BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23530.1
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489214 jgi|Araly1|489214|fgenesh2_kg.6__2348__AT5G23530.1 1605 0.0
> Ahg489214 jgi|Araly1|489214|fgenesh2_kg.6__2348__AT5G23530.1
Length=1349
Score = 1605 bits (869), Expect = 0.0
Identities = 1014/1084 (94%), Gaps = 10/1084 (1%)
Strand=Plus/Plus
Query 54 aaaaaaaaaaaTGGCGACAGATTCTCAACCAAACCAAAAGCTAACGCTTCCGTTAAAAAC 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAAAAATGGCGACAGATTCTCAACCAAACCAAAAGCTAACGCTTCCGTTAAAAAC 60
Query 114 AAGAATCGCTCTCACCGTTATCTCCACCATGACCGATAACGCTCAACGTCCTGACGGAAC 173
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 61 AAGAATCGCTCTCACCGTTATTTCCACCATGACCGATAACGCTCAACGTCCCGACGGAAC 120
Query 174 TATCAACCGCCGTTTCCTCCGCCTCTTCGATTTCCGTGCTCCTCCCAATCCTAAACCCGT 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 CATCAACCGCCGTTTCCTCCGCCTCTTCGATTTCCGTGCTCCTCCCAATCCTAAACCTGT 180
Query 234 CAACAT-CGTCTCCACCTCCGATTTCGTCGTGGATCAATCCCGTGATCTCTGGTTCCGAT 292
|||| | |||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 CAAC-TCCGTCTCCACCACCGATTTCGTCGTGGATCAATCTCGTGATCTCTGGTTCCGAT 239
Query 293 TGTACACTCCACATGTCTCCGGCGATAAAATCCCCGTCGTTGTTTTCTTCCACGGCGGTG 352
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTACACTCCACACGTCTCCGGCGATAAAATCCCCGTCGTTGTTTTCTTCCACGGCGGTG 299
Query 353 GTTTCGCTTTCCTCAGTCCTAATGCGTATCCTTACGATAATGTATGCCGGAGATTCGCTA 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTTTCGCTTTCCTCAGTCCTAATGCGTATCCTTACGATAATGTATGCCGGAGATTCGCTA 359
Query 413 GGAAATTACCTGCTTATGTCATCTCCGTTAACTACCGTCTCGCTCCGGAGCATCGTTATC 472
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 360 GGAAATTACCTGCTTACGTCATCTCCGTTAACTACCGTCTCGCTCCAGAGCATCGTTATC 419
Query 473 CTGCTCAATACGACGACGGTTTCGATGCTTTGAAGTA-CATCGAGGAGAATCACGGTTCG 531
||||||||||||||||||| | |||||||||||||| | |||||||||||||||| |
Sbjct 420 CTGCTCAATACGACGACGGATACGATGCTTTGAAGTTTC-TCGAGGAGAATCACGGCAAG 478
Query 532 ATTCTTCCGGCGAACGCTGATCTCTCGAGATGCTTCTTCGCCGGAGACAGTGCAGGTGGA 591
|||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 479 GTTCTTCCGGCGAACGCTGATCTGTCGAGATGCTTCTTCGCCGGAGACAGCGCTGGTGGA 538
Query 592 AACATCGCGCACAACGTCGCGATTCGAATTTGTCGCGAGCCGCGGTCATCTTTCACCGCC 651
|||||||| |||||||||||| |||||||||| || ||||||||| || ||||||||||
Sbjct 539 AACATCGCTCACAACGTCGCGGTTCGAATTTGCCGTGAGCCGCGGGGATGTTTCACCGCC 598
Query 652 GTGAAACTCATCGGACTTATCTCGATTCAACCTTTCTTCGGCGGAGAAGAGAGAACGGAA 711
||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 599 GTGAAACTCATCGGACTCATATCGATCCAACCTTTCTTCGGCGGAGAAGAGAGAACGGAG 658
Query 712 GCGGAGAAACAACTCGTCGGAGCTCCTTTGGTTTCACCGGACCGAACAGATTGGTGCTGG 771
