BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23550.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489217 jgi|Araly1|489217|fgenesh2_kg.6__2351__AT5G23550.1 1358 0.0
> Ahg489217 jgi|Araly1|489217|fgenesh2_kg.6__2351__AT5G23550.1
Length=905
Score = 1358 bits (735), Expect = 0.0
Identities = 872/932 (94%), Gaps = 33/932 (4%)
Strand=Plus/Plus
Query 17 CATTGCGTAATTTTGCAGAGAAGATCCAACCATACTTCAGTTCTACTGTCACAATTTGAG 76
||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1 CATGGCGTAATTTTGCAGAGAAGATCCAACCATACTTGAGTTCTGCTGTCACAATTTGAG 60
Query 77 AAGAAGAAGCGTGAGATCTGATCACTAGAACTAGGAAGAAAGAGCTTAGACTACAGAAAG 136
||||||||||||||||||||| || ||| || | | || | || | ||||
Sbjct 61 AAGAAGAAGCGTGAGATCTGA--GCT----CTA--AA-ACA-AG----G--TA-A-AAAG 102
Query 137 AGGACTTACAGAGATGGATAAAATGAATCAGGCTATTGAGAAGATGAAGATGTTGGTTGG 196
| | ||| |||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 103 A-G-CTT--AGAGATGGATAAGATGAATCAGGCTTTTGAGAAGATGAAGATGTTGGTTGG 158
Query 197 TATGGAGGTTGAAGACGAGCAACAAGCTGCTGATGAAGAAAGCTCGCTCTCATTCATGGA 256
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 159 TATGGAGGTTGAAGACGAGCAACAAGCTGCTGAAGAAGAAAGCTCGCTCTCATTCATGGA 218
Query 257 AGATCTTAATCGCAATTGCGCTTTAACTACCAAACAGAGATTTTATGGCTTTGCAATTTG 316
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 219 AGATCTTAATCGCAATTGCGCTTTAACCACCAAACAGAGATTCTATGGCTTTGCAATTTG 278
Query 317 CTTGTCAGCAGGTTTGACCTGTACACTTTTGTCGATGCTTGTTTTCTTTAATCCGGTCAA 376
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 279 CTTGTCAGCAGGCTTGACCTGTACACTTTTGTCGATGCTTGTTTTCTTTAATCCAGTCAA 338
Query 377 GTTTGGCATCACATTCACTCTGGGAAATTTGATGGCACTCGGGAGCACAGCATTCCTTAT 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GTTTGGCATCACATTCACTCTGGGAAATTTGATGGCACTCGGGAGCACAGCATTCCTTAT 398
Query 437 AGGCCCACAGCGGCAGGTGACTATGATGCTTGACCCAGCTCGTATCTACGCTACTGCATT 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 AGGCCCACAGCGGCAGGTGACTATGATGCTTGACCCAGCTCGTATCTACGCTACTGCATT 458
Query 497 GTATCTAGCAAGCATTATCATTGCCTTGTTTTGTGCTCTTTATGTTCGCAACAAGCTTCT 556
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 459 GTATCTAGCAAGCATTATCATTGCCTTGTTTTGTGCTCTTTATGTTCGTAACAAGCTTCT 518
Query 557 GACACTGCTGGCTATCATTCTTGAGTTCACTGGTCTAATTTGGTATAGCTTGAGCTACAT 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GACACTGCTGGCTATCATTCTTGAGTTCACTGGTCTAATTTGGTATAGCTTGAGCTACAT 578
Query 617 CCCTTTTGCAAGAACCATGGTCTCAAAGATCTTCATGACTTGTTTTGACACCGAGTTTTA 676
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 579 CCCTTTTGCAAGGACCATGGTCTCAAGGATCTTCATGACTTGTTTTGACACCGAGTTTTA 638
Query 677 AGCTACAGTTTACACACATCAGGTCAAAGATTTCTTGTTCCAAAACCTTGATGCTCTGGC 736
||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 639 AGCAACAGTATACACA--TCAGGTCAAAGATTTCTTGTTCCAAAACCTTGATGCTCTGGT 696
Query 737 TGAACGATTGGTC-AA-TCTCCTCCAAATGTGTTCAAAGCAGGACTTGTTTGATGCACCG 794
||||||||||||| || |||| |||||||||||||||||| |||||||||||||||||||
Sbjct 697 TGAACGATTGGTCCAACTCTC-TCCAAATGTGTTCAAAGCTGGACTTGTTTGATGCACCG 755
Query 795 -GTAACGTGCCATGCCCTTTATGGCTTATAATTGCCTCTTTACATCAAGTTCAC-GTCTT 852
| ||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 756 AG-AACGTGCCATGCCCTATATGGCTTATAATTGCCTCTTTACATCAAGTTC-CTGTCTT 813
Query 853 CACAAATCCTAGCACAGTTTTTT-GTATATTT-GCTGTGGAACTTAACGTAGATTTGGAT 910
|||||||||||||||||||||| |||||||| |||||| |||||||| ||||||||||
Sbjct 814 TACAAATCCTAGCACAGTTTTTTTGTATATTTTGCTGTGAAACTTAACATAGATTTGGAA 873
Query 911 GTTATTGCTGTTTGCTACAAAATTAAGATGTT 942
|| |||||||||| |||||||||||||||||
Sbjct 874 GTGGTTGCTGTTTGTTACAAAATTAAGATGTT 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5