 555 bits (300), Expect = 8e-157
Identities = 435/494 (88%), Gaps = 33/494 (7%)
Strand=Plus/Plus
Query 2004 TTGTAATTTTGAGTGGGTCTGTCACCTAGAAGATGGATCTGTGAATTACATTGATGGAGC 2063
|||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 207 TTGTGATTTTCAGTGGGTATGTCATCTAGAAGATGGATCTGTGAATTACATTGATGGAGC 266
Query 2064 AAAGCAGCCAAATTACCTTGTCACTGCTGATGATGTTGATTTATATCTTGCTATTGAGGT 2123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 267 AAAGCAGCCAAATTACCTTGTCACTGCTGATGATGTTCATTTATATCTTGCTATTGAGGT 326
Query 2124 TCAGCCTTTGGATGACAGGAACCGAAAGGGGGAGCTTGTGAAGGTTTTTGCCAATGATAA 2183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 327 TCAGCCTTTGGATGACAGGAACCGAAAGGGGGAGCTTGTGAAGGTTTTTGCCAATAATAA 386
Query 2184 -C-C-----GCAAGATTGCTTGCC-A-TCCAGAT---AT----GCAG----AG-----CA 2218
| | ||||||| ||||||| | ||| | || |||| || ||
Sbjct 387 TCGCAATTCGCAAGATCGCTTGCCTAATCCTCTTTTTATTTTCGCAGTTCCAGAGATGCA 446
Query 2219 -A----TATAGAGAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCTTGCGGT 2273
| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 447 GAGCAATATAGAGAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCATG-GGA 505
Query 2274 -TGGCTTCGTGGATATATGGGAAGCAGCAACATTATCTATTAAGAGAGAAGGTTACAGCA 2332
||| ||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 506 CTGGTTTCCTGGATATATGGGAAGCAGCTACGTTATCTATTAAGAGAGAAGGTTACAGCA 565
Query 2333 TCAAGTGTATTAGTGATCTCACAATTGCAGAAAAGTTCTCAGCATCTACTACTGTAACCA 2392
||||||||| || | |||||||||||||||||||||||||||| |||||| || |||| |
Sbjct 566 TCAAGTGTAATAATAATCTCACAATTGCAGAAAAGTTCTCAGCTTCTACTGCTATAACAA 625
Query 2393 TTCCGTTTGGGCAACCGGCAGAACTTGTTATCATTGGTTCTGATGGTAGTGAACATTCCT 2452
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 626 TTCCGTTTGGGCAACCAGCAGAACTTGTTATCATTGGTTCTGATGGTAGTGAGCATTCCT 685
Query 2453 T-ACGAGCAGATAA 2465
| || |||||||||
Sbjct 686 TTACAAGCAGATAA 699
Score = 97.1 bits (52), Expect = 6e-19
Identities = 52/52 (100%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1927 GACCTCCAAATTTCAGGAGAACCTTATCCTGGACATGAACTTCAGGCTTGTG 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 GACCTCCAAATTTCAGGAGAACCTTATCCTGGACATGAACTTCAGGCTTGTG 211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102310398070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5