BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23520.1
Length=1799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941877 jgi|Araly1|941877|scaffold_602421.1 1995 0.0
Ahg489211 jgi|Araly1|489211|fgenesh2_kg.6__2345__AT5G23490.1 62.1 1e-08
> Ahg941877 jgi|Araly1|941877|scaffold_602421.1
Length=1351
Score = 1995 bits (1080), Expect = 0.0
Identities = 1263/1352 (93%), Gaps = 9/1352 (1%)
Strand=Plus/Plus
Query 232 ATCACTAGTTCGGTATAAAGATGTCATGGATGAAAGGTAAATCATCTGGTTGGACTGCGT 291
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCACTAGTTCGATACAAAGATGTCATGGATGAAAGGTAAATCATCTGGTTGGACTGCGT 60
Query 292 TTGATCTCAAGCAGAGACAGAAACAAGGTCTTGAAAGTGAGGTC---GAGGGTGATCCAT 348
||||||||||||||||||||||||||||||||||||| | |||| || | ||||||||
Sbjct 61 TTGATCTCAAGCAGAGACAGAAACAAGGTCTTGAAAGCGTGGTCAAAGATGATGATCCAT 120
Query 349 TCCCACCTGTTTCAACTAGTGTTAATGCATCCTTTGGTGTAAGAGGACGGTTGAGAAGAA 408
|||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 121 TCCCACCTGTCTCAACTAGTGTTAATGCATCCTTAGGTGTAAGAGGAAAGTTGAGAAGAG 180
Query 409 ACCATGAACCTTCTGAAAAGTCTTTTTCGTCCGTGCTCTTGCCTCCTTCGAGATTTCCGG 468
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
Sbjct 181 ACCATGAACCTTCTGAAAAGTCTTTTTCGTCCGTGCTCTTACCTCCTTTGAGATTTCCCG 240
Query 469 CATTGACAGAGAATAAGGATTGCGGAAACCAAGAACGAGGGGGTTGTTGT-AGAAGAAAG 527
|||||||||||||||| |||||||||||| |||||||||| || ||||| || |||||
Sbjct 241 CATTGACAGAGAATAAAGATTGCGGAAACGAAGAACGAGGTGGAGGTTGTAAG-AGAAAA 299
Query 528 CCGGA-CACTTTGAGTCTCCCGGTAAACAGTCATGATTTAGCCTTCACGAAGCTGAAGGA 586
|| || | ||| || ||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 300 CC-GAGCGCTTCGATTCTGCCGGTAAACAGTCATGATTCAGCCTTCATGAAGCTGAAGGA 358
Query 587 AATGAACAGCTGGGCGGATGATAACTTAATAAGGGATGTATTGTTATCCACAGAGGATGA 646
||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| |
Sbjct 359 AATGAACAGCTGGGCGGATGATAACTTGATAAGGGATGTATTGTTATCCACCGAAGATAA 418
Query 647 TTTTGAAATGGCCTTAGCTTTTTTGAAAGGAATGGTTTCTTCTGGTAAGGAGGATGAGGA 706
|||||| |||||||||| ||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 419 TTTTGAGATGGCCTTAGATTTTTTGAAAGGAATGGTTTCTTCTAGTAAGGAAGCTGAGGA 478
Query 707 GCCAACTTCAAAGATTGAGGGGTATTCATCCGATAACAGAAGATCGGAATATAGAACATT 766
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||
Sbjct 479 GCCAACTTCTAAGATTGAGGGTTATTCATCCGATAACAGAAGATCCGAATATAAAACATT 538
Query 767 TGAGAAAACAGTTACAAGTTCGGTGAAGATGGCTGCAAGGTCCACATTTGAGGATGCTGG 826
|| |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 539 TGGGAAAACTGTTACAAGTTCAGTGAAGATGGCTGCAAGGTCCACATGTGAGGATGCTGG 598
Query 827 CAAGTATGATCTGGAAAATAGTGATGGAAGCTCGTTTCTGGTCAATGCATCTGACAATGA 886
|||||| ||| || || | ||||||||||| | | |||||| ||||||||||||| |||
Sbjct 599 CAAGTACGATTTGCAAGAGAGTGATGGAAGTTTGCCTCTGGTGAATGCATCTGACAGTGA 658
