BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23575.1
Length=2247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489219 jgi|Araly1|489219|fgenesh2_kg.6__2353__AT5G23575.1 3264 0.0
Ahg487688 jgi|Araly1|487688|fgenesh2_kg.6__822__AT5G08500.1 1794 0.0
Ahg940337 jgi|Araly1|940337|scaffold_600881.1 1744 0.0
Ahg892784 jgi|Araly1|892784|Al_scaffold_0006_780 516 3e-145
Ahg940340 jgi|Araly1|940340|scaffold_600884.1 411 2e-113
> Ahg489219 jgi|Araly1|489219|fgenesh2_kg.6__2353__AT5G23575.1
Length=2207
Score = 3264 bits (1767), Expect = 0.0
Identities = 2092/2238 (93%), Gaps = 66/2238 (3%)
Strand=Plus/Plus
Query 1 AACACTTCTACTTGAATCGCATTGGAAGAGCATCGTCACGACTCCATCACACTTATATAT 60
||||||||||||||||| |||||||||||||| | || | ||| | | || |
Sbjct 1 AACACTTCTACTTGAATTGCATTGGAAGAGCA---T--CG--T-CAT----C--A-ATCT 45
Query 61 TTTGTTTATTCAAATCTTCTTTCAGA--TTTT-TATAC-AAAAAAT---ATAAATTAAAT 113
|||||||||||||||||||||||||| |||| ||||| ||||||| ||||| ||||
Sbjct 46 TTTGTTTATTCAAATCTTCTTTCAGATTTTTTATATACAAAAAAATAAAATAAAATAAA- 104
Query 114 AAA-GAATCCCATAAATATCTCTCTATCGAACTCTCTCTGCTTTTACAAATCTCAGAATC 172
||| ||||||||||||||||||||||| ||| |||||||||| | | | ||
Sbjct 105 AAAGGAATCCCATAAATATCTCTCTATAGAA----CTCTGCTTTT-----T-T-ACAA-A 152
Query 173 TCCTTCAGCGAATTCACATCTCAGCTGCTTTTGAATCCGCCGTAACTAAAAACAATCCTC 232
| | | | | |||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 153 T-C-T---C--A-TCACATCTCAGCTGCTTTTGAATCCGCCGTCTCGAAAACCAATCCTC 204
Query 233 CTTTTCTCGATTCGTTAAACTATGGCCCCGCCGGCAGGACAAACGGCGGCGGTGGCTGAA 292
| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 C--TTCTCGATTCG-TGAACTATGGCCCCGCCGGCAGGACAAACGGCGGCGGTGGCTGAA 261
Query 293 GCGGCTGGCGCCGATGGTGCTCCACCGCAGCAGCAGCGTGGATTTGGTTCCACGATTTCC 352
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 262 GCGGCTGGCGCCGATGGTGCTCAACCGCAGCAGCAGCGTGGATTTGGTTCCACGATTTCC 321
Query 353 GGCATCGTTAGAATCGCCGTCTTTTGGTATTTTGCTTCTAAGTTCTTTTCTCCTAAGCAG 412
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 322 GGAATCGTTAGAATCGCCGTCTTTTGGTATTTTGCTTCCAAGTTCTTTTCACCTAAACAG 381
Query 413 AAACCTATGGATCCCACTGCTCCGTCTCAGCTCATGACTAATCTCTTCCACAAGGGCGAA 472
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 382 AAACCTATGGATCCCTCTGCTCCGTCTCAGCTCATGACCAATCTCTTCCACAAGGGCGAA 441
Query 473 TCATTGGATATGTGGTTTTATCTATCAGAGCAGGAGAAGTTCAATGACTTTGGCAATGAT 532
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 442 TCATTGGATATGTGGTTTTATCTCTCAGAGCATGAGAAGTTCAATGACTTTGGCAATGAT 501
Query 533 CGTGCGCTATATTGGCATGAGACGAATATACCTTATGCTGTATGGACACCAGAGAGTATT 592
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 502 CGTGCGCTTTATTGGCATGAGACCAATATACCTTATGCTGTATGGACACCAGAGAGTATT 561
Query 593 AGGACCAAGTCACTTACGTATTATCCATCTGAGACACTACAGAATAATGGAAGTCTGTAT 652
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AGGACCAAGTCACTGACGTATTATCCATCTGAGACACTACAGAATAATGGAAGTCTGTAT 621
Query 653 GCTCATATCTTTTTTGCTCGATCTGGATTTCCCATTGACCCCACTGATCCTGAATATCAA 712
|||||| ||||||||||||| |||||||||||||| ||||| | |||||||||||| |||
Sbjct 622 GCTCATGTCTTTTTTGCTCGGTCTGGATTTCCCATAGACCCTAATGATCCTGAATACCAA 681
