BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23650.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894246 jgi|Araly1|894246|Al_scaffold_0006_2242 1210 0.0
> Ahg894246 jgi|Araly1|894246|Al_scaffold_0006_2242
Length=984
Score = 1210 bits (655), Expect = 0.0
Identities = 895/1006 (89%), Gaps = 36/1006 (4%)
Strand=Plus/Plus
Query 12 ACAGGAAATTAGTGTCGGATCGTCTTGGAGCAAGGATGATGATATTGCTTTCGAGAAAGC 71
|||| ||| ||||| || || ||||||| |||||||||||||||||||||||||| |||
Sbjct 12 ACAGAAAACAAGTGTTGGTTCATCTTGGAACAAGGATGATGATATTGCTTTCGAGAGAGC 71
Query 72 CCTTGCAATTTATAACGATAAAACAGAGATTCGTTGGaaaaaaaTTGCTACAGTTGTTCC 131
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 72 CCTTGCAATTTATAACGATAAAACAGAGATTCGTTGGAAAAAAATTGCAACAGTTGTTCC 131
Query 132 GGGAAAAACTTTAGAACAAGTTATAGAGCATTACAACATTTTAGCTCGTGATGTTATGTT 191
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 132 TGGAAAAACTTTAGAACAAGTTATAGAGCATTACAATATTTTAGCTCGTGATGTTATGTT 191
Query 192 GATTGAATCTGGATGTGTACGTCTTCCAGATTATGATGATTTTTTAGAAGAACCAAATCA 251
|||||||||||||||| ||| |||||| |||||||| | |||| |||||||||||||||
Sbjct 192 GATTGAATCTGGATGTATACCTCTTCCTGATTATGA--A-TTTTCAGAAGAACCAAATCA 248
Query 252 CAATGCTTTTGGTAAAGAAAGAAGCATATTGGAAGGTGGCAACGATCGCAAATATGAGTC 311
||||| || ||||||||||||||||||||||||||||||| |||| |||| ||||
Sbjct 249 GGATGCTAGTGATAAAGAAAGAAGCATATTGGAAGGTGGCAACAATCGTAAATGCGAGTT 308
Query 312 TAAACACAAAGGTAAATCAAAACTAAAGCAAAAACGACG-AAGGGGTGTTCCTTGGAAGC 370
||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 309 TAAGCACAAAGGTAAATCAAAACTAAAGCAAAAACGACGAAAGGGG-ATTCCTTGGACTT 367
Query 371 CTTTTGAACACAGACAATTTCTGCATGGTTTGAAAAAATATGGGAAAGGTGATTGGCGTA 430
| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 368 CAATTGAACACAGACAATTTTTGCTTGGTTTGAAAAAATATGGGAAAGGTGATTGGCGTA 427
Query 431 GTATTTCTCGTCACTGTGTAGTGACAAGAACATCAACTCAGGTTGCAAGTCATGCTCAAA 490
| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GCATTTCTCGCCACTGCGTGGTGACAAGAACATCAACTCAGGTTGCAAGTCATGCTCAAA 487
Query 491 AATACTTTGCACATATCAACTCAGAGGATAA-AAAGAGAAAGAGGCCAAGCATTCATGAC 549
||||||||||||||||||||||| | ||||| ||| | ||||||||||||||||||||||
Sbjct 488 AATACTTTGCACATATCAACTCAAAAGATAAGAAAAA-AAAGAGGCCAAGCATTCATGAC 546
Query 550 ATCACTATTGCGGaaaacaaaagtatctcaacaaaacaaagaccaatcacatggcaaaaa 609
||||| ||| |||||| | | || ||| | | |||||||||||||||
Sbjct 547 ATCACCGTTGTGGAAAA-A-------C--AA-AAA-C-----C-AATCACATGGCAAAAC 588
Query 610 ataaacaacaaTGGTGCTACTGCTTCCAACACTCAAGCCAATCAAACCACTTTGCAACCA 669
| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 589 AGAAACATCAATGGTGCTACTACTTCCAACACTCAAGCCAATCAAACCACTTTGCAACAA 648
Query 670 TCACTTGACATTCCTATATATGGTACACACAACAACATATGGAATGCACAAGCCACTCAA 729
||||| || |||||||||||| ||| || ||||||||||||| ||||||| ||||||
Sbjct 649 TCACTAAACCTTCCTATATATG--ACAGACC-CAACATATGGAATACACAAGCTACTCAA 705
Query 730 GTCATTTCACAGCCATCACAAAACCATCCTACATATGATGCACCCATCATATGGAACACA 789
| ||||||||| ||||||| ||||||||||||||||| |||| ||| || ||||||||||
Sbjct 706 GCCATTTCACAACCATCACGAAACCATCCTACATATGGTGCATCCACCACATGGAACACA 765
Query 790 CAAGTCGCTTCGCAACCATCGGCCAATATTCCTATGTATGGAACGTCCACCATAAGTCAA 849
|||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 766 CAAGCCGCTTTGCAACCATCAGCCAATATTCCTATGTATGGAACGTCCACCATAAGCCAA 825
Query 850 CCAATGGTTGGACCAATGCTCTCACCTTTTGGAACAAACTTGAACCACT-TGGCTCCATC 908
|||||||||||||||||||||||| |||||||||||||| |||||| | |||||||| |
Sbjct 826 CCAATGGTTGGACCAATGCTCTCAACTTTTGGAACAAACCTGAACCG-TATGGCTCCACC 884
Query 909 TCATATGACTTCTGGAGTTCAACATGATTCAGTACCTTACTACTCAGGTCCTAGTGCACC 968
||| ||||||||||||||||||||| | | |||||||||||| ||||||||||||||
Sbjct 885 TCACATGACTTCTGGAGTTCAACAT-A---A--ACCTTACTACTCGGGTCCTAGTGCACC 938
Query 969 GATCAACATGGATTCAATACCATACAACATTGACTTATATAACTAG 1014
||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 939 AATCAACATGGATTCAATTCCATACAACATTGACTTATATAACTAG 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5