BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23570.1
Length=2145
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489218 jgi|Araly1|489218|fgenesh2_kg.6__2352__AT5G23570.1 2974 0.0
> Ahg489218 jgi|Araly1|489218|fgenesh2_kg.6__2352__AT5G23570.1
Length=2022
Score = 2974 bits (1610), Expect = 0.0
Identities = 1925/2068 (93%), Gaps = 57/2068 (3%)
Strand=Plus/Plus
Query 89 AAAATGAGTTCTAGGGCTGGTCCAATGTCTAAGGAAAAGAACG--T-TCAGGGTGGTTAT 145
|||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| |
Sbjct 1 AAAATGAGTTCTAGGGCTGGTCCAATGTCTAAGGGAAAGAACGTTTCTCAGGGTGGTTCT 60
Query 146 AGGCCTGAGGTTGAACAGTTGGTTCAAGGTTTGGCAGGGACGAGACTGGCTTCTTCACAA 205
| ||||||||||||||||||||| |||||||||| ||||||| ||||||| ||||||||
Sbjct 61 AAGCCTGAGGTTGAACAGTTGGTGAAAGGTTTGGCTGGGACGAAACTGGCTCCTTCACAA 120
Query 206 GATGATGGAGGAGAGTGGGAGGTCATTTCCAAGAAGAACAAGAACAAACCAGGAAACACT 265
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 121 GATGATGGAGGAGAATGGGAGGTCATTTCCAAGAAGAACAAGAACAAACCTGGTAACACT 180
Query 266 TCTGGAAAAACTTGGGTTTCTCAGAATTCGAATCCTCCTAGAGCTTGGGGTGGTCAGCAG 325
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 TCTGGAAAAGCTTGGGTTTCTCAGAATTCGAACCCTCCTAGAGCTTGGGGTGGTCAGCAA 240
Query 326 CAAGGGAGAGGTAGCAACGTATCTGGGAGAGGAAACAATGTATCCGGGAGAGGTAACGGC 385
||||||||||||| ||||| | | | | | ||||||||||| |||
Sbjct 241 CAAGGGAGAGGTAACAACG----T-----A-G---C------T--GGGAGAGGTAATGGC 279
Query 386 AATGGTCGGGGCATTCAAGCTAACATATCTGGTCGGGGACGAGCGTTGAGCAGAAAGTAT 445
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 280 AATGGTCGGGGCACTCAAGCTAACATATCTGGTCGGGGACGAGCGTTGAGCAAAAAGTAT 339
Query 446 GATAACAACTTTGTGGCACCCCCACCTGTATCTCGCCCTCCTTTGGAAGGAGGATGGAAT 505
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 340 GATAACCACTTTGTGGCACCCCCACCTGTAACTCGCCCTCCTTTGGAAGGTGGATGGAAT 399
Query 506 TGGCAGGCAAGAGGAGGTTCTGCTCAGCACACAGCTGTGCAGGAGTTTCCTGACGTGGAG 565
|||||||||||||||||||||||||||||||||| |||||||||| ||||| || |||||
Sbjct 400 TGGCAGGCAAGAGGAGGTTCTGCTCAGCACACAGTTGTGCAGGAGGTTCCTAACATGGAG 459
Query 566 GATGATGTGGATAATGCTTCTGAGGAAGAGAATGATTCCGATGCTTTGGATGATTCTGAT 625
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 GATGATCTGGATAATGCTTCTGAGGAAGAGAATGATTCCGATGCTTTGGATGATTCTGAT 519
Query 626 GACGACCTTGCAAGTGATGATTATGACTCGGATGTGAGTCAAAAGAGCCATGGATCACGA 685
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 520 GACGATCTTGCAAGTGATGATTATGACTCGGATGTGAGTCAACAGAGCCATGGATCACGA 579
Query 686 AAGCAGAATAAGTGGTTCAAAAAGTTCTTTGGCAGCTTGGATAGCTTGTCGATCGAGCAG 745
