BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23610.2 Length=2108 Score E Sequences producing significant alignments: (Bits) Value Ahg489223 jgi|Araly1|489223|fgenesh2_kg.6__2357__AT5G23610.1 2091 0.0 > Ahg489223 jgi|Araly1|489223|fgenesh2_kg.6__2357__AT5G23610.1 Length=2000 Score = 2091 bits (1132), Expect = 0.0 Identities = 1484/1643 (90%), Gaps = 67/1643 (4%) Strand=Plus/Plus Query 292 GGTGTGTTAAAAAATGTCGCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCT 351 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 254 GGTGTGTTAAAAAATGTCTCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCT 313 Query 352 AAAACGCCGGAAGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCCGAATGATTCTGCTAT 411 ||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 314 AAACCGCCGGAGGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCTGAATGACTCTGCTAT 373 Query 412 GGCTGCTGGTCCGGTGGTTATCAAGCGCGAAACTGAAGATACTCCT-G-G-AG---AAGA 465 |||||||||| ||||||||||||||| |||| |||||||||||||| | | || |||| Sbjct 374 GGCTGCTGGTTCGGTGGTTATCAAGCACGAAGCTGAAGATACTCCTGGAGAAGAAAAAGA 433 Query 466 AGAAGAAGGTAACACCTCTAGAGACAACG-CCTTGGTTGAAGTCAAGTTAGAGAAGCAAG 524 ||||||||||||||||||| || |||||| |||| ||||||||||||||||||||| ||| Sbjct 434 AGAAGAAGGTAACACCTCTGGAAACAACGCCCTT-GTTGAAGTCAAGTTAGAGAAGGAAG 492 Query 525 AAGAACTTGGTCTTCTCGTTACTTGTGGAATCCAGAAACGAAAACGACTCGCTCGTGGAG 584 |||||||||| |||||||| || ||||||||||| ||||||||||||||| ||||||||| Sbjct 493 AAGAACTTGGGCTTCTCGTAACCTGTGGAATCCACAAACGAAAACGACTCTCTCGTGGAG 552 Query 585 CAAGATCTCGAAGATATTCAGACACCAGCTTCGAGGAAAAGCCGATTATTATCCCT-CC- 642 |||||||||||||||||||||| ||||||||||||| |||||| ||||||||| | || Sbjct 553 GAAGATCTCGAAGATATTCAGACTCCAGCTTCGAGGAGAAGCCGCTTATTATCCTTCCCA 612 Query 643 GAAGCACAAGCAGCAGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTCGC 702 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 613 GAA--ACAAGCAGCCGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTTGC 670 Query 703 AGAGCAAACCTTAGCGGATATTATGAAGGAGAAAGGTGCTACTTTTGAAAAACCTGTTAC 762 |||||||| ||||||||| || |||||||||||||||||||||| |||| |||||||| Sbjct 671 CGAGCAAACATTAGCGGATGTTTTGAAGGAGAAAGGTGCTACTTTGGAAACCCCTGTTAC 730 Query 763 GCGACAACTGTTAAGAGTTATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCA 822 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 731 GCGACAACTGTTAAGAGTCATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCA 790 Query 823 TTCCTTGAAGCACATGGATGGCAAAGTAACACCAGGTGGTTCTGATCGGTTTAGGAGGTG 882 || |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 791 TTGCTTGAAGCACATGGATGGTAAAGTAACACCAGGTGGTGCTGATCGGTTTAGGAGGTG 850 Query 883 TTACAATACTGATGGATGCATGCAGTATTGGCTCGAAAGTGCTGACCTTGTCAAGATTAA 942 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 851 TTACAATACTGATGGATGCATGCAGTATTGGCTAGAGAGTGCTGACCTTGTCAAGATTAA 910 Query 943 ACTTGAATCTGGAATTCCTGATCCTACTTGGGTTCCCCCAGCTTGGTGGATGGTTCAGAC 1002 ||||||||| || |||||||| |||||||||||||||||| ||||||||| ||||||||| Sbjct 911 ACTTGAATCCGGTATTCCTGACCCTACTTGGGTTCCCCCATCTTGGTGGAAGGTTCAGAC 970 Query 1003 TGCATCATCACATGATCAATCTGCGGTTACGTCAAAGCTTCTTATGGGGGAGATTGAGCA 1062 || |||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| Sbjct 971 TG---CATCACATGATCCATCTGCGGTTTCGTCAAAGCTTCTTATGGGAGAGATTGAGCA 1027 Query 1063 AATGAAGAGTGAAATCAAAGAACTTGTATCAAAGCAAAATTTACCAGATCATGCTGATGC 1122 |||||||||||| ||||||||||| | |||||||||||| |||||||||||||||||||| Sbjct 1028 AATGAAGAGTGATATCAAAGAACTCGCATCAAAGCAAAAGTTACCAGATCATGCTGATGC 1087 Query 1123 AAATGAGAAACTATTCAAGGAACTTAAGAGTTGGAGGGAAAACACTGATAAGCAAATTGT 1182 |||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||| || Sbjct 1088 AAATGAGAAACTATGCAAGGATCTTATGAGTTGGAGGGTAAACACTGATAAGCAAATCGT 1147 Query 1183 GGAGATCTCAG-AATCGTTGACTTCAACTCAGGGCATGTTCAAGGAATTGAATTCGTGGA 1241 ||||||||| | |||||||||| |||||||||| |||||||||||| |||| |||||||| Sbjct 1148 GGAGATCTC-GAAATCGTTGACGTCAACTCAGGTCATGTTCAAGGATTTGATTTCGTGGA 1206 Query 1242 AAGATAAAGTAGATCAGCAGTTACTGGG-AATTTCAAACACGCTGAGCAATCTGCAGCCG 1300 |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 1207 AAGATAAAGTAGATCAGCAGTT-GGGGGTTATTTCAAACACGCTGAGCAATCTGCAGCCG 1265 Query 1301 AATGGGAGCACGTCATTCAGTCCAGCTCAGGAAAATTGGGAACATATATTGAAGACTTCC 1360 ||||| |||||||||||||||||||||| |||||||||||| || |||||| || | || Sbjct 1266 AATGGTAGCACGTCATTCAGTCCAGCTCCTGAAAATTGGGAAAATTTATTGAGGAATGCC 1325 Query 1361 AATTTGGAAGATTTTACAACGAATGGTTTTGACCAATGGGATGACCTTATTGATGGTCTA 1420 ||| |||| |||||| || | | | |||||||||||||||||||||||| Sbjct 1326 AATATGGATGATTTT---AC-----G----G---AGTGGGATGACCTTATTGATGGTCTA 1370 Query 1421 CCAGAGGCTGTCAGGCCGGAGACCTACGCGCTTCCAACAAATCCTTGCAAAAGCTCTCTC 1480 |||||||||||||||||||| |||||||| ||||||||||| | | || | Sbjct 1371 CCAGAGGCTGTCAGGCCGGAAACCTACGCACTTCCAACAAA----T-------C-CT-TG 1417 Query 1481 CAAGATCAGTCATTGATCTCTCTCCAAGACCAGT-CATTGGTCTCTCTCCAAGACCAGTC 1539 ||| | || | ||| | |||||||||| | | |||| | | | || ||||| Sbjct 1418 CAA-A--AG-C-----TCT-T-TCCAAGACCA-TACCTTGG----T-T-GAGGAACAGTC 1459 Query 1540 ATTGGTCAACGTAGATATGCAAATGACAGAAAGCAGCATGACTAGAGGTGAATCCAGAAG 1599 |||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 1460 ATTGGTCAACATCGATATGCAAATGACAGACAGCTGCATGACTAGAGGTGAATCCAGAAG 1519 Query 1600 CTCCAGTCAGGAAAAAGCTGAAATGACTCCGGGTTCTTCGATTACTGCAGGTCCAAAATC 1659 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1520 CTCCAGTCAGGACAAAGCTGAAATGACTCCGGGTTCTTCGATTACTGCAGGTCCAAAATC 1579 Query 1660 AGATATTGACGACCCAACAATCCAGACTCAGGAAACCTTGAAGGAGTTGGTGACATGGAA 1719 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1580 AGATATTGACGACCCAACTATCCAGACTCAGGAAACCTTGAAGGAGTTGGTGACTTGGAA 1639 Query 1720 AGCCAAAGCGGAGCAGCAGCTGATGGAATTATCAAACGCTGTCCTTGCTCTTAAGGGACA 1779 ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| Sbjct 1640 AGCCAAAGCGGAGCAGCAGCTAACGGAATTGTCAAACGCTGTCCTTGCTCTTAAGGGACA 1699 Query 1780 GAATCAACCCAACTGGCGTTACCCGTGAAGACTAGGCACAGATTGATCAATGATTTTGCT 1839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1700 GAATCAACCCAACTGGCGTTACCCGTGAAGACTAGGCACAGATTGATCAATGATTTCGCT 1759 Query 1840 TTAACTAGTCGATTCCACCTGCATAGAATCCCTTAGAGACATGTACAGGGTTTCTGATAA 1899 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1760 TTAACCAGGCGATTCCACCTGCATAGAATCCCTTAGAGACATGTACAGGGTTTCTGATAA 1819 Query 1900 AACTAAACCaaaaaaaaaaaaaa 1922 |||||||| |||||||||| ||| Sbjct 1820 AACTAAAC-AAAAAAAAAACAAA 1841 Score = 