BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23580.1
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941887 jgi|Araly1|941887|scaffold_602431.1 2368 0.0
Ahg489809 jgi|Araly1|489809|fgenesh2_kg.6__2943__AT4G09570.1 418 7e-116
Ahg476611 jgi|Araly1|476611|fgenesh2_kg.2__1741__AT1G74740.1 156 6e-37
> Ahg941887 jgi|Araly1|941887|scaffold_602431.1
Length=1510
Score = 2368 bits (1282), Expect = 0.0
Identities = 1435/1510 (95%), Gaps = 6/1510 (0%)
Strand=Plus/Plus
Query 85 aaaaaGCTCTCAAGAATGGCGAACAAACCAAGAACCAGATGGGTTCTTCCTTACAAGACC 144
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 6 AAAAAGCTCTCAAGAATGGCAAACAAACCAAGAACCAGATGGGTTCTTCCTTACAAGACC 65
Query 145 AAAAACGTTGAAGACAATTACTTTCTTGGTCAAGTCCTTGGACAAGGCCAATTCGGAACC 204
|||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 66 AAAAACCTTGAAGACAATTACTTTCTTGGTCAAGTTCTCGGACAAGGCCAATTCGGAACC 125
Query 205 ACTTTCCTCTGTACCCATAAACAGACAGGTCAAAAGCTTGCCTGCAAATCCATACCCAAA 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 ACTTTCCTCTGTACCCATAAACAGACAGGTCAAAAGCTTGCCTGCAAATCCATACCCAAA 185
Query 265 AGGAAGCTCCTTTGTCAAGAAGATTACGACGACGTTCTGAGAGAGATCCAGATAATGCAT 324
||||| ||| |||| ||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 186 AGGAAACTCATTTGCCAAGAAGATTACGACGACGTTATGAGGGAGATCCAGATAATGCAT 245
Query 325 CACTTGTCTGAATACCCCAACGTTGTCCGTATAGAGAGTGCGTACGAGGACACCAAAAAC 384
||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |
Sbjct 246 CACTTGTCTGAATACCCCAACGTTGTCCGTATAGAAAGTGCCTATGAGGACACCAAAAGC 305
Query 385 GTGCATCTTGTGATGGAGCTTTGTGAAGGAGGTGAGTTGTTTGATAGAATTGTGAAGAGA 444
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
Sbjct 306 GTGCATCTTGTGATGGAGCTCTGTGAAGGTGGTGAGTTGTTTGATAGAATTGTGAAGACA 365
Query 445 GGTCATTACAGTGAAAGAGAAGCTGCTAAGCTTATCAAGACCATTGTTGGGGTTGTTGAG 504
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 366 GGTCATTACAGTGAGAGAGAAGCTGCGAAGCTTATTAAGACCATTGTTGGGGTCGTTGAG 425
Query 505 GCGTGTCACTCTCTTGGTGTTGTTCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTTCT 564
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 426 GCTTGTCACTCTCTTGGTGTTGTTCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTGCT 485
Query 565 TCTTCTGATGAAGATGCTTCTCTTAAATCTACTGACTTTGGCCTCTCTGTTTTCTGCACA 624
|||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 486 TCTTGTGCTGAAGATGCTTCTCTTAAATCTACCGACTTTGGCCTCTCTGTTTTCTGCAAA 545
Query 625 CCAGGAGAAGCATTTTCGGAACTCGTTGGTAGTGCTTACTATGTGGCACCTGAGGTTTTA 684
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 546 CCAGGCGAAGCATTTTCGGAACTCGTTGGTAGTGCCTACTATGTGGCACCTGAGGTTTTA 605
Query 685 CATAAGCATTATGGTCCTGAATGTGACGTATGGAGTGCTGGAGTTATCCTCTACATTCTC 744
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 606 CATAAGCATTATGGCCCTGAATGTGACGTATGGAGCGCTGGAGTTATCCTCTACATTCTC 665
Query 745 TTATGTGGTTTTCCTCCTTTTTGGGCTGAGAGTGAAATAGGCATCTTCAGGAAGATTTTA 804
