BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23610.2
Length=2108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489223 jgi|Araly1|489223|fgenesh2_kg.6__2357__AT5G23610.1 2091 0.0
> Ahg489223 jgi|Araly1|489223|fgenesh2_kg.6__2357__AT5G23610.1
Length=2000
Score = 2091 bits (1132), Expect = 0.0
Identities = 1484/1643 (90%), Gaps = 67/1643 (4%)
Strand=Plus/Plus
Query 292 GGTGTGTTAAAAAATGTCGCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCT 351
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 254 GGTGTGTTAAAAAATGTCTCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCT 313
Query 352 AAAACGCCGGAAGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCCGAATGATTCTGCTAT 411
||| ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 314 AAACCGCCGGAGGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCTGAATGACTCTGCTAT 373
Query 412 GGCTGCTGGTCCGGTGGTTATCAAGCGCGAAACTGAAGATACTCCT-G-G-AG---AAGA 465
|||||||||| ||||||||||||||| |||| |||||||||||||| | | || ||||
Sbjct 374 GGCTGCTGGTTCGGTGGTTATCAAGCACGAAGCTGAAGATACTCCTGGAGAAGAAAAAGA 433
Query 466 AGAAGAAGGTAACACCTCTAGAGACAACG-CCTTGGTTGAAGTCAAGTTAGAGAAGCAAG 524
||||||||||||||||||| || |||||| |||| ||||||||||||||||||||| |||
Sbjct 434 AGAAGAAGGTAACACCTCTGGAAACAACGCCCTT-GTTGAAGTCAAGTTAGAGAAGGAAG 492
Query 525 AAGAACTTGGTCTTCTCGTTACTTGTGGAATCCAGAAACGAAAACGACTCGCTCGTGGAG 584
|||||||||| |||||||| || ||||||||||| ||||||||||||||| |||||||||
Sbjct 493 AAGAACTTGGGCTTCTCGTAACCTGTGGAATCCACAAACGAAAACGACTCTCTCGTGGAG 552
Query 585 CAAGATCTCGAAGATATTCAGACACCAGCTTCGAGGAAAAGCCGATTATTATCCCT-CC- 642
|||||||||||||||||||||| ||||||||||||| |||||| ||||||||| | ||
Sbjct 553 GAAGATCTCGAAGATATTCAGACTCCAGCTTCGAGGAGAAGCCGCTTATTATCCTTCCCA 612
Query 643 GAAGCACAAGCAGCAGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTCGC 702
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 613 GAA--ACAAGCAGCCGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTTGC 670
Query 703 AGAGCAAACCTTAGCGGATATTATGAAGGAGAAAGGTGCTACTTTTGAAAAACCTGTTAC 762
|||||||| ||||||||| || |||||||||||||||||||||| |||| ||||||||
Sbjct 671 CGAGCAAACATTAGCGGATGTTTTGAAGGAGAAAGGTGCTACTTTGGAAACCCCTGTTAC 730
Query 763 GCGACAACTGTTAAGAGTTATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCA 822
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 731 GCGACAACTGTTAAGAGTCATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCA 790
Query 823 TTCCTTGAAGCACATGGATGGCAAAGTAACACCAGGTGGTTCTGATCGGTTTAGGAGGTG 882
|| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 791 TTGCTTGAAGCACATGGATGGTAAAGTAACACCAGGTGGTGCTGATCGGTTTAGGAGGTG 850
Query 883 TTACAATACTGATGGATGCATGCAGTATTGGCTCGAAAGTGCTGACCTTGTCAAGATTAA 942
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 851 TTACAATACTGATGGATGCATGCAGTATTGGCTAGAGAGTGCTGACCTTGTCAAGATTAA 910
Query 943 ACTTGAATCTGGAATTCCTGATCCTACTTGGGTTCCCCCAGCTTGGTGGATGGTTCAGAC 1002
||||||||| || |||||||| |||||||||||||||||| ||||||||| |||||||||
Sbjct 911 ACTTGAATCCGGTATTCCTGACCCTACTTGGGTTCCCCCATCTTGGTGGAAGGTTCAGAC 970
Query 1003 TGCATCATCACATGATCAATCTGCGGTTACGTCAAAGCTTCTTATGGGGGAGATTGAGCA 1062