1777 bits (962), Expect = 0.0 Identities = 1335/1501 (89%), Gaps = 82/1501 (5%) Strand=Plus/Plus Query 1 ATTGAAAAGGGGGAAGAAGAGAAGAATTTAGGGATTTTGGCGGCTTTAGGGctctctctc 60 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATTGAAAAGGGGGAAGAAGGGAAGAATTTAGGGATTTTGGCGGCTTTAGGGCTCTCTCTC 60 Query 61 agtctctctctactcccgtcgtccgcttctttttccatttccctctctgcgctctcg--t 118 ||||||||| ||| | | | ||| |||||||||||||||||||||| |||| | | Sbjct 61 AGTCTCTCT--ACT----T-G-C-GCTGCTTTTTCCATTTCCCTCTCTGCTCTCTGGCCT 111 Query 119 -c-t-ttgtcttcttcttcttctctATCCCGATTCTACGGTGGCGCTCTGATCCCTAAAT 175 | | ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 112 TCGTCTTGTCTTCTTCTTCTTCTCTATCTCGATTCTACGGTGTCGCTCTGATCCCTAAAT 171 Query 176 TTCTAGGTTTTACCATTTTC-TGTTTCCAATTTCAATCGCGATCCGTGCTTTTTTCGATG 234 ||||||||||| || | ||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 172 TTCTAGGTTTTGCC-TCTTCCTGTTTCCAATTTCAATCGCGATCCGTGCTTTTT-CGATG 229 Query 235 GCGTCGATTTTGATGCTGTGAGAAGAGTTACGCCGTCGCCGCCTCTTAGTGTTCTTCGGT 294 | | | | ||| | |||||||||||||||| | |||| | | Sbjct 230 -C-T-G-T---GAT------A-AAGAGTTACGCCGTCG--G-------GTGT-----G-T 260 Query 295 GTGTTAAAAAATGTCGCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCTAAA 354 | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 261 -T---AAAAAATGTCTCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCTAAA 316 Query 355 ACGCCGGAAGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCCGAATGATTCTGCTATGGC 414 ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 317 CCGCCGGAGGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCTGAATGACTCTGCTATGGC 376 Query 415 TGCTGGTCCGGTGGTTATCAAGCGCGAAACTGAAGATACTCCTGGAGAAGAA---GAAGA 471 ||||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||||| Sbjct 377 TGCTGGTTCGGTGGTTATCAAGCACGAAGCTGAAGATACTCCTGGAGAAGAAAAAGAAGA 436 Query 472 AG--G-TAACACCTCTAGAGACAACGCC-TTGGTTGAAGTCAAGTTAGAGAAGCAAGAAG 527 || | |||||||||| || |||||||| ||| |||||||||||||||||||| |||||| Sbjct 437 AGAAGGTAACACCTCTGGAAACAACGCCCTTG-TTGAAGTCAAGTTAGAGAAGGAAGAAG 495 Query 528 AACTTGGTCTTCTCGTTACTTGTGGAATCCAGAAACGAAAACGACTCGCTCGTGGAGCAA 587 ||||||| |||||||| || ||||||||||| ||||||||||||||| ||||||||| || Sbjct 496 AACTTGGGCTTCTCGTAACCTGTGGAATCCACAAACGAAAACGACTCTCTCGTGGAGGAA 555 Query 588 GATCTCGAAGATATTCAGACACCAGCTTCGAGGAAAAGCCGATTATTATCCCTCCGAAGC 647 |||||||||||||||||||| ||||||||||||| |||||| ||||||||| ||| | | Sbjct 556 GATCTCGAAGATATTCAGACTCCAGCTTCGAGGAGAAGCCGCTTATTATCCTTCCCA-GA 614 Query 648 A-CAAGCAGCAGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTCGCAGAG 706 | |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 615 AACAAGCAGCCGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTTGCCGAG 674 Query 707 CAAACCTTAGCGGATATTATGAAGGAGAAAGGTGCTACTTTTGAAAAACCTGTTACGCGA 766 ||||| ||||||||| || |||||||||||||||||||||| |||| |||||||||||| Sbjct 675 CAAACATTAGCGGATGTTTTGAAGGAGAAAGGTGCTACTTTGGAAACCCCTGTTACGCGA 734 Query 767 CAACTGTTAAGAGTTATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCATTCC 826 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 735 CAACTGTTAAGAGTCATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCATTGC 794 Query 827 