Query 887 AAAGTTCCCTGATGATATTTCTGAACTAGATAGTATCATTCAGCGGCTTCAGTCCATTCC 946
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAAGTTCTCTGATGATATCTCTGAACTAGATAGTATCATTCAGCGGCTTCAGTCCATTCC 718
Query 947 GATAGAACCTGAATGGGAAGAAGATGATCTATACTTGAGTCATCGAAAGGATGCGCTGAA 1006
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 719 TATAGAACCTGAATGGGAAGAAGATGATCTCTACTTGAGTCATCGAAAGGATGCACTGAA 778
Query 1007 AGTGATGAGATCAGCCTCAAACCATTCAAGAGCTGCCCAAAATGCTTTTCAGAGATATGA 1066
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AATGATGAGATCAGCCGCAAACCATTCAAGAGCTGCCCAAAATGCTTTTCAGAGATATGA 838
Query 1067 TCATGCTTCTGCCAAGCAGCATTCAGATAAAGCAAGAGAGGACTGGTTAGCAGCTGAGAA 1126
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 839 TCATGCTTCTGCCAAGCAGCATTCAGAGAAAGCAAGAGAGGACTGGTTAACAGCTGAGAA 898
Query 1127 GCTAAATGCTGAAGCGGCCAAGAAGATCATAGGTATAACAAATAAGGATAATGACATATG 1186
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 899 GCTAAATGCTGAGGCGGCCAAGAAGATCATAGGTATAACAAATAAGGATAACGACATATG 958
Query 1187 GAAGTTGGACCTGCATGGTCTCCATGCCACAGAAGCTGTTCAAGCCTTACAAGAACGTTT 1246
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 959 GAAGTTGGACCTGCATGGTCTCCATGCAACAGAAGCTGTCCAAGCGTTACAAGAACGTTT 1018
Query 1247 GCAAATGATTGAAGGTCACTTTACTGTGAACCGTTCAGTATCACCAAATAGAGGTAGGTC 1306
||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GCAAAAGATCGAAGGTCACTTCACTGTGAACCGTTCAGTATCACCAAATAGAGGTAGGTC 1078
Query 1307 AAAGAATGCAGCTCTGCGATCTGCATCACAAGAGCCTTTTGGTAGATTAGATGAGGAAGG 1366
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1079 GAAGAATGCAGCTCTGCGATCTGCATCACAAGAGCCTTTTGGTAGATTAGATGTGGAAGG 1138
Query 1367 CATGCACTGTCAAAGAACTTCTTCTAGAGAACTGA-GAAACTCATTGCAGGTTATAACAG 1425
||||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||
Sbjct 1139 CATGCACTGTCAAAGAACTTCTTCTAGGGAACT-ACGAAACTCATTGCAGGTTGTAACAG 1197
Query 1426 GTATTGGTAAACACAGTCGCGGACAGGCTTCACTTCCTCTAGCCGTGAAGACATTCTTTG 1485
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1198 GTATTGGTAAACACAGTCGCGGACATGCTTCACTTCCTCTAGCCGTGAAGACATTCTTTG 1257
Query 1486 AAGATAACAGGTATAGGTTTGACGAGACAAGGCCAGGAGTTATCACAGTGCGGCCTAAAT 1545
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1258 AAGATAACAGGTATAGGTTTGACGAGACAAGGCCAGGAGTTATCACAGTTCGGCCTAAAT 1317
Query 1546 TCCGACACAGCTGAAAATTTGTTTGATCTCAA 1577
|||||||| ||||||| |||| ||||||||||
Sbjct 1318 TCCGACACTGCTGAAACTTTGATTGATCTCAA 1349
> Ahg489211 jgi|Araly1|489211|fgenesh2_kg.6__2345__AT5G23490.1
Length=2673
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Minus
Query 1761 GTGGGGCTTTTATATAAACAAAGATTGAttttt 1793
|||||||||||||||||||||||||||||||||
Sbjct 2673 GTGGGGCTTTTATATAAACAAAGATTGATTTTT 2641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67534004385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5