BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23660.1
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484952 jgi|Araly1|484952|fgenesh2_kg.5__944__AT5G23660.1 1746 0.0
Ahg485228 jgi|Araly1|485228|fgenesh2_kg.5__1220__AT3G48740.1 730 0.0
> Ahg484952 jgi|Araly1|484952|fgenesh2_kg.5__944__AT5G23660.1
Length=1247
Score = 1746 bits (945), Expect = 0.0
Identities = 1135/1225 (93%), Gaps = 19/1225 (2%)
Strand=Plus/Plus
Query 54 TCTTAC-TACTTCGAAGAAATCTTCTTCTCCCTTCCaaaaaaaCAATCCCTAAACCCGGA 112
|||| | ||||||||||||||||||||| ||||| | ||||| ||| ||||||||||||
Sbjct 33 TCTTTCTTACTTCGAAGAAATCTTCTTCCCCCTT-C-GAAAAA-AAT-CCTAAACCCGGA 88
Query 113 ACCAAAGATCGACATTCATGGCTCTCTTCGACACTCATAACACATGGGCCTTTGTTTTCG 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 ACCAAAGATCGACATTCATGGCTCTCTTCGACACTCATAACACATGGGCCTTTGTTTTCG 148
Query 173 GCTTGCTCGGAAACCTCATTTCCTTTGCTGTTTTCCTCTCTCCCGTGCCAACGTTCTATA 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 149 GCTTGCTCGGAAACCTCATTTCCTTTGCTGTTTTCCTCTCTCCCGTGCCAACGTTCTACA 208
Query 233 GGATTTGTAAGAAGAAAACCACAGAAGGATTTCAATCTATTCCCTATGTGGTGGCGCTCT 292
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 209 GGATTTGTAAGAAGAAAACCACAGAAGGATTTCAATCTATTCCCTACCTGGTGGCGCTAT 268
Query 293 TCAGCGCGATGCTTTGGCTCTACTACGCTACTCAGAAGAAAGATGTCTTCCTTCTCGTCA 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TCAGCGCGATGCTTTGGCTCTACTACGCTACTCAGAAGAAAGATGTCTTCCTTCTCGTCA 328
Query 353 CCATCAACAGCTTTGGTTGCTTCATTGAAACCATATACATCTCCATCTTTGTTGCCTTCG 412
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 329 CCATCAACAGCTTTGGTTGTTTCATTGAAACCATATACATCTCCATCTTCGTTGCCTTCG 388
Query 413 CATCCAAGAAAGCCCGAATGCTAACGGTGAAGCTCTTGTTGCTAATGAACTTTGGAGGGT 472
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 389 CATCCAAGAAAGCTCGAATGCTCACGGTGAAGCTGTTGTTGCTAATGAACTTTGGAGGAT 448
Query 473 TCTGTTTGATTCTCCTCCTCTGCCAATTCTTGGCAAAAGGAACCACACGTGCGAAGATCA 532
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 449 TCTGTTTGATTCTCCTCCTCTGCCAATTCTTGGCCAAAGGAACCACACGTGCCAAGATCA 508
Query 533 TTGGAGGTATCTGTGTCGGATTCTCTGTCTGCGTTTTTGCTGCGCCGCTTAGCATTATCA 592
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 509 TTGGAGGAATCTGTGTCGGATTCTCTGTCTGCGTTTTCGCTGCGCCGCTTAGCATTATCA 568
Query 593 GAACGGTGATAAAGACGAAAAGTGTGGAGTACATGCCGTTTAGCTTATCCTTGACTCTTA 652
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 569 GAACGGTGATAAAGACGAAAAGTGTTGAGTACATGCCGTTTAGCTTATCCTTGACTCTTA 628
Query 653 CCATCAGTGCGGTCATATGGCTCCTTTATGGTCTTGCTCTTAAGGATATCTATGTTGCCT 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 CCATCAGTGCGGTCATATGGCTCCTTTATGGTCTTGCTCTTAAGGATATCTATGTTGCCT 688
Query 713 TCCCAAACGTGATTGGGTTTGTTCTAGGTGCACTTCAAATGATACTCTATGTGGTTTACA 772
|||| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 689 TCCCTAACGTGATTGGGTTTGTTCTCGGTGCACTTCAAATGATACTTTACGTGGTTTACA 748
Query 773 AATACTGCAