BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23550.1 Length=980 Score E Sequences producing significant alignments: (Bits) Value Ahg489217 jgi|Araly1|489217|fgenesh2_kg.6__2351__AT5G23550.1 1358 0.0 > Ahg489217 jgi|Araly1|489217|fgenesh2_kg.6__2351__AT5G23550.1 Length=905 Score = 1358 bits (735), Expect = 0.0 Identities = 872/932 (94%), Gaps = 33/932 (4%) Strand=Plus/Plus Query 17 CATTGCGTAATTTTGCAGAGAAGATCCAACCATACTTCAGTTCTACTGTCACAATTTGAG 76 ||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 1 CATGGCGTAATTTTGCAGAGAAGATCCAACCATACTTGAGTTCTGCTGTCACAATTTGAG 60 Query 77 AAGAAGAAGCGTGAGATCTGATCACTAGAACTAGGAAGAAAGAGCTTAGACTACAGAAAG 136 ||||||||||||||||||||| || ||| || | | || | || | |||| Sbjct 61 AAGAAGAAGCGTGAGATCTGA--GCT----CTA--AA-ACA-AG----G--TA-A-AAAG 102 Query 137 AGGACTTACAGAGATGGATAAAATGAATCAGGCTATTGAGAAGATGAAGATGTTGGTTGG 196 | | ||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 103 A-G-CTT--AGAGATGGATAAGATGAATCAGGCTTTTGAGAAGATGAAGATGTTGGTTGG 158 Query 197 TATGGAGGTTGAAGACGAGCAACAAGCTGCTGATGAAGAAAGCTCGCTCTCATTCATGGA 256 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 159 TATGGAGGTTGAAGACGAGCAACAAGCTGCTGAAGAAGAAAGCTCGCTCTCATTCATGGA 218 Query 257 AGATCTTAATCGCAATTGCGCTTTAACTACCAAACAGAGATTTTATGGCTTTGCAATTTG 316 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 219 AGATCTTAATCGCAATTGCGCTTTAACCACCAAACAGAGATTCTATGGCTTTGCAATTTG 278 Query 317 CTTGTCAGCAGGTTTGACCTGTACACTTTTGTCGATGCTTGTTTTCTTTAATCCGGTCAA 376 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 279 CTTGTCAGCAGGCTTGACCTGTACACTTTTGTCGATGCTTGTTTTCTTTAATCCAGTCAA 338 Query 377 GTTTGGCATCACATTCACTCTGGGAAATTTGATGGCACTCGGGAGCACAGCATTCCTTAT 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 339 GTTTGGCATCACATTCACTCTGGGAAATTTGATGGCACTCGGGAGCACAGCATTCCTTAT 398 Query 437 AGGCCCACAGCGGCAGGTGACTATGATGCTTGACCCAGCTCGTATCTACGCTACTGCATT 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 399 AGGCCCACAGCGGCAGGTGACTATGATGCTTGACCCAGCTCGTATCTACGCTACTGCATT 458 Query 497 GTATCTAGCAAGCATTATCATTGCCTTGTTTTGTGCTCTTTATGTTCGCAACAAGCTTCT 556 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 459 GTATCTAGCAAGCATTATCATTGCCTTGTTTTGTGCTCTTTATGTTCGTAACAAGCTTCT 518 Query 557 GACACTGCTGGCTATCATTCTTGAGTTCACTGGTCTAATTTGGTATAGCTTGAGCTACAT 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 GACACTGCTGGCTATCATTCTTGAGTTCACTGGTCTAATTTGGTATAGCTTGAGCTACAT 578 Query 617 CCCTTTTGCAAGAACCATGGTCTCAAAGATCTTCATGACTTGTTTTGACACCGAGTTTTA 676 |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 579 CCCTTTTGCAAGGACCATGGTCTCAAGGATCTTCATGACTTGTTTTGACACCGAGTTTTA 638 Query 677 AGCTACAGTTTACACACATCAGGTCAAAGATTTCTTGTTCCAAAACCTTGATGCTCTGGC 736 ||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 639 AGCAACAGTATACACA--TCAGGTCAAAGATTTCTTGTTCCAAAACCTTGATGCTCTGGT 696 Query 737 TGAACGATTGGTC-AA-TCTCCTCCAAATGTGTTCAAAGCAGGACTTGTTTGATGCACCG 794 ||||||||||||| || |||| |||||||||||||||||| ||||||||||||||||||| Sbjct 697 TGAACGATTGGTCCAACTCTC-TCCAAATGTGTTCAAAGCTGGACTTGTTTGATGCACCG 755 Query 795 -GTAACGTGCCATGCCCTTTATGGCTTATAATTGCCTCTTTACATCAAGTTCAC-GTCTT 852 | ||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| Sbjct 756 AG-AACGTGCCATGCCCTATATGGCTTATAATTGCCTCTTTACATCAAGTTC-CTGTCTT 813 Query 853 CACAAATCCTAGCACAGTTTTTT-GTATATTT-GCTGTGGAACTTAACGTAGATTTGGAT 910 |||||||||||||||||||||| |||||||| |||||| |||||||| |||||||||| Sbjct 814 TACAAATCCTAGCACAGTTTTTTTGTATATTTTGCTGTGAAACTTAACATAGATTTGGAA 873 Query 911 GTTATTGCTGTTTGCTACAAAATTAAGATGTT 942 || |||||||||| ||||||||||||||||| Sbjct 874 GTGGTTGCTGTTTGTTACAAAATTAAGATGTT 905 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36407385735 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5