|| |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||
Sbjct 971 TG---CATCACATGATCCATCTGCGGTTTCGTCAAAGCTTCTTATGGGAGAGATTGAGCA 1027
Query 1063 AATGAAGAGTGAAATCAAAGAACTTGTATCAAAGCAAAATTTACCAGATCATGCTGATGC 1122
|||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 1028 AATGAAGAGTGATATCAAAGAACTCGCATCAAAGCAAAAGTTACCAGATCATGCTGATGC 1087
Query 1123 AAATGAGAAACTATTCAAGGAACTTAAGAGTTGGAGGGAAAACACTGATAAGCAAATTGT 1182
|||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||| ||
Sbjct 1088 AAATGAGAAACTATGCAAGGATCTTATGAGTTGGAGGGTAAACACTGATAAGCAAATCGT 1147
Query 1183 GGAGATCTCAG-AATCGTTGACTTCAACTCAGGGCATGTTCAAGGAATTGAATTCGTGGA 1241
||||||||| | |||||||||| |||||||||| |||||||||||| |||| ||||||||
Sbjct 1148 GGAGATCTC-GAAATCGTTGACGTCAACTCAGGTCATGTTCAAGGATTTGATTTCGTGGA 1206
Query 1242 AAGATAAAGTAGATCAGCAGTTACTGGG-AATTTCAAACACGCTGAGCAATCTGCAGCCG 1300
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1207 AAGATAAAGTAGATCAGCAGTT-GGGGGTTATTTCAAACACGCTGAGCAATCTGCAGCCG 1265
Query 1301 AATGGGAGCACGTCATTCAGTCCAGCTCAGGAAAATTGGGAACATATATTGAAGACTTCC 1360
||||| |||||||||||||||||||||| |||||||||||| || |||||| || | ||
Sbjct 1266 AATGGTAGCACGTCATTCAGTCCAGCTCCTGAAAATTGGGAAAATTTATTGAGGAATGCC 1325
Query 1361 AATTTGGAAGATTTTACAACGAATGGTTTTGACCAATGGGATGACCTTATTGATGGTCTA 1420
||| |||| |||||| || | | | ||||||||||||||||||||||||
Sbjct 1326 AATATGGATGATTTT---AC-----G----G---AGTGGGATGACCTTATTGATGGTCTA 1370
Query 1421 CCAGAGGCTGTCAGGCCGGAGACCTACGCGCTTCCAACAAATCCTTGCAAAAGCTCTCTC 1480
|||||||||||||||||||| |||||||| ||||||||||| | | || |
Sbjct 1371 CCAGAGGCTGTCAGGCCGGAAACCTACGCACTTCCAACAAA----T-------C-CT-TG 1417
Query 1481 CAAGATCAGTCATTGATCTCTCTCCAAGACCAGT-CATTGGTCTCTCTCCAAGACCAGTC 1539
||| | || | ||| | |||||||||| | | |||| | | | || |||||
Sbjct 1418 CAA-A--AG-C-----TCT-T-TCCAAGACCA-TACCTTGG----T-T-GAGGAACAGTC 1459
Query 1540 ATTGGTCAACGTAGATATGCAAATGACAGAAAGCAGCATGACTAGAGGTGAATCCAGAAG 1599
|||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1460 ATTGGTCAACATCGATATGCAAATGACAGACAGCTGCATGACTAGAGGTGAATCCAGAAG 1519
Query 1600 CTCCAGTCAGGAAAAAGCTGAAATGACTCCGGGTTCTTCGATTACTGCAGGTCCAAAATC 1659
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 CTCCAGTCAGGACAAAGCTGAAATGACTCCGGGTTCTTCGATTACTGCAGGTCCAAAATC 1579
Query 1660 AGATATTGACGACCCAACAATCCAGACTCAGGAAACCTTGAAGGAGTTGGTGACATGGAA 1719
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1580 AGATATTGACGACCCAACTATCCAGACTCAGGAAACCTTGAAGGAGTTGGTGACTTGGAA 1639
Query 1720 AGCCAAAGCGGAGCAGCAGCTGATGGAATTATCAAACGCTGTCCTTGCTCTTAAGGGACA 1779
||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 1640 AGCCAAAGCGGAGCAGCAGCTAACGGAATTGTCAAACGCTGTCCTTGCTCTTAAGGGACA 1699
Query 1780 GAATCAACCCAACTGGCGTTACCCGTGAAGACTAGGCACAGATTGATCAATGATTTTGCT 1839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1700 GAATCAACCCAACTGGCGTTACCCGTGAAGACTAGGCACAGATTGATCAATGATTTCGCT 1759
Query 1840 TTAACTAGTCGATTCCACCTGCATAGAATCCCTTAGAGACATGTACAGGGTTTCTGATAA 1899
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760 TTAACCAGGCGATTCCACCTGCATAGAATCCCTTAGAGACATGTACAGGGTTTCTGATAA 1819
Query 1900 AACTAAACCaaaaaaaaaaaaaa 1922
|||||||| |||||||||| |||
Sbjct 1820 AACTAAAC-AAAAAAAAAACAAA 1841
