BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23535.1
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481308 jgi|Araly1|481308|fgenesh2_kg.4__368__AT5G23535.1 822 0.0
Ahg351372 jgi|Araly1|351372|fgenesh1_pg.C_scaffold_6001965 754 0.0
> Ahg481308 jgi|Araly1|481308|fgenesh2_kg.4__368__AT5G23535.1
Length=643
Score = 822 bits (445), Expect = 0.0
Identities = 574/634 (91%), Gaps = 17/634 (3%)
Strand=Plus/Plus
Query 169 AGCTATGGGCTGGAAAGCTGCTGAGAAACTCATCAGACACTGGAAGATACTTCGAGGAGA 228
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2 AGCCATGGGTTGGAAAGCTGCTGAGAAACTCATCAGACACTGGAAGATACTTCGAGGGGA 61
Query 229 CAATGTAATGATAATTCGTGGGAAAGATAAGGGTGAGACTGGAACCATAAAGCGTGTCAT 288
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 62 TAATGTAATGATAATTCGTGGCAAAGATAAGGGTGAGACTGGAACCATAAAGCGCGTCAT 121
Query 289 TCGATCCCAAAATCGTGTCATCGTTGAAGGGAAGAATCTGATCAAGAAACATATAAAGGG 348
|||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 122 CCGATCCCAAAATCGTGTCATTGTTGAAGGAAAGAATCTGATCAAGAAGCATATAAAGGG 181
Query 349 AGGCCCTGATCACGAAGGTGGAATTTTCACTGTAGAGGCTCCTCTTCACGCCTCAAATGT 408
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 182 AGGCCCTGATCATGAAGGTGGCATTTTCACTGTAGAGGCTCCTCTTCACGCCTCTAATGT 241
Query 409 CCAAGTTGTTGATCCTGTCACTGGGAGGCCTTGTAAGGTTGGTGTAAAATACCTAGAAGA 468
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 242 CCAAGTTGTTGATCCAGTCACTGGGAGGCCTTGTAAGGTTGGTGTCAAGTACCTAGAGGA 301
Query 469 TGGAACAAAAGTAAGAGTAGCCAGAGGCACTGGCACATCTGGTTCCATAATTCCCCGACC 528
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 302 TGGAACAAAAGTAAGAGTAGCCAGAGGCACTGGCACATCTGGTTCCATCATTCCTCGCCC 361
Query 529 AGAGATTCTAAAGATAAGGGCAACGCCGCGACCCACAACTGCTGGCCCTAAGGACACACC 588
|||||||||||||||||||| || || ||||||||||||||||||| |||||||||||
Sbjct 362 TGAGATTCTAAAGATAAGGGCTACACCAAGACCCACAACTGCTGGCCCCAAGGACACACC 421
Query 589 AATGGAGTTTGTCTGGGAGCAGACATATGATGCTAAAACTGGAAAGGGCATGCCTGATCT 648
|||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 422 AATGGAGTATGTCTGGGAGCAGACATATGATGCTAAAACAGGAAAGGGGATGCCTGATCT 481
Query 649 TTGAGTTGAAACCTCTCTACAGTTTCGTTTGGAAAATGTTGCCTGCTCTCAAAAAGGATT 708
|||| |||| ||||| |||||||||||| |||||||||| | | ||
Sbjct 482 CTGAGCTGAAGCCTCTTTACAGTTTCGTTCCAAAAATGTTGC--G-----A-------TT 527
Query 709 CTTCTTTTTCCCATCCATTAGAGTTTGATTTCGGTCTAGAGCTGTGAGGTTTTGTTGGA- 767
|||| ||||||||||||||| |||||||||| |||| |||||||||||| ||||||| |
Sbjct 528 CTTCGTTTTCCCATCCATTATAGTTTGATTTGGGTCAAGAGCTGTGAGGCTTTGTTGAAA 587
Query 768 GAACCTTTGATCATG-ACTGAAACGGAGTCGTTT 800
|||||||||||| || | ||||||||||||||||
Sbjct 588 GAACCTTTGATCCTGGA-TGAAACGGAGTCGTTT 620
> Ahg351372 jgi|Araly1|351372|fgenesh1_pg.C_scaffold_6001965
Length=480
Score = 754 bits (408), Expect = 0.0
Identities = 456/480 (95%), Gaps = 0/480 (0%)
Strand=Plus/Plus
Query 173 ATGGGCTGGAAAGCTGCTGAGAAACTCATCAGACACTGGAAGATACTTCGAGGAGACAAT 232
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGTTGGAAAGCTGCTGAGAAACTCATCAGACACTGGAAGATACTTCGAGGGGACAAT 60
Query 233 GTAATGATAATTCGTGGGAAAGATAAGGGTGAGACTGGAACCATAAAGCGTGTCATTCGA 292
|| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 61 GTGATGATAATTCGAGGGAAAGATAAGGGTGAGACTGGAACCATAAAGCGCGTCATCCGA 120
Query 293 TCCCAAAATCGTGTCATCGTTGAAGGGAAGAATCTGATCAAGAAACATATAAAGGGAGGC 352
|||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||
Sbjct 121 TCCCAAAATCGTGTTATTGTTGAAGGGAAGAATTTGATCAAGAAGCATATAAAGGGAGGC 180
Query 353 CCTGATCACGAAGGTGGAATTTTCACTGTAGAGGCTCCTCTTCACGCCTCAAATGTCCAA 412
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 181 CCTGATCACGAAGGTGGAATTTTCACGGTAGAGGCTCCTCTTCATGCCTCAAATGTCCAA 240
Query 413 GTTGTTGATCCTGTCACTGGGAGGCCTTGTAAGGTTGGTGTAAAATACCTAGAAGATGGA 472
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 241 GTTGTTGATCCAGTCACTGGGAGGCCTTGTAAGGTTGGTGTAAAGTACCTAGAGGATGGA 300
Query 473 ACAAAAGTAAGAGTAGCCAGAGGCACTGGCACATCTGGTTCCATAATTCCCCGACCAGAG 532
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 301 ACAAAAGTAAGAGTAGCCAGAGGCACAGGCACATCTGGTTCCATAATTCCTCGACCAGAG 360
Query 533 ATTCTAAAGATAAGGGCAACGCCGCGACCCACAACTGCTGGCCCTAAGGACACACCAATG 592
||||||||||||||||| || || ||||||| |||||||||||||||||||||||||||
Sbjct 361 ATTCTAAAGATAAGGGCTACTCCAAGACCCACTACTGCTGGCCCTAAGGACACACCAATG 420
Query 593 GAGTTTGTCTGGGAGCAGACATATGATGCTAAAACTGGAAAGGGCATGCCTGATCTTTGA 652
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GAGTTTGTCTGGGAGCAAACATATGATGCTAAAACAGGAAAGGGCATGCCTGATCTTTGA 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33243183624
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5