|||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 659 GCGGAGAAACGTCTCGTCGGAGCTCCTCTGGTTTCGCCGGACCGAACAGATTGGTGCTGG 718
Query 772 AAAGCGATGGGATTAAACCGGGATCATGAAGCGGTTAACGTCGGCGGACCAAACGCGGTT 831
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAAGCGATGGGATTACACCGGGATCATGAAGCGGTTAACGTCGGCGGACCAAACGCGGTG 778
Query 832 GATATATCGGGTCTGGATTATCCGGAGACGATGGTGGTAGTAGCTGGGTTTGATCCGTTA 891
|||||||||| |||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 779 GATATATCGGATCTGGAGTATCCGGAGACGATGGTGGTTGTTGCTGGGTTTGATCCGTTA 838
Query 892 AAAGATTGGCAGAGAAGTTACTACGAGTGGTTAAAGTTATGCGGTAAAAAAGCAACGTTA 951
|||||||||| |||||||||||||||||| ||||||||| ||| |||| ||||||||||
Sbjct 839 CAAGATTGGCAAAGAAGTTACTACGAGTGGATAAAGTTATCCGGGAAAAGAGCAACGTTA 898
Query 952 ATCGAATATCCAAACATGTTTCATGCGTTTTACATTTTCCCTGAATTGCCTGAGGCGGGT 1011
||||| |||||||||||||||||||| ||||| ||||| |||||||| || ||| |||||
Sbjct 899 ATCGAGTATCCAAACATGTTTCATGCTTTTTATATTTTTCCTGAATTACCGGAGTCGGGT 958
Query 1012 CAGTTAATTATGCGGATTAAGGATTTTGTTGATGAGCGCGTGGCTTCGCTCTCCGCTTAA 1071
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 959 CAGTTAATTATGCGGATTAAGGATTTTGTTGCTGAGCGCGTGGCTTCACTCTCCGCTTAA 1018
Query 1072 TCACCTTCGCTAATGATGGATAT-TTAAATTAGCTC-A--A--TGAATAATAATGTATTA 1125
||||| ||| |||| |||||| | |||||||||||| | | | |||||||||||||||
Sbjct 1019 TCACCATCGATAATAATGGATTTGTTAAATTAGCTCGATTAAATTAATAATAATGTATTA 1078
Query 1126 AGCT 1129
||||
Sbjct 1079 AGCT 1082
Score = 259 bits (140), Expect = 4e-68
Identities = 247/292 (85%), Gaps = 34/292 (12%)
Strand=Plus/Plus
Query 1175 TCTATTTTCATTATTAATCAAGTGTTCAACTTTAAGTGAATGTTTGGGTTGGTTATTAAA 1234
||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct 1083 TCTGTTTTCATTATTAATCAAATGTTCAACTTTAAGTGAA---------T-G----TAAA 1128
Query 1235 CTTGTTTTAAAGCTTGTGAGACGTGGGGTTTTTGTACTTGTAGTAAAATACCAATGTTGG 1294
||||||||||||| | ||||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 1129 CTTGTTTTAAAGC-T-TGAGACGTGGGATTTTTGAACTTGTAGTAAAATACAAATGTTGG 1186
Query 1295 TTTCATTATAGACTATAGTCAGGTTTGTTGTACTTATT--A--TACGAGTGGGGATACAA 1350
|||| || ||||||||||||||||||||||||| | ||||||| || ||||||
Sbjct 1187 TTTC---AT----TATAGTCAGGTTTGTTGTACTTATTAAAGGTACGAGT-GGAATACAA 1238
Query 1351 AACAATGGAATTGATTATTTGTACGGTGAGATTCAACAATACCGG----TAGGTGAGTGA 1406
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1239 AACAATGGAATTGATTATTTGTACGGTGAGATTCAGCAATACCGGCGGGTAGGTGAGTGA 1298
Query 1407 CT-ATGTCTATCCCTTAAGTTTGGTGAAAAGTGAGCCACATTTAATGCATTT 1457
| | ||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1299 GTGA-GTCCATCCCTTTAGTTTGGTGAAAAGTGAGCCACAGTTAATGCATTT 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55040404025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5