Score = 1777 bits (962), Expect = 0.0
Identities = 1335/1501 (89%), Gaps = 82/1501 (5%)
Strand=Plus/Plus
Query 1 ATTGAAAAGGGGGAAGAAGAGAAGAATTTAGGGATTTTGGCGGCTTTAGGGctctctctc 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTGAAAAGGGGGAAGAAGGGAAGAATTTAGGGATTTTGGCGGCTTTAGGGCTCTCTCTC 60
Query 61 agtctctctctactcccgtcgtccgcttctttttccatttccctctctgcgctctcg--t 118
||||||||| ||| | | | ||| |||||||||||||||||||||| |||| | |
Sbjct 61 AGTCTCTCT--ACT----T-G-C-GCTGCTTTTTCCATTTCCCTCTCTGCTCTCTGGCCT 111
Query 119 -c-t-ttgtcttcttcttcttctctATCCCGATTCTACGGTGGCGCTCTGATCCCTAAAT 175
| | ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 112 TCGTCTTGTCTTCTTCTTCTTCTCTATCTCGATTCTACGGTGTCGCTCTGATCCCTAAAT 171
Query 176 TTCTAGGTTTTACCATTTTC-TGTTTCCAATTTCAATCGCGATCCGTGCTTTTTTCGATG 234
||||||||||| || | ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 172 TTCTAGGTTTTGCC-TCTTCCTGTTTCCAATTTCAATCGCGATCCGTGCTTTTT-CGATG 229
Query 235 GCGTCGATTTTGATGCTGTGAGAAGAGTTACGCCGTCGCCGCCTCTTAGTGTTCTTCGGT 294
| | | | ||| | |||||||||||||||| | |||| | |
Sbjct 230 -C-T-G-T---GAT------A-AAGAGTTACGCCGTCG--G-------GTGT-----G-T 260
Query 295 GTGTTAAAAAATGTCGCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCTAAA 354
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 -T---AAAAAATGTCTCCTCCTCTCCGAGAAAAAACCCTAGCCGCGATCTATAATCTAAA 316
Query 355 ACGCCGGAAGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCCGAATGATTCTGCTATGGC 414
||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 317 CCGCCGGAGGCGTTCTGACAAGAAGATTTGTCGGAAGGAGCTGAATGACTCTGCTATGGC 376
Query 415 TGCTGGTCCGGTGGTTATCAAGCGCGAAACTGAAGATACTCCTGGAGAAGAA---GAAGA 471
||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||||
Sbjct 377 TGCTGGTTCGGTGGTTATCAAGCACGAAGCTGAAGATACTCCTGGAGAAGAAAAAGAAGA 436
Query 472 AG--G-TAACACCTCTAGAGACAACGCC-TTGGTTGAAGTCAAGTTAGAGAAGCAAGAAG 527
|| | |||||||||| || |||||||| ||| |||||||||||||||||||| ||||||
Sbjct 437 AGAAGGTAACACCTCTGGAAACAACGCCCTTG-TTGAAGTCAAGTTAGAGAAGGAAGAAG 495
Query 528 AACTTGGTCTTCTCGTTACTTGTGGAATCCAGAAACGAAAACGACTCGCTCGTGGAGCAA 587
||||||| |||||||| || ||||||||||| ||||||||||||||| ||||||||| ||
Sbjct 496 AACTTGGGCTTCTCGTAACCTGTGGAATCCACAAACGAAAACGACTCTCTCGTGGAGGAA 555
Query 588 GATCTCGAAGATATTCAGACACCAGCTTCGAGGAAAAGCCGATTATTATCCCTCCGAAGC 647
|||||||||||||||||||| ||||||||||||| |||||| ||||||||| ||| | |
Sbjct 556 GATCTCGAAGATATTCAGACTCCAGCTTCGAGGAGAAGCCGCTTATTATCCTTCCCA-GA 614
Query 648 A-CAAGCAGCAGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTCGCAGAG 706
| |||||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 615 AACAAGCAGCCGAGAGTATTAACCACTCGATGGAACAATGAAAGGATTAAGTTTGCCGAG 674
Query 707 CAAACCTTAGCGGATATTATGAAGGAGAAAGGTGCTACTTTTGAAAAACCTGTTACGCGA 766
||||| ||||||||| || |||||||||||||||||||||| |||| ||||||||||||
Sbjct 675 CAAACATTAGCGGATGTTTTGAAGGAGAAAGGTGCTACTTTGGAAACCCCTGTTACGCGA 734
Query 767 CAACTGTTAAGAGTTATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCATTCC 826
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 735 CAACTGTTAAGAGTCATTGCTCGAAGCAAGATAGGTGATACTGGGCTCTTGGATCATTGC 794
Query 827 TTGAAGCACATGGATGGCAAAGTAACACCAGGTGGTTCTGATCGGTTTAGGAGGTGTTAC 886