Query 713 CCTCTTAATAGTTTTAGTAGGACGCATGCTGTGGCGACTTACTTTCCAAAGCAGaaa-aa 771
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 682 CCTCTTAATAGTTTTAGCAGGACACATGCTGTGGCGACTTACTTTCCAAAGCA-AAAGAA 740
Query 772 aaaTAAGAAGAAGAGTCTCTTGGGCAGTCCCAAAGACTCTGATGAATCCGAACCTGAAGT 831
|||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 741 AAATAAGAAGAAGAGTCTCTTGGGAAGTCCCAAAGACTCTGATGAATCCGAGCGTGAAGT 800
Query 832 TGAGAAAGTTGGAGATAAGAAATCAGATCCCAAGGAAGAGGTCCCTGTGGAATGGATATC 891
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 801 TGAGAAAGTTGGAGATAAGAAATCCGATCCCAAGGAAGAGGTCCCTGTGGAATGGATATC 860
Query 892 CCTCTGGAAACCTAATGTCACGATTAACCTGGTTGATGATTTTACTCACTATTCACAGAA 951
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 861 CCTCTGGAAACCTAATGTCACGATTAACCTGGTTGATGATTTTACTCGCTATTCACAAAA 920
Query 952 TGGTGTACCACCAAACATTGCTCCTCACTTACTGGTAGAACCGACCACAGGAAATTACTA 1011
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 921 TGGTGTACCACCAAATATTGCTCCTCACTTACTGGTAGAACCTACCACAGGAAATTACTA 980
Query 1012 TCCTACAATTTACTTCAATGAGTTTTGGCTGCTAAGGGACAAGTTCATTCCAGTCAATGA 1071
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 981 TCCTACAATTTACTTCAATGAGTTTTGGCTGCTAAGGGACAAATTCATTCCAGTCAATGA 1040
Query 1072 GACAGTCTCAGAACTACCACTAAATCTGGAAATAAGTCCCATAAGCATGATGAAGTGGCA 1131
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1041 GACAGTCTCAGAACTACCACTCAATCTGGAAATAAGCCCCATAAGCATGATGAAGTGGCA 1100
Query 1132 ACTGTTTCAGCAAGTTGATCAATCTTTCCAGATGCAGCGTAGCTATGGAAGCATGCTTGA 1191
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1101 ACTGTTTCAGCAAGTCGATCAGTCTTTCCAGATGCAGCGTAGCTATGGAAGCATGCTTGA 1160
Query 1192 CGGTGAATCTGACGAACTAAAGAAGGTGTTTTTGGAAGGAAATCCCTATCTTTTGGGGAT 1251
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||
Sbjct 1161 TGGTGAATCTGACGAACTAAAGAGGGTGTTTTTGGAAGGAAATCCCTATCTCTTGGGTAT 1220
Query 1252 CACGATGTTTGTTTCGATGCTTCATTCAGTGTTCGACTTCCTGGCATTCAAAAATGATAT 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 CACGATGTTTGTTTCGATGCTTCATTCAGTGTTCGACTTCCTGGCATTCAAAAATGATAT 1280
Query 1312 CCAATTCTGGAACAAAAATAAATCTATGGAAGGGCTGTCTGCAAAGTCTGTTGTACTGAA 1371
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1281 CCAATTCTGGAACAAAAACAAATCAATGGAAGGACTGTCTGCAAAGTCTGTTGTACTGAA 1340
Query 1372 CTTTATCTGTCAGTTTGTCATCTTCCTCTACTTGCTTGACAACGACACTTCATGGATGAT 1431
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1341 CTTTATCTGTCAGTTTGTCATCTTCCTCTACCTGCTTGACAACGACACTTCATGGATGAT 1400
Query 1432 ACTGGCTAGTTCCGGAGTCGGTGTCTGCATTGAGTTCTGGAAAATAGGGAAAGCCATGCG 1491
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 ACTGGCTAGTTCTGGAGTCGGTGTCTGCATTGAGTTCTGGAAAATAGGGAAAGCCATGCG 1460
Query 1492 CATAGAGGTTGATCGAAGTGGAATGATTCCAAGGTTGAGGTTCCATGATCGTGAATCGTA 1551
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1461 TATAGAGGTTGATCGAAGTGGAATGATTCCAAGGTTGAGGTTCCACGATCGTGAATCCTA 1520
Query 1552 TGCAAGCAATAAAACCAAGGAGTATGATGACATTGCCATCAAATTCTTATCCTATGTGCT 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 TGCAAGCAATAAAACCAAGGAGTATGATGACATTGCCATCAAATTCTTATCCTATGTGCT 1580
Query 1612 CCTCCTCCTTGTCATTGGCTTGTCCATATATTCTCTCGCTTATGAACGCCACAAGAGCTG 1671