TTGAAGCACATGGATGGCAAAGTAACACCAGGTGGTTCTGATCGGTTTAGGAGGTGTTAC 886 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 795 TTGAAGCACATGGATGGTAAAGTAACACCAGGTGGTGCTGATCGGTTTAGGAGGTGTTAC 854 Query 887 AATACTGATGGATGCATGCAGTATTGGCTCGAAAGTGCTGACCTTGTCAAGATTAAACTT 946 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 855 AATACTGATGGATGCATGCAGTATTGGCTAGAGAGTGCTGACCTTGTCAAGATTAAACTT 914 Query 947 GAATCTGGAATTCCTGATCCTACTTGGGTTCCCCCAGCTTGGTGGATGGTTCAGACTGCA 1006 ||||| || |||||||| |||||||||||||||||| ||||||||| ||||||||||||| Sbjct 915 GAATCCGGTATTCCTGACCCTACTTGGGTTCCCCCATCTTGGTGGAAGGTTCAGACTGCA 974 Query 1007 TCATCACATGATCAATCTGCGGTTACGTCAAAGCTTCTTATGGGGGAGATTGAGCAAATG 1066 ||| || ||||| |||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 975 TCA-CA--TGATCCATCTGCGGTTTCGTCAAAGCTTCTTATGGGAGAGATTGAGCAAATG 1031 Query 1067 AAGAGTGAAATCAAAGAACTTGTATCAAAGCAAAATTTACCAGATCATGCTGATGCAAAT 1126 |||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||| Sbjct 1032 AAGAGTGATATCAAAGAACTCGCATCAAAGCAAAAGTTACCAGATCATGCTGATGCAAAT 1091 Query 1127 GAGAAACTATTCAAGGAACTTAAGAGTTGGAGGGAAAACACTGATAAGCAAATTGTGGAG 1186 |||||||||| |||||| |||| ||||||||||| |||||||||||||||||| |||||| Sbjct 1092 GAGAAACTATGCAAGGATCTTATGAGTTGGAGGGTAAACACTGATAAGCAAATCGTGGAG 1151 Query 1187 ATCTCAGAA-TCGTTGACTTCAACTCAGGGCATGTTCAAGGAATTGAATTCGTGGAAAGA 1245 ||||| ||| |||||||| |||||||||| |||||||||||| |||| |||||||||||| Sbjct 1152 ATCTC-GAAATCGTTGACGTCAACTCAGGTCATGTTCAAGGATTTGATTTCGTGGAAAGA 1210 Query 1246 TAAAGTAGATCAGCAGTTACTGGGA-ATTTCAAACACGCTGAGCAATCTGCAGCCGAATG 1304 |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1211 TAAAGTAGATCAGCAGTTGG-GGGTTATTTCAAACACGCTGAGCAATCTGCAGCCGAATG 1269 Query 1305 GGAGCACGTCATTCAGTCCAGCTCAGGAAAATTGGGAACATATATTGAAGACTTCCAATT 1364 | |||||||||||||||||||||| |||||||||||| || |||||| || | ||||| Sbjct 1270 GTAGCACGTCATTCAGTCCAGCTCCTGAAAATTGGGAAAATTTATTGAGGAATGCCAATA 1329 Query 1365 TGGAAGATTTTACAACGAATGGTTTTGACCAATGGGATGACCTTATTGATGGTCTACCAG 1424 |||| |||||||| || | | | || |||||||||||||||||||||||| Sbjct 1330 TGGATGATTTTACG--GA--G-T---G------GG-ATGACCTTATTGATGGTCTACCAG 1374 Query 1425 AGGCTGTCAGGCCGGAGACCTACGCGCTTCCAACAAATCCTTGCAAAAGCTCTCTCCAAG 1484 |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| Sbjct 1375 AGGCTGTCAGGCCGGAAACCTACGCACTTCCAACAAATCCTTGCAAAAGCTCTTTCCAAG 1434 Query 1485 A 1485 | Sbjct 1435 A 1435 Score = 239 bits (129), Expect = 7e-62 Identities = 151/160 (94%), Gaps = 7/160 (4%) Strand=Plus/Plus Query 1955 GCATCTGAAAAGCTTAGGAACAGGTAGGACTTAAGTAAGTCATATAGAAGAAGTTTGAAG 2014 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1842 GCATCTGAAAAGCTTAGGAACAGGTAGGACTTAAGTAAGTCATATAGAAGAAGTCTGAAG 1901 Query 2015 TGAAAATTTGAAGGT--AGA-GATGCTTT-AATGGTAATTGTTTTGCTGTATATTCTCTC 2070 || |||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1902 TG-AAATTTGAAGGTAGAGATGATGCTTTAAATGGTAATTGTTTTGCTGTATATTCTCTC 1960 Query 2071 TCGGAT--CTCTTATTCAACAATGAAGCTTACTTTTGAGT 2108 |||||| |||||||||||||||||||||| ||||||||| Sbjct 1961 TCGGATGACTCTTATTCAACAATGAAGCTTGCTTTTGAGT 2000 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79303890090 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5