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 580 AAGCAGAATAAGTGGTTCAAAAAGTTCTTCGACAGCTTGGATAGCTTGTCGATCGAGCAG 639
Query 746 ATAAATGAACCACAGAGGCAGTGGCATTGTCCAGCTTGTCAGAACGGACCTGGTGCCATC 805
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 ATAAATGAACCGCAGAGGCAGTGGCATTGTCCAGCTTGTCAGAACGGACCTGGTGCCATC 699
Query 806 GATTGGTATAACCTGCACCCTCTACTAGCTCATGCGAGGACAAAAGGAGCTAGGCGAGTT 865
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GACTGGTATAACCTGCACCCTCTACTAGCTCATGCGAGGACAAAAGGAGCTAGGCGAGTT 759
Query 866 AAGCTCCATAGAGAATTGGCTGAAGTTTTAGAAAAGGATCTACAGATGAGAGGCGCATCT 925
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 760 AAGCTCCATAGAGAATTGGCTGAAGTTTTAGAAAAGGATCTAGAGATGAGAGGCGCATCT 819
Query 926 GTCATTCCTTGTGGTGAGATTTATGGGCAGTGGAAGGGTTTGGGTGAGGATGAAAAGGAT 985
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 820 GTCATTCCTTGTGGTGAGATTTATGGGCAGTGGAAGGGTTTGGGTGAGGACGAGAAGGAT 879
Query 986 TATGAAATTGTCTGGCCTCCAATGGTCATCATCATGAATACTAGACTGGATAAGGACGAT 1045
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 880 CATGAAATTGTCTGGCCTCCAATGGTCATCATCATGAATACTAGACTGGACAAGGACGAT 939
Query 1046 AACGATAAGTGGCTCGGCATGGGCAACCAAGAGCTGCTGGAATACTTCGACAAGTATGAG 1105
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AATGATAAGTGGCTCGGCATGGGCAACCAAGAGCTGCTGGAATACTTCGACAAGTATGAG 999
Query 1106 GCTCTTAGAGCACGCCATTCCTATGGTCCACAGGGCCATCGTGGGATGAGTGTTCTGATG 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 GCTCTTAGAGCACGCCATTCCTATGGTCCACAGGGCCATCGTGGGATGAGTGTTCTGATG 1059
Query 1166 TTTGAGAGCAGTGCCACTGGCTATTTGGAGGCCGAACGCCTCCACCGGGAGTTAGCTGAG 1225
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1060 TTTGAGAGCAGTGCCACTGGCTATTTGGAGGCTGAACGCCTCCACCGGGAGTTAGCTGAG 1119
Query 1226 ATGGGGTTAGATAGAATTGCCTGGGGTCAGAAG-CGCAGTATGTTTTCTGGAGGTGTTCG 1284
| ||||||||||||| ||||||| || | | ||| ||||||||||||||||||||||
Sbjct 1120 ACAGGGTTAGATAGAAACGCCTGGGTTC-GTCGGCGCGGTATGTTTTCTGGAGGTGTTCG 1178
Query 1285 CCAACTGTATGGCTTCCTTGCAACGAAGCAAGATCTGGACATATTCAATCAACACTCTCA 1344
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1179 CCAACTGTATGGCTTCCTTGCAACCAAGCAAGATCTGGACATATTCAATCAACACTCTCA 1238
Query 1345 AGGCAAAACAAGGCTGAAATTCGAGTTGAAATCATACCAAGAGATGGTTGTAAAGGAGCT 1404
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1239 AGGCAAAACAAGGCTGAAATTCGAGATGAAATCTTACCAAGAGATGGTTGTAAAGGAGCT 1298
Query 1405 GAGGCAGATCTCTGAGGACAATCAGCAGCTGAACTACTTTAAGAACAAGCTCTCAAAACA 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 GAGGCAGATCTCTGAGGACAATCAGCAGCTGAACTACTTTAAGAACAAGCTCTCAAAACA 1358