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 1581 CCTCCTCCTTGTCATTGGCTTATCTATATATTCTCTCGCCTATGAACGCCACAAGAGCTG 1640
Query 1672 GTATTCTTGGATACTATCTTCACTAACAAGCTGTGTCTACATGTTCGGTTTCATCATGAT 1731
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1641 GTATTCTTGGATCCTGTCTTCACTAACAAGCTGTGTCTACATGTTTGGTTTCATCATGAT 1700
Query 1732 GTGTCCTCAGCTATTCATCAACTACAAGCTTAAATCAGTGGCACATTTACCATGGAGACA 1791
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1701 GTGTCCTCAGCTATTCATCAACTATAAGCTAAAATCAGTGGCACATTTACCATGGAGACA 1760
Query 1792 GATGACTTACAAGTTCCTCAACACCATTATCGACGATCTCTTTGCCTTTGTCATCAAAAT 1851
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1761 GATGACTTACAAGTTCCTCAACACCATTATCGACGATCTTTTTGCCTTTGTCATCAAAAT 1820
Query 1852 GCCGATTTTACATCGACTTTCTGTATTCAGAGATGATGTGATATTCTTGATATACTTATA 1911
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1821 GCCGATTCTACATCGACTTTCTGTATTCCGAGATGATGTGATATTCTTGATATACTTATA 1880
Query 1912 CCAAAGGTGGGTTTACCCAGTGGATAAGACACGTGTGAACGAGTTCGGTTTTGGAGGTGA 1971
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1881 CCAAAGGTGGGTTTACCCTGTGGACAAGACACGTGTTAACGAGTTCGGTTTTGGAGGTGA 1940
Query 1972 GGATGAAACTGCagagaagaagttgatcactgagaaagaagaagaagacaagaaAACAAA 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1941 GGATGAAACTGCAGAGAAGAAGTTGATCACTGAGAAAGAAGAAGAAGACAAGAAAACAAA 2000
Query 2032 CTAATCTCTTCTCTTCTTCAAATTTTATTACAGTTCAGTTATAGTGTCTTAATTTATTTT 2091
||||||||||||||||||| | ||||| |||||||||||||||| ||||||||||||||
Sbjct 2001 CTAATCTCTTCTCTTCTTCCAGTTTTACAACAGTTCAGTTATAGTTTCTTAATTTATTTT 2060
Query 2092 TGTTCTCACTTTTGGAAATTGTTTTGTT-CAAGTTTAATGTCAACCCTCAAGACACATTA 2150
|||||||||||| | |||||||||| |||||||||||||||| |||||||||||||
Sbjct 2061 TGTTCTCACTTTAG----TTGTTTTGTTACAAGTTTAATGTCAACTTTCAAGACACATTA 2116
Query 2151 TTAAGCAACTCCTTTGG-TTTTTTGTGaaa-aaggaaaaaaaCAACATTTTCTCTAAAGC 2208
| || |||||||||||| |||||| ||||| || ||||||| |||||||| | ||
Sbjct 2117 TAAAACAACTCCTTTGGATTTTTT-TGAAAGAA--AAAAAAA-AACATTTT----A--GC 2166
Query 2209 TCTGAGATATGGTAAAAT 2226
||||||||||||||||||
Sbjct 2167 TCTGAGATATGGTAAAAT 2184
> Ahg487688 jgi|Araly1|487688|fgenesh2_kg.6__822__AT5G08500.1
Length=1855
Score = 1794 bits (971), Expect = 0.0
Identities = 1465/1704 (86%), Gaps = 31/1704 (2%)
Strand=Plus/Plus
Query 347 ATTTCCGGCATCGTTAGAATCGCCGTCTTTTGGTATTTTGCTTCTAAGTTCTTTTCTCCT 406
||| |||| ||| |||||||||||||||| || || |||||||||||||||||||||||
Sbjct 153 ATTACCGGAATCATTAGAATCGCCGTCTTCTGCTACTTTGCTTCTAAGTTCTTTTCTCCG 212
Query 407 AAGCAGAAACCTAT-GGATCCCACTGCTCCGTCTCAGCTCATGACTAATCTCTTCCACAA 465
|| || ||||| || |||||| || || ||||| || ||| | |||||||| || |
Sbjct 213 AAACAAAAACC-ATCGGATCCTTCTAAGCCTTCTCATCTTATGTCCAATCTCTTTCAGAG 271
Query 466 GGGCGA-ATCATTGGATATGTGGTTTTATCTATCAGAGCAGGAGAAGTTCAATGACTTTG 524
||| || || ||||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct 272 GGGAGAGCCCA-TGGATATGTGGTTTTATCTTTCGGAGCATGAGAAATTCAATGACTTTG 330
Query 525 GCAATGATCGTGCGC-TATATTGGCATGAGACGAATATACCTTATGCTGTATGGACA-CC 582
||||||| |||||| ||| |||||| ||||| || |||||||||||||| |||| | ||
Sbjct 331 GCAATGAAGGTGCGCTTAT-TTGGCACGAGACAAACATACCTTATGCTGTGTGGA-AGCC 388