||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 666 CTATGTGGTTTTCCTCCTTTCTGGGCTGAGAGTGAAATTGGCATCTTCAGAAAGATTTTA 725
Query 805 CAGGGAAAGTTGGAGTTTGAGATCAATCCTTGGCCTAGCATTTCAGAGAGTGCCAAAGAT 864
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 726 CAGGGAAAGCTGGAGTTTGAGATCAATCCTTGGCCTACCATTTCAGAGAGTGCCAAAGAT 785
Query 865 CTTATAAAGAAAATGCTTGAAAGCAATCCTAAAAAGAGGCTAACTGCTCATCAAGTGTTG 924
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 786 CTTATAAAGAAAATGCTCGAAAGCAATCCAAAAAAGAGGCTAACTGCTCATCAAGTGTTG 845
Query 925 TGTCATCCGTGGATTGTGGATGATAAGGTTGCTCCAGATAAACCTTTGGACTGCGCGGTA 984
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 846 TGTCACCCGTGGATTGTGGATGATAAGGTTGCTCCAGATAAACCTTTGGACTGCGCAGTA 905
Query 985 GTGTCCCGCCTGAAGAAGTTCTCTGCAATGAACAAACTTAAGAAGATGGCTTTACGAGTT 1044
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 906 GTGTCCCGTCTGAAAAAGTTCTCTGCGATGAACAAACTTAAGAAGATGGCTTTGCGGGTG 965
Query 1045 ATTGCAGAGAGACTATCTGAGGAAGAAATCGGTGGTCTCAAAGAACTGTTCAAAATGATA 1104
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 966 ATTGCAGAGAGACTATCTGAGGAAGAAATCGGTGGGCTCAAAGAACTGTTCAAAATGATA 1025
Query 1105 GACACAGATAAAAGTGGGACTATCACGTTTGAAGAGTTAAAAGATAGTATGAGACGTGTT 1164
|||||||||||||| ||||| || || ||||||||||||||||| |||||||||||||||
Sbjct 1026 GACACAGATAAAAGCGGGACCATTACATTTGAAGAGTTAAAAGACAGTATGAGACGTGTT 1085
Query 1165 GGGTCAGAGCTTATGGAATCAGAGATCCAAGAACTCTTGCGTGCGGCTGATGTTGATGAG 1224
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1086 GGGTCAGAGCTTATGGAATCAGAGATCCAAGAACTCTTGCGTGCCGCTGATGTTGATGAA 1145
Query 1225 AGTGGAACAATTGACTATGGAGAGTTCTTAGCTGCAACAATCCACTTGAACAAGCTGGAG 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 AGTGGAACAATTGACTATGGAGAGTTCTTAGCTGCAACAATCCACTTGAACAAGCTGGAG 1205
Query 1285 AGAGAGGAGAATCTAGTAGCTGCATTCTCTTTCTTTGATAAGGATGCAAGTGGTTACATC 1344
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1206 AGAGAGGAGAATCTAGTAGCTGCATTCTCTTTCTTTGACAAAGATGCAAGTGGTTACATT 1265
Query 1345 ACTATCGAAGAGCTTCAACAGGCATGGAAGGAGTTTGGTATAAACGATTCTAATCTTGAT 1404
|||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1266 ACTATCGACGAGCTTCAACAGGCATGGAAGGAGTTTGGTATAAAAGATTCAAATCTTGAT 1325
Query 1405 GAAATGATCAAAGACATTGATCAAGATAATGATGGACAAATAGACTATGGAGAATTTGTG 1464
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1326 GAAATGATCAAAGACATTGATCAAGACAATGATGGACAAATAGACTATGGAGAATTTGTG 1385
Query 1465 GCAATGATGAGGAAAGGAAATGGCA-CTGGAGGAGGGATTGGTCGGAGAACTATGAGGAA 1523
||||||||||||||||||||||||| | ||||| | |||||||||||||||||||||||
Sbjct 1386 GCAATGATGAGGAAAGGAAATGGCAAC-GGAGG-G--ATTGGTCGGAGAACTATGAGGAA 1441
Query 1524 CTCTCTCAACTTTGGAACTACTCTTCCTGATGAGTCTATGAATGTCTGAAGTACTCATTT 1583
| |||||||||||| |||| ||||||||||||| || |||||||||| || |||| ||||
Sbjct 1442 CACTCTCAACTTTGAAACTGCTCTTCCTGATGACTCAATGAATGTCTAAATTACTGATTT 1501
Query 1584 TTAGTGAAAA 1593
| ||||||||
Sbjct 1502 T-AGTGAAAA 1510
> Ahg489809 jgi|Araly1|489809|fgenesh2_kg.6__2943__AT4G09570.1
Length=1700