Query 1465 GAACAAGCACGCCAAGG-TGCTTGAGGAATCTCTGGAAATTATGAGCGAGAAGCTGCGTA 1523
||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||
Sbjct 1359 GAACAAGCACGCCAAGGGT-CTTGAGGAATCTCTGGAAATTATGAGCGAGAGGCTGCGT- 1416
Query 1524 GAA-CTGCAGAGGATAATCGGATCGTGAGACAGAGAACTAAGATGCAGCATGAACAGAAC 1582
||| |||||||| || |||| || |||||||||||||| |||||||||||||||||||||
Sbjct 1417 GAAACTGCAGAGAATTATCGTATAGTGAGACAGAGAACAAAGATGCAGCATGAACAGAAC 1476
Query 1583 AGGGAAGAGATGGATGCACACGACAGGTTTTTCATGGATTCAATCAAACAGATCCATGA- 1641
|| ||||||||||||||||| ||||||||||||| |||| |||||||||||| ||| |
Sbjct 1477 AGAGAAGAGATGGATGCACAAGACAGGTTTTTCAAGGATGAAATCAAACAGATACATAAG 1536
Query 1642 AAGAAGAGACGCAAAGGAGGAGAATTTCGAGATGTTGCAGCAGCAGGAACGTGCCAAGGT 1701
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 AA-AAGAGATGCAAAGGAGGAGAATTTCGAGATGTTGCAGCAGCAGGAACGTGCCAAGGT 1595
Query 1702 TGTTGGCCAGCAGCAGCAGAACATTAATCCCTCTAGCAATGACGATTGCCGAAAGAGAGC 1761
||||| |||||||||| |||||| |||||||||||||| ||||||| |||||| |||||
Sbjct 1596 TGTTGACCAGCAGCAGAAGAACACCAATCCCTCTAGCAACGACGATTTCCGAAAAAGAGC 1655
Query 1762 TGAGGAAGTGTCAAGCTTCATCGAGTTTCAAGAGAAAGAGATGGAGGAGTTTGTGgaaga 1821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1656 TGAGGAAGTGTCAAGCTTCATCGAGTTTCAAGAGAAAGAGATGGAGGAGTTTGTGGAGGA 1715
Query 1822 gagggagatgctgataaaagatcaagagaagaagatggaagacatgaagaagagGCATCA 1881
||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| |
Sbjct 1716 GAGGGAGATGCTGATAAAAGAGCAAGAGAAGAAGATGGCAGACATGAAGACGAGGCATTA 1775
Query 1882 CGAGGAGATATTTGATCTGGAGAAAGAATTTGATGAGGCTTTGGAACAGCTCATGTACAA 1941
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1776 CGAGGAGATGCTTGATCTGGAGAAAGAGTTTGATGAGGCTTTGGAACAGCTCATGTACAA 1835
Query 1942 GCATGGCCTTCACAATGAAGATGATTGAGACAAA--AG-TCTGGTACACAAGACAAGACT 1998
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1836 GCATGGCCTTCACAATGAAGATGATTGAGACAAAGGAGGTCTGGTACACAAGACAAGACT 1895
Query 1999 AAGTTTCTTTGTTTTGCTTTTGGTATGTCGG-AAAGTAGGAGATCTGAGAGACTCCATTT 2057
||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 1896 AAGTTTCTTTGTTTTGCTTTTGGTATGTCGGCAAA-TAGGAGATCTGAGAGA----A--- 1947
Query 2058 AAATACTAGGACAAATCTAAGGAGATTATAGATTATTATCCTCCAATTTTTAGTAGACGG 2117
|| | ||| | |||||||||||| || ||| |||||||||||||||||||
Sbjct 1948 AA-T-CTA--A---------GGAGATTATAGACTACTATTATCCAATTTTTAGTAGACGG 1994
Query 2118 ATCTAAGGAAGCATTAAGTTCTTGTGAC 2145
||||||||||| ||||||||||||||
Sbjct 1995 CTCTAAGGAAGCGGTAAGTTCTTGTGAC 2022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80713229155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5