Query 583 AGAGAGTATTAGGACCAAGTCACTTACGTATTATCCATCTGAGACACT-ACAGAATAATG 641
|||||| | ||||||| |||| | || ||||||||||| ||| |||| | |||||||||
Sbjct 389 AGAGAGCACTAGGACCTTGTCAATGACATATTATCCATCCGAGGCACTGA-AGAATAATG 447
Query 642 GAAGTCTGTATGCTCATATCTTTTTTGCTCGATCTGGATTTCCCATTGACCCCACTGATC 701
||||||||||||||||| |||| |||||||||||||| | ||| || |||||||||||||
Sbjct 448 GAAGTCTGTATGCTCATGTCTTCTTTGCTCGATCTGGCTATCCTATAGACCCCACTGATC 507
Query 702 CTGAATATCAACCTCTTAA-TAGTTTTAGTAGGACGCATGC-TGTGGCGACTTACTTTCC 759
||||||| ||||||||||| | | ||| | | ||| || | ||| || |||||||| ||
Sbjct 508 CTGAATACCAACCTCTTAACT-GCTTTGGCAAGACACA-CCGTGTTGCAACTTACTTGCC 565
Query 760 AAAGCAGaaaa-aaaaTAAGAAGAAGAGTCTCTTGGGCAGTCCCAAAGACTCTGATGAAT 818
||||| ||||| | |||||||||||||||| ||||| | |||||||||| ||||||||
Sbjct 566 AAAGC-GAAAAGCAGATAAGAAGAAGAGTCTGTTGGGAAATCCCAAAGACGATGATGAAT 624
Query 819 CCGAA-CCTGAAGTTGAGAAAGTTGGA-GATAAGAAATCAGATCCCAAGGAAGAGGTCCC 876
|| || |||||||||| | ||| || | |||| | || |||| |||||| |||| |||
Sbjct 625 CC-AATGTTGAAGTTGAGGAGGTT-GATGGTAAGGACTCGGATCTCAAGGATGAGGGCCC 682
Query 877 TGTGGAATGGATATCCCT-CTGGAAACCTAATGTCACGATTAACCTGGTTGATGATTTTA 935
|||||||||| | | ||| ||||||||| |||||||| |||||||| || ||||| ||||
Sbjct 683 TGTGGAATGGGT-TTCCTACTGGAAACCAAATGTCACAATTAACCTAGTCGATGACTTTA 741
Query 936 CTCACTATTCACAGAATGGTGTACCACCAAACATTGCTCCTCACTTACTGGTAGAACCGA 995
||| |||| ||||| ||||||||||||||||||||| |||| |||||||||| ||||| |
Sbjct 742 CTCGCTATCCACAGCATGGTGTACCACCAAACATTGATCCTTACTTACTGGTGGAACCTA 801
Query 996 CCACAGGAAATTACTATCCTACAATTTACTTCAATGAGTTTTGGCTGCTAAGGGACAAGT 1055
|||| ||| ||||| |||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 802 GTACAGTAAACTACTACCCTACAGTTTTCTTTAATGAGTTTTGGCTGCTAAGGGACAAGT 861
Query 1056 TCATTCCAGTCAATGAGACAGTCTCAGAACTACCACTAAATCTGGAAATAAGTCCCATAA 1115
| ||| | |||||||||| |||||||| || ||||| ||||||||| |||| |||||||
Sbjct 862 TGATTTTAATCAATGAGACGGTCTCAGAGCTGCCACTTAATCTGGAAGTAAGCCCCATAA 921
Query 1116 GCATGATGAAGTGGCAACTGTTTCAGCAAG-TTGATCAATCTTTCCAGATGCAGCGTAGC 1174
|||||| |||||||| |||||||||| || ||||||| ||||||||||| || ||||||
Sbjct 922 GCATGACAAAGTGGCAGCTGTTTCAGC-AGATTGATCAGTCTTTCCAGATTCACCGTAGC 980
Query 1175 TATGGAAGCATGCTTGACGGTGAATCTGACGAACTAAAGAAGGTGTTTTTGGAAGGAAAT 1234
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 981 TATGGAAGCATGCTTGATGGTGAATCTGACGAACTAAAGAGGGTGTTTTTGGAAGGAAAT 1040
Query 1235 CCCTATCTTTTGGG-GATCACGATGTTTGTTTCGATGCTTCATTCAGTGTTCGACTTCCT 1293
|||||||| ||||| | |||| ||||||||||||||||||||||| || || ||||||||
Sbjct 1041 CCCTATCTGTTGGGCG-TCACAATGTTTGTTTCGATGCTTCATTCTGTATTTGACTTCCT 1099
Query 1294 GGCATTCAAAAATGATATCCAATTCTGGAACAAAAATAAATCTATGGAAGGGCTGTCTGC 1353
|||||||||||||||||||| || |||||||| || |||||||||||||| ||||||||
Sbjct 1100 TGCATTCAAAAATGATATCCAGTTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGC 1159
Query 1354 AAAGTCTGTTGTACTGAACTTTATCTGTCAGTTTGTCATCTTCCTCTACTTGCTTGACAA 1413
|||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct 1160 GAAGTCTGTCGTACTGAACTTTATGTGTCAGTTTATCATCTTCCTCTACCTGCTTGACAA 1219
Query 1414 CGACACTTCATGGATGATACTGGCTAGTTCCGGAGTCGGTGTCTGCATTGAGTTCTGGAA 1473