Score = 418 bits (226), Expect = 7e-116
Identities = 805/1079 (75%), Gaps = 62/1079 (6%)
Strand=Plus/Plus
Query 392 TTGTGATGG-AGCTTTGTGAAGGAGGTGAG-TTGTTTGATAGAATTGTGAAGAGAGGTCA 449
|||| |||| || |||||||||| |||||| || |||||| | ||||| | ||| ||
Sbjct 335 TTGTTATGGAAG-TTTGTGAAGGTGGTGAGCTT-TTTGATCGGATTGTTTCTAAAGGGCA 392
Query 450 TTACAGTGAAAGAGAAGCTGCTAAGCTT-ATCAAGACCATTGTTGGGGTTGTTGAGGCGT 508
|| |||||| | ||||||| |||| || || ||||| ||| |||| ||||||||||| |
Sbjct 393 TTTTAGTGAACGTGAAGCTGTTAAG-TTGATTAAGACTATTCTTGGTGTTGTTGAGGCTT 451
Query 509 GTCACTCTCTTGGTGTTGTTCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTTCTTCTT 568
|||| |||||||||||| | ||||||||||||||||||||||||||||||||| | |
Sbjct 452 GTCATTCTCTTGGTGTTATGCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTGATAGTG 511
Query 569 CT-GATGAAGATGCTTCTCTTAAATCTACTGACTTTGGCCTCTCTGTTTTCTGCACA-CC 626
| | ||| |||||| ||| | |||| || ||||| | ||||| |||| | | ||
Sbjct 512 CCAG-TGATGATGCTAAGCTTCAGGCTACGGATTTTGGTTTGTCTGTCTTCTATA-AGCC 569
Query 627 AGGAGAAGCATTT-TCGGAACTCGTTGGTAGTGCTTACTATGTGGCACCTGAGGTTTT-A 684
||| | || || | | || | ||||| ||| | || ||||| |||||||||||| | |
Sbjct 570 AGG-GCAGTATCTGTATGATGTAGTTGGAAGTCCGTATTATGTTGCACCTGAGGTTCTGA 628
Query 685 CATAA-GCATTATGGTCCTGA-ATGTGACGTATGGAGTGCTGGAGTTATCCTCTACATTC 742
| || | |||||| || || || ||||| ||||| || || |||||||| ||||| |
Sbjct 629 AAAAATG--TTATGGACCAGAGATA-GACGTGTGGAGCGCCGGTGTTATCCTTTACAT-C 684
Query 743 T--CTTATGTGGTTTTCCTCCTTTTTGGGCTGAGAGTGAAAT-AGGCATCTTCAGGA-AG 798
| || | |||| ||||||| |||||||| || | ||| | ||| ||||| || | ||
Sbjct 685 TTACTAA-GTGGAGTTCCTCCGTTTTGGGCAGAAACTGAG-TCAGGAATCTTTAG-ACAG 741
Query 799 ATTTTACA-GGGAAAGTTGGAGTTTGAGATCA-ATCCTTGGCCTAGCATTTCAGAGAG-T 855
|| || || ||||| | | || ||| | ||| |||| |||||||| || ||||| || |
Sbjct 742 ATATTGCAAGGGAA-GATAGATTTTAA-ATCTGATCCGTGGCCTAGTATCTCAGA-AGGT 798
Query 856 GCCAAAGATCTT-ATAAAGAAAATGCTTGAAAGCAATCCTAAAAAGAGGCTAA--CTGCT 912
|| |||||| || || | |||||||| || || | || || || | | || ||||
Sbjct 799 GCTAAAGAT-TTGATTTACAAAATGCTCGATAGGAGCCCCAAGAA-ACG-TATTTCTGCG 855
Query 913 CATC-AAG-TGTTGTGTCATCCGTGGATTGTGGATGAT-AAGGTTGCTCCAGATAAACCT 969
|| | ||| | ||||| || || |||||| | ||||| ||| | || ||||| || |||
Sbjct 856 CA-CGAAGCT-TTGTGCCACCCTTGGATTATTGATGAACAAGCT-GCACCAGACAAGCCT 912
Query 970 TTGGACTGC-GCGGTAGTGTCCCGCCTGAAGAAGTTCTCTGCAA-TGAACAAACTTAAGA 1027
| || | | || || |||| || || ||| ||||||| |||| |||| ||| | ||||
Sbjct 913 CTCGA-TCCAGCAGTCTTGTCACGACTAAAGCAGTTCTC-GCAAATGAATAAAATCAAGA 970
Query 1028 AGATGGCTTTACGAGTTATTGCAGAGAGACTATCTGAGGAAGAAATCGGTGGTCTCAAAG 1087
| ||||| |||||||| ||||| |||||||| || |||||||| || |||||||| || |
Sbjct 971 AAATGGCCTTACGAGTAATTGCTGAGAGACTCTCGGAGGAAGAGATTGGTGGTCTGAAGG 1030
Query 1088 AACTGTTCAAAATGATAGACACAGATAAAAGTGGGACTATCACGTTTGAAGAG-TTAAAA 1146
|| |||||||||||||||| ||||| || ||||| || ||||| |||||||| |||||
Sbjct 1031 AATTGTTCAAAATGATAGATACAGACAACAGTGGAACAATCACCTTTGAAGAACTTAAA- 1089