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 795 TTGAAGCACATGGATGGTAAAGTAACACCAGGTGGTGCTGATCGGTTTAGGAGGTGTTAC 854
Query 887 AATACTGATGGATGCATGCAGTATTGGCTCGAAAGTGCTGACCTTGTCAAGATTAAACTT 946
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 855 AATACTGATGGATGCATGCAGTATTGGCTAGAGAGTGCTGACCTTGTCAAGATTAAACTT 914
Query 947 GAATCTGGAATTCCTGATCCTACTTGGGTTCCCCCAGCTTGGTGGATGGTTCAGACTGCA 1006
||||| || |||||||| |||||||||||||||||| ||||||||| |||||||||||||
Sbjct 915 GAATCCGGTATTCCTGACCCTACTTGGGTTCCCCCATCTTGGTGGAAGGTTCAGACTGCA 974
Query 1007 TCATCACATGATCAATCTGCGGTTACGTCAAAGCTTCTTATGGGGGAGATTGAGCAAATG 1066
||| || ||||| |||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 975 TCA-CA--TGATCCATCTGCGGTTTCGTCAAAGCTTCTTATGGGAGAGATTGAGCAAATG 1031
Query 1067 AAGAGTGAAATCAAAGAACTTGTATCAAAGCAAAATTTACCAGATCATGCTGATGCAAAT 1126
|||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||||
Sbjct 1032 AAGAGTGATATCAAAGAACTCGCATCAAAGCAAAAGTTACCAGATCATGCTGATGCAAAT 1091
Query 1127 GAGAAACTATTCAAGGAACTTAAGAGTTGGAGGGAAAACACTGATAAGCAAATTGTGGAG 1186
|||||||||| |||||| |||| ||||||||||| |||||||||||||||||| ||||||
Sbjct 1092 GAGAAACTATGCAAGGATCTTATGAGTTGGAGGGTAAACACTGATAAGCAAATCGTGGAG 1151
Query 1187 ATCTCAGAA-TCGTTGACTTCAACTCAGGGCATGTTCAAGGAATTGAATTCGTGGAAAGA 1245
||||| ||| |||||||| |||||||||| |||||||||||| |||| ||||||||||||
Sbjct 1152 ATCTC-GAAATCGTTGACGTCAACTCAGGTCATGTTCAAGGATTTGATTTCGTGGAAAGA 1210
Query 1246 TAAAGTAGATCAGCAGTTACTGGGA-ATTTCAAACACGCTGAGCAATCTGCAGCCGAATG 1304
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1211 TAAAGTAGATCAGCAGTTGG-GGGTTATTTCAAACACGCTGAGCAATCTGCAGCCGAATG 1269
Query 1305 GGAGCACGTCATTCAGTCCAGCTCAGGAAAATTGGGAACATATATTGAAGACTTCCAATT 1364
| |||||||||||||||||||||| |||||||||||| || |||||| || | |||||
Sbjct 1270 GTAGCACGTCATTCAGTCCAGCTCCTGAAAATTGGGAAAATTTATTGAGGAATGCCAATA 1329
Query 1365 TGGAAGATTTTACAACGAATGGTTTTGACCAATGGGATGACCTTATTGATGGTCTACCAG 1424
|||| |||||||| || | | | || ||||||||||||||||||||||||
Sbjct 1330 TGGATGATTTTACG--GA--G-T---G------GG-ATGACCTTATTGATGGTCTACCAG 1374
Query 1425 AGGCTGTCAGGCCGGAGACCTACGCGCTTCCAACAAATCCTTGCAAAAGCTCTCTCCAAG 1484
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1375 AGGCTGTCAGGCCGGAAACCTACGCACTTCCAACAAATCCTTGCAAAAGCTCTTTCCAAG 1434
Query 1485 A 1485
|
Sbjct 1435 A 1435
Score = 239 bits (129), Expect = 7e-62
Identities = 151/160 (94%), Gaps = 7/160 (4%)
Strand=Plus/Plus
Query 1955 GCATCTGAAAAGCTTAGGAACAGGTAGGACTTAAGTAAGTCATATAGAAGAAGTTTGAAG 2014
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1842 GCATCTGAAAAGCTTAGGAACAGGTAGGACTTAAGTAAGTCATATAGAAGAAGTCTGAAG 1901
Query 2015 TGAAAATTTGAAGGT--AGA-GATGCTTT-AATGGTAATTGTTTTGCTGTATATTCTCTC 2070
|| |||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1902 TG-AAATTTGAAGGTAGAGATGATGCTTTAAATGGTAATTGTTTTGCTGTATATTCTCTC 1960
Query 2071 TCGGAT--CTCTTATTCAACAATGAAGCTTACTTTTGAGT 2108
|||||| |||||||||||||||||||||| |||||||||
Sbjct 1961 TCGGATGACTCTTATTCAACAATGAAGCTTGCTTTTGAGT 2000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79303890090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5