||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 1220 CGACACTTCGTGGATGATACTGGCTAGCTCTGGAGTTGGTGTCTGCATCGAGTTCTGGAA 1279
Query 1474 AATAGGGAAAGCCATGCGCATAGAGGTTGATCGAAGTGGAATGATTCCAAGGTTGAGGTT 1533
|||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1280 AATAGGGAAAGCCATGCGGATTGAGGTTGATCGAAGTGGGATGATTCCAAGATTGAGGTT 1339
Query 1534 CCATGATCGTGAATCGTATGCAAGCAATAAAACCAAGGAGTATGATGACATTGCCATCAA 1593
||| || |||||||| ||||||||||| || |||||||||||||| ||||| ||||| ||
Sbjct 1340 CCACGACCGTGAATCCTATGCAAGCAACAAGACCAAGGAGTATGACGACATCGCCATTAA 1399
Query 1594 ATTCTTATCCTATGTGCTCCTCCTCCTTGTCATTGGCTTGTCCATATATTCTCTCGCTTA 1653
|||||||||||||||||||||||||||||| | || || ||||||||||| || || ||
Sbjct 1400 ATTCTTATCCTATGTGCTCCTCCTCCTTGTTGTGGGTTTCTCCATATATTCACTTGCCTA 1459
Query 1654 TGAACGCCACAAGAGCTGGTATTCTTGGATACTATCTTCACTAACAAGCTGTGTCTACAT 1713
||||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||
Sbjct 1460 TGAACGCCACAAGAGCTGGTACTCATGGATCCTATCTTCACTAACGAGCTGCGTCTACAT 1519
Query 1714 GTTCGGTTTCATCATGATGTGTCCTCAGCTATTCATCAACTACAAGCTTAAATCAGTGGC 1773
||| |||||||| |||||||||||||| | ||||||||||| ||||| || ||||| ||
Sbjct 1520 GTTTGGTTTCATAATGATGTGTCCTCAATTGTTCATCAACTATAAGCTGAAGTCAGTAGC 1579
Query 1774 ACATTTACCATGGAGACAGATGACTTACAAGTTCCTCAACACCATTATCGACGATCTCTT 1833
||||||||||||||| || ||||| || |||||||||||||| || ||||||||||||||
Sbjct 1580 ACATTTACCATGGAGGCAAATGACATATAAGTTCCTCAACACAATCATCGACGATCTCTT 1639
Query 1834 TGCCTTTGTCATCAAAATGCCGATTTTACATCGACTTTCTGTATTCAGAGATGATGTGAT 1893
||| ||||||||||||||||| || | ||||| |||||||| ||| |||||||||||||
Sbjct 1640 TGCTTTTGTCATCAAAATGCCAATGCTGCATCGCCTTTCTGTCTTCCGAGATGATGTGAT 1699
Query 1894 ATTCTTGATATACTTATACCAAAGGTGGGTTTACCCAGTGGATAAGACACGTGTGAACGA 1953
|||||| |||||||| ||||| || |||||||| || ||||| || |||||||| |||||
Sbjct 1700 ATTCTTAATATACTTGTACCAGAGATGGGTTTATCCTGTGGACAAAACACGTGTCAACGA 1759
Query 1954 GTTCGGTTTTGGAGGTGAGGATGAAACTGCagaga-agaagttgatcactgagaaagaag 2012
||| |||||||||||||||||||| ||| || | | ||| |||| |||| ||||||
Sbjct 1760 GTTTGGTTTTGGAGGTGAGGATGAGTCTGTGGATACA-AAGAAGATCTCTGACCAAGAAG 1818
Query 2013 aagaagacaagaaAACAAACTAAT 2036
| || |||||||||||||||||
Sbjct 1819 ATGA---CAAGAAAACAAACTAAT 1839
> Ahg940337 jgi|Araly1|940337|scaffold_600881.1
Length=1813
Score = 1744 bits (944), Expect = 0.0
Identities = 1458/1706 (85%), Gaps = 35/1706 (2%)
Strand=Plus/Plus
Query 347 ATTTCCGGCATCGTTAGAATCGCCGTCTTTTGGTATTTTGCTTCTAAGTTCTTTTCTCCT 406
||| |||| ||| |||||||||||||||| || || |||||||||||||||||||||||
Sbjct 108 ATTACCGGAATCATTAGAATCGCCGTCTTCTGCTACTTTGCTTCTAAGTTCTTTTCTCCG 167
Query 407 AAGCAGAAACCTAT-GGATCCCACTGCTCCGTCTCAGCTCATGACTAATCTCTTCCACAA 465
|| || ||||| || |||||| || || ||||| || ||| | |||||||| || |
Sbjct 168 AAACAAAAACC-ATCGGATCCTTCTAAGCCTTCTCATCTTATGTCCAATCTCTTTCAGAG 226
Query 466 GGGCGA-ATCATTGGATATGTGGTTTTATCTATCAGAGCAGGAGAAGTTCAATGACTTTG 524
||| || || ||||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct 227 GGGAGAGCCCA-TGGATATGTGGTTTTATCTTTCGGAGCATGAGAAATTCAATGACTTTG 285
Query 525 GCAATGATCGTGCGC-TATATTGGCATGAGACGAATATACCTTATGCTGTATGGACA-CC 582
||||||| |||||| ||| |||||| ||||| || |||||||||||||| |||| | ||