Query 1147 GATAG-TATGA-GACGTGTTGGGTCAGAGCTTATGGAATCAGAGATCCAAGAACTCTTGC 1204
| || | ||| || | ||||| || || || ||||||||||| || ||| |||||
Sbjct 1090 GC-AGGTCTGAAGA-GAGTTGGATCTGAACTGATGGAATCAGAAATT-AAGT-CTCTTAT 1145
Query 1205 G--TGCGGCTGATGTTGATGAGAGTGGAACAATTGACTATGGAGAGTTCTTAGCTGCAAC 1262
| |||||| ||| | || | || || ||||| || || || || ||| |||| || ||
Sbjct 1146 GGATGCGGCGGATATAGACAACAGCGGGACAATAGATTACGGTGAATTCCTAGCAGCGAC 1205
Query 1263 AATCCACT-TGAACAAGCTGGAGAGAGAGGAGAATCTAGTAGCTGCATTCTCTTTCTTTG 1321
| | || | | |||||| ||||||||||||||||| | || | ||| || || | |||||
Sbjct 1206 ATTACA-TATAAACAAGATGGAGAGAGAGGAGAATTTGGTGGTTGCGTTTTCCTACTTTG 1264
Query 1322 ATAAGGATGCAAGTGGTTACATCACTATCGAAGAGCTTCAACAGGCATGGA-AGGAGTTT 1380
|||| || | || ||||| || || || || ||||||||||| || || | || |||||
Sbjct 1265 ATAAAGACGGTAGCGGTTATATAACCATTGACGAGCTTCAACAAGCCTGCACAG-AGTTT 1323
Query 1381 GGTATAAACGATTCTAATCTTGATGAAATGATCAAAGACATTGATCAAGATAATGATGG 1439
||| | || || ||| || || ||||||||||| ||||||| || ||||||||
Sbjct 1324 GGTCTCTGTGACACTCCTCTCGACGACATGATCAAAGAGATTGATCTTGACAATGATGG 1382
> Ahg476611 jgi|Araly1|476611|fgenesh2_kg.2__1741__AT1G74740.1
Length=2001
Score = 156 bits (84), Expect = 6e-37
Identities = 318/427 (74%), Gaps = 32/427 (7%)
Strand=Plus/Plus
Query 370 GAGGACACCAAAAACGTGCATCTTGTGATGGAGCTTTGTGAAGGAGGTGAG-TTGTTTGA 428
||||||| | | ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 517 GAGGACAACGAGAACGTGCATCTTGTGATGGAGCTTTGTGAAGGAGGTGAGCTT-TTTGA 575
Query 429 TAGAATTGT-GAAGAGAGGTCATTACAGTGAAAGAGAAGCTGCTAAGCTTATCAAG-ACC 486
| | ||||| | |||||| ||||| | || | | || |||| | | | || ||
Sbjct 576 TCGGATTGTTGC-GAGAGGACATTATACAGAGCGTGCGGCGGCTAC-CGTCGCGAGGACG 633
Query 487 ATTGTTGG-GGTTGTTGAGGC-GTGTCACTCTCT-TGGTGTTGTTCATAGAGATCTT-AA 542
|| | || |||||| |||| |||||| | || ||||||| | ||||||||| || ||
Sbjct 634 ATCGC-GGAGGTTGT-GAGGATGTGTCA-TGTCAATGGTGTTATGCATAGAGAT-TTGAA 689
Query 543 GCCTGAGAATTTCTTGTTTTCTT-CTTCTGATGAAGA-TGCTTCTCTTAAATCTACTGAC 600
||||||||||||||||||| || | || | ||| | || | ||||| ||| |||
Sbjct 690 GCCTGAGAATTTCTTGTTTGCTAACAA--GAAGGAGAATTCTGCACTTAAGGCTATTGAT 747
Query 601 TTTGGCCTCTCTGTTTTCTGCACACCAGGAGA-AGCATTTTCGGA-ACTCGTTGGTAGTG 658
||||| | ||||| ||| | ||| || || || ||| | || | | || || |||
Sbjct 748 TTTGGTTTATCTGTGCTCTTTAAACCTGGGGAGAGG-TTTACAGAGATT-GTAGGAAGTC 805
Query 659 CTTACTATGTGGCACCTGAGGTTTT-ACATAAGCA-TTATGGTCCTGAATGT-GACGTAT 715
|||| ||| |||| || || || || | | | | | |||||| || || || || || |
Sbjct 806 CTTATTATATGGCTCCAGAAGTGTTGA-AGA-GAAATTATGGACCAGAG-GTTGATGTGT 862
Query 716 GGAGTGCTGGAGTTATCCTCTACATTCT--CTTATGTGGTTTTCCTCCTTTTTGGGCTGA 773
||||||||||||||||||||||||| || || |||||| |||||||||| ||||| ||
Sbjct 863 GGAGTGCTGGAGTTATCCTCTACAT-CTTGCTC-TGTGGTGTTCCTCCTTTCTGGGCAGA 920
Query 774 GAGTGAA 780
|| ||||
Sbjct 921 GACTGAA 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65972304340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5