BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23590.1
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941888 jgi|Araly1|941888|scaffold_602432.1 1413 0.0
> Ahg941888 jgi|Araly1|941888|scaffold_602432.1
Length=951
Score = 1413 bits (765), Expect = 0.0
Identities = 888/948 (94%), Gaps = 6/948 (1%)
Strand=Plus/Plus
Query 242 TTAGAAGAAGAAAGAAATGGAGGGTTTTGTCGATCACTACATTGTTCTAGGTTTAGCTTC 301
|||||||||||||||||||||||||||||| |||||||| || |||||||||||| | ||
Sbjct 5 TTAGAAGAAGAAAGAAATGGAGGGTTTTGTTGATCACTATATAGTTCTAGGTTTACCCTC 64
Query 302 TGGAGAGGAAGCTCTGAAGCTTACCGAGAAGGAGATTGCAAAAGCATACAAGTTGAAAGC 361
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 GGGAGAGGAAGCTCTCAAGCTTACCGAGAAGGAGATTGCAAAAGCATACAAGTTGAAAGC 124
Query 362 TTTGGACTTGCATCCTGATAAACGCCCTGATGATCCTGATGCCCATGAGAAATTTCAGAG 421
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 125 TTTGGACTTGCATCCTGATAAACGCCCTGATGATCCTGATGCTCATGACAAATTTCAGAG 184
Query 422 GCTTAAGACATCTTACGAGGTTCTCAAAGACGAGAAAGCCCGGAAGCTGTTTGATGATCT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GCTTAAGACATCTTACGAGGTTCTCAAAGACGAGAAAGCCCGGAAGCTGTTTGATGATCT 244
Query 482 TCTTAGAATCCAGCGTGAGAAACAACATAAGAAATCGCAAGTAGATTCCAAGAGGCGTAA 541
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 245 CCTTAGAATCCAGCGTGAGAAACAGCATAAGAAATCGCAAGTAGATTCCAAGAGGCGTAA 304
Query 542 GATGATGTCAGATCTGGAGGAAAGGGAGCGTTCTGCTTTTTCTCCTAATCCTTCCGCTAG 601
||||||||||||||| ||| |||||||||||||||||||||||||| ||||| | |||||
Sbjct 305 GATGATGTCAGATCTCGAGCAAAGGGAGCGTTCTGCTTTTTCTCCTGATCCTGCGGCTAG 364
Query 602 AGCTTATGATGAAGAAGAGAGAATCGCTAGGAAGCTT-AAGGAGGAGATAGATAGGATAC 660
|||||||||||| |||||||||||||| |||||| || |||||||||||||| ||||| |
Sbjct 365 AGCTTATGATGAGGAAGAGAGAATCGCAAGGAAG-TTGAAGGAGGAGATAGAGAGGATTC 423
Query 661 GTGCAAGACATGCgaagaagaaaagtggtttccaaactccagagagtaatgtagatgaaa 720
||||||||||||||||||||||| | |||||| |||||||||||||| |||||||| ||
Sbjct 424 GTGCAAGACATGCGAAGAAGAAAGGCGGTTTCGAAACTCCAGAGAGTGGTGTAGATGGAA 483
Query 721 agagaaaagaagaaagaagTGGTGCTGGAGCTAGTGTTCAACTCGATAAAGAGAGAATGT 780
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||
Sbjct 484 AGAGAAAAGAAGAAAGAAGCGGTACTGGAGCTAGTGTTCAACTCGATAAAGAGAGAGTGT 543
Query 781 TGAAGGTTTCTTGGGAAAAAAGTGGTGAAGGGTATACAGCTGGAAGGCTAAGAGAAGTGT 840
|||||||||||||||||| || ||||||||||||||| || |||||||| ||| |||| |
Sbjct 544 TGAAGGTTTCTTGGGAAACAATTGGTGAAGGGTATACTGCAGGAAGGCTCAGACAAGTTT 603
Query 841 TTTCTGAGTTTGGTGAGGTTGAAGATGTTGTTATTAGGAGTACCAAGAAGAAATGTTCTG 900
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 604 TTTCAGAGTTTGGTGAGGTTGAAGATGTTGTTATTAGGAGTACCAAGAAGAAATGCTCTG 663
Query 901 CTCTTATTGTAATGGCTACAAAGGATGGAGCTGTTGCAGCGACGAGGACATTGTGTGGCA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CTCTTATTGTAATGGCTACAAAGGATGGAGCTGTTGCAGCGACGAGGACATTGTGTGGGG 723
Query 961 ATCTTTCTAATCCATTGTTGGTTGTACCTCTTCAGAAAGCAGCCCAAA-CTGATTTTCTG 1019
||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 724 ATCTTTCTAATCCATTGCTGGTTGTACCTCTTCAGAAAGCAGCCCAAAAC-GATTTTCTG 782
Query 1020 ACGGCTAAGAAATCTGCAGAAGCAGAACCGCAGAGTAACATAGTAGGTGCCGGTCTTCAA 1079
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 783 ACCGCTAAGAAATCTGCAGAAGCAGAACCGCAGAGTAACATAGTAGGTGCTGGTCTTCAA 842
Query 1080 GCTTATGAAGATGCCGTCATGCAAAGACTGCTACAGGCGGCTATGGACCAGAAAAAGCGA 1139
||||||||||| || |||||||||||||| | | |||| || |||||||||||||| |||
Sbjct 843 GCTTATGAAGACGCTGTCATGCAAAGACTTCGAAAGGCAGCAATGGACCAGAAAAATCGA 902
Query 1140 GGGGTTTAAGCCACATGATCAAGAACAAAGC-TCCTTCAAGACCAAAG 1186
|||||| |||||| ||||||||||| ||||| | ||||||||||||||
Sbjct 903 GGGGTT-AAGCCAAATGATCAAGAATAAAGCCTGCTTCAAGACCAAAG 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5