Sbjct 286 GCAATGAAGGTGCGCTTAT-TTGGCACGAGACAAACATACCTTATGCTGTGTGGA-AGCC 343
Query 583 AGAGAGTATTAGGACCAAGTCACTTACGTATTATCCATCTGAGACACT-ACAGAATAATG 641
|||||| | ||||||| |||| | || ||||||||||| ||| |||| | |||||||||
Sbjct 344 AGAGAGCACTAGGACCTTGTCAATGACATATTATCCATCCGAGGCACTGA-AGAATAATG 402
Query 642 GAAGTCTGTATGCTCATATCTTTTTTGCTCGATCTGGATT-TCCCATTGACCCCACTGAT 700
||||||||||||||||| |||| |||||||||||||| || ||| || || || | ||||
Sbjct 403 GAAGTCTGTATGCTCATGTCTTCTTTGCTCGATCTGG-TTATCCTATAGATCCTAGTGAT 461
Query 701 CCTGAATATCAACCTCTTAA-TAGTTTTAGTAGGACGCATGCTGTGGCGACTTACTTTCC 759
|||||||| || |||||||| | | ||| | ||||| || | | || |||||||| ||
Sbjct 462 CCTGAATACCAGCCTCTTAACT-GCTTTGGCAGGACACACCCCATTGCAACTTACTTACC 520
Query 760 AAAGCAGaaaa-aaaaTAAGAAGAAGAGTCTCTTGGGCAGTCCCAAAGACTCTGATGAAT 818
||||| ||||| | |||||||||||||||| ||||| | |||||||||| ||||||||
Sbjct 521 AAAGC-GAAAAGCAGATAAGAAGAAGAGTCTGTTGGGAAATCCCAAAGACGATGATGAAT 579
Query 819 CCGAA-CCTGAAGTTGAGAAAGTTGGA-GATAAGAAATCAGATCCCAAGGAAGAGGTCCC 876
|| || |||||||||| | ||| || | |||| | || |||| |||||| |||| ||
Sbjct 580 CC-AATGTTGAAGTTGAGGAGGTT-GATGGTAAGGACTCGGATCTCAAGGATGAGGGACC 637
Query 877 TGTGGAATGGATATCCCT-CTGGAAACCTAATGTCACGATTAACCTGGTTGATGATTTTA 935
|||||||||| | | ||| ||||||||| |||||||| |||||||| || ||||| ||||
Sbjct 638 TGTGGAATGGGT-TTCCTACTGGAAACCAAATGTCACAATTAACCTAGTCGATGACTTTA 696
Query 936 CTCACTATTCACAGAATGGTGTACCACCAAACATTGCTCCTCACTTACTGGTAGAACCGA 995
||| |||| ||||| ||||||||||||||||||||| |||| |||||||||| ||||| |
Sbjct 697 CTCGCTATCCACAGCATGGTGTACCACCAAACATTGATCCTTACTTACTGGTGGAACCTA 756
Query 996 CCACAGGAAATTACTATCCTACAATTTACTTCAATGAGTTTTGGCTGCTAAGGGACAAGT 1055
|||| ||| ||||| |||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 757 GTACAGTAAACTACTACCCTACAGTTTTCTTTAATGAGTTTTGGCTGCTAAGGGACAAGT 816
Query 1056 TCATTCCAGTCAATGAGACAGTCTCAGAACTACCACTAAATCTGGAAATAAGTCCCATAA 1115
| ||| | |||||||||| |||||||| || ||||| ||||||||| |||| |||||||
Sbjct 817 TGATTTTAATCAATGAGACGGTCTCAGAGCTGCCACTTAATCTGGAAGTAAGCCCCATAA 876
Query 1116 GCATGATGAAGTGGCAACTGTTTCAGCA-AGTTGATCAATCTTTCCAGATGCAGCGTAGC 1174
|||||| |||||||| ||||||||||| | ||||||| ||||| ||||| || ||||||
Sbjct 877 GCATGACAAAGTGGCAGCTGTTTCAGCAGA-TTGATCAGTCTTTTCAGATTCACCGTAGC 935
Query 1175 TATGGAAGCATGCTTGACGGTGAATCTGACGAACTAAAGAAGGTGTTTTTGGAAGGAAAT 1234
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 936 TATGGAAGCATGCTTGATGGTGAATCTGACGAACTAAAGAGGGTGTTTTTGGAAGGAAAT 995
Query 1235 CCCTATCTTTTGGG-GATCACGATGTTTGTTTCGATGCTTCATTCAGTGTTCGACTTCCT 1293
|||||||| ||||| | |||| ||||||||||||||||||||||| || || ||||||||
Sbjct 996 CCCTATCTCTTGGGTG-TCACAATGTTTGTTTCGATGCTTCATTCTGTATTTGACTTCCT 1054
Query 1294 GGCATTCAAAAATGATATCCAATTCTGGAACAAAAATAAATCTATGGAAGGGCTGTCTGC 1353
|||||||||||||||||||| || |||||||| || |||||||||||||| ||||||||
Sbjct 1055 TGCATTCAAAAATGATATCCAGTTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGC 1114
Query 1354 AAAGTCTGTTGTACTGAACTTTATCTGTCAGTTTGTCATCTTCCTCTACTTGCTTGACAA 1413
|||||||| ||||| |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1115 GAAGTCTGTCGTACTAAACTTTATCTGTCAGTTTATCATCTTCCTCTACCTGCTTGACAA 1174
Query 1414 CGACACTTCATGGATGATACTGGCTAGTTCCGGAGTCGGTGTCTGCATTGAGTTCTGGAA 1473
||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1175 CGACACTTCTTGGATGATACTGGCTAGCTCCGGAGTTGGTGTCTGCATCGAGTTCTGGAA 1234
Query 1474 AATAGGGAAAGCCATGCGCATAGAGGTTGATCGAAGTGGAATGATTCCAAGGTTGAGGTT 1533
|||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1235 AATAGGGAAAGCCATGCGGATTGAGGTTGATCGAAGTGGGATGATTCCAAGATTGAGGTT 1294
Query 1534 CCATGATCGTGAATCGTATGCAAGCAATAAAACCAAGGAGTATGATGACATTGCCATCAA 1593
||| || |||||||| ||||||||||| || |||||||||||||| ||||| ||||| ||
Sbjct 1295 CCACGACCGTGAATCCTATGCAAGCAACAAGACCAAGGAGTATGACGACATCGCCATTAA 1354
Query 1594 ATTCTTATCCTATGTGCTCCTCCTCCTTGTCATTGGCTTGTCCATATATTCTCTCGCTTA 1653
|||||||||||||||||||||||||| ||| | || || ||||||||||| || || ||
Sbjct 1355 ATTCTTATCCTATGTGCTCCTCCTCCATGTTGTGGGTTTCTCCATATATTCACTTGCCTA 1414
Query 1654 TGAACGCCACAAGAGCTGGTATTCTTGGATACTATCTTCACTAACAAGCTGTGTCTACAT 1713
||||||||||||||||||||| || ||||| |||||||||||||| ||||| ||||||||
Sbjct 1415 TGAACGCCACAAGAGCTGGTACTCATGGATCCTATCTTCACTAACGAGCTGCGTCTACAT 1474
Query 1714 GTTCGGTTTCATCATGATGTGTCCTCAGCTATTCATCAACTACAAGCTTAAATCAGTGGC 1773
||| |||||||| |||||||||||||| | ||||||||||| ||||| || ||||| ||
Sbjct 1475 GTTTGGTTTCATAATGATGTGTCCTCAATTGTTCATCAACTATAAGCTGAAGTCAGTAGC 1534
Query 1774 ACATTTACCATGGAGACAGATGACTTACAAGTTCCTCAACACCATTATCGACGATCTCTT 1833
||||||||||||||| || ||||| || |||||||||||||| || ||||||||||||||
Sbjct 1535 ACATTTACCATGGAGGCAAATGACATATAAGTTCCTCAACACAATCATCGACGATCTCTT 1594
Query 1834 TGCCTTTGTCATCAAAATGCCGATTTTACATCG-ACTTTCTGTATTCAGAGATGATGTGA 1892
||| ||||||||||||||||| || | ||||| | ||||||| ||| ||||||||||||
Sbjct 1595 TGCTTTTGTCATCAAAATGCCAATGCTGCATCGCA-TTTCTGTCTTCCGAGATGATGTGA 1653
Query 1893 TATTCTTGATATACTTATACCAAAGGTGGGTTTACCCAGTGGATAAGA-CACGTGTGAAC 1951
||||||| |||||||| ||||| || |||||||| || ||||| | || ||||||| |||
Sbjct 1654 TATTCTTAATATACTTGTACCAGAGATGGGTTTATCCTGTGGACA-GAACACGTGTCAAC 1712
Query 1952 GAGTTCGGTTTTGGAGGTGAGGATGAAACTGCagaga-agaagttgatcactgagaaaga 2010
|| || |||||||||||||||||||| ||| || | | ||| |||| |||| ||||
Sbjct 1713 GAATTTGGTTTTGGAGGTGAGGATGAGTCTGTGGATACA-AAGAAGATCTCTGACCAAGA 1771
Query 2011 agaagaagacaagaaAACAAACTAAT 2036
||| || |||||||||||||||||
Sbjct 1772 AGATGA---CAAGAAAACAAACTAAT 1794
> Ahg892784 jgi|Araly1|892784|Al_scaffold_0006_780
Length=2427
Score = 516 bits (279), Expect = 3e-145
Identities = 407/469 (87%), Gaps = 8/469 (2%)
Strand=Plus/Plus
Query 847 TAAGAAATCAGATCCCAAGGAAGAGGTCCCTGTGGAATGGATATCCCT-CTGGAAACCTA 905
|||| | || |||| |||||| |||| ||||||||||||| ||| ||| ||||||||| |
Sbjct 813 TAAGGACTCGGATCTCAAGGATGAGGGCCCTGTGGAATGGGTAT-CCTACTGGAAACCAA 871
Query 906 ATGTCACGATTAACCTGGTTGATGATTTTACTCACTATTCACAGAATGGTGTACCACCAA 965
||||||| | |||||| || ||||| ||||||| |||| ||||| |||||||||||||||
Sbjct 872 ATGTCACAAATAACCTAGTCGATGACTTTACTCGCTATCCACAGCATGGTGTACCACCAA 931
Query 966 ACATTGCTCCTCACTTACTGGTAGAACCGACCACAGGAAATTACTATCCTACAATTTACT 1025
|||||| |||| |||||||||| ||||| | |||| ||| ||||| |||||| ||| |
Sbjct 932 ACATTGATCCTTACTTACTGGTGGAACCTAGTACAGTAAACTACTACCCTACAGTTTTTT 991
Query 1026 TCAATGAGTTTTGGCTGCTAAGGGACAAGTTCATTCCAGTCAATGAGACAGTCTCAGAAC 1085
||||||||||||||||||||||||||||||| ||| | |||||||||| |||||||| |
Sbjct 992 TCAATGAGTTTTGGCTGCTAAGGGACAAGTTGATTTTAATCAATGAGACGGTCTCAGAGC 1051
Query 1086 TACCACTAAATCTGGAAATAAGTCCCATAAGCATGATGAAGTGGCAACTGTTTCAGCA-A 1144
| ||||| ||||||||| |||| ||||||||||||| |||||||| ||||||||||| |
Sbjct 1052 TGCCACTTAATCTGGAAGTAAGCCCCATAAGCATGACAAAGTGGCAGCTGTTTCAGCAGA 1111
Query 1145 GTTGATCAATCTTTCCAGATGCAGCGTAGCTATGGAAGCATGCTTGACGGTGAATCTGAC 1204
||||||| ||||||||||| || ||||||||||||||||||||||| | ||||||||||
Sbjct 1112 -TTGATCAGTCTTTCCAGATTCACCGTAGCTATGGAAGCATGCTTGATGTTGAATCTGAC 1170
Query 1205 GAACTAAAGAAGGTGTTTTTGGAAGGAAATCCCTATCTTTTGGG-GATCACGATGTTTGT 1263
|||||||||| ||||||||||||||||||||||||||| ||||| | |||| ||||| ||
Sbjct 1171 GAACTAAAGAGGGTGTTTTTGGAAGGAAATCCCTATCTGTTGGGCG-TCACAATGTT-GT 1228
Query 1264 TTCGATGCTTCATTCAGTGTTCGACTTCCTGGCATTCAAAAA-TGATAT 1311
||||||||||||||| || || |||||||| ||||||||||| || |||
Sbjct 1229 TTCGATGCTTCATTCTGTATTTGACTTCCTTGCATTCAAAAAATGCTAT 1277
> Ahg940340 jgi|Araly1|940340|scaffold_600884.1
Length=1933
Score = 411 bits (222), Expect = 2e-113
Identities = 403/484 (83%), Gaps = 37/484 (8%)
Strand=Plus/Plus
Query 1047 GGGACAAGTTCATTCCAGTCAATGAGACAGTCTCAGAACTACCACTAAATCTGGAAATAA 1106
|||||||||| ||| | |||||||||| |||||||| || ||||| ||||||||| |||
Sbjct 1018 GGGACAAGTTGATTTTAATCAATGAGACGGTCTCAGAGCTGCCACTTAATCTGGAAGTAA 1077
Query 1107 GTCCCATAAGCATGATGAAGTGGCAACTGTTTCAGCAAG-TTGATCAATCTTTCCAGATG 1165
| ||||||||||||| |||||||| |||||||||| || ||||||| |||||||||||
Sbjct 1078 GCCCCATAAGCATGACAAAGTGGCAGCTGTTTCAGC-AGATTGATCAGTCTTTCCAGATT 1136
Query 1166 CAGCGTAGCTATGGAAGCATGCTTGACGGTGAATCTGACGAACTAAAGAAGGTGTTTTTG 1225
|| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1137 CACCGTAGCTATGGAAGCATGCTTGATGGTGAATCTGACGAACTAAAG--GGTGTTTTTG 1194
Query 1226 GAAGGAAATCCCTATCTTTTGGG-GATCAC---GATG-TT---TG--T--TTC-G-A--T 1269
||||||||||||||||| ||||| | |||| | || || || | ||| | | |
Sbjct 1195 GAAGGAAATCCCTATCTGTTGGGCG-TCACAATGTTGTTTCGATGCTTCATTCTGTATTT 1253
Query 1270 G-----CTT-CATTC---AGTG-T-TCGACTT--CC-TGGCATT-CAAAAATGATATCCA 1314
| ||| ||||| | || | | || || || || |||| | | ||||||||
Sbjct 1254 GACTTCCTTGCATTCAAAAATGCTATTGAATTACCCGTGACATTCCCTGCA-GATATCCA 1312
Query 1315 ATTCTGGAACAAAAATAAATCTATGGAAGGGCTGTCTGCAAAGTCTGTTGTACTGAACTT 1374
|| |||||||| || |||||||||||||| |||||||| |||||||| |||||||| ||
Sbjct 1313 GTTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGCGAAGTCTGTCGTACTGAATTT 1372
Query 1375 TATCTGTCAGTTTGTCATCTTCCTCTACTTGCTTGACAACGACACTTCATGGATGATACT 1434
||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1373 TATCTGTCAGTTTATCATCTTCCTCTACCTGCTTGACAACGACACTTCGTGGATGATACT 1432
Query 1435 GGCTAGTTCCGGAGTCGGTGTCTGCATTGAGTTCTGGAAAATAGGGAAAGCCATGCGCAT 1494
|||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1433 GGCTAGCTCTGGAGTTGGTGTCTGCATCGAGTTCTGGAAAATAGGGAAAGCCATGCGGAT 1492
Query 1495 AGAG 1498
|||
Sbjct 1493 TGAG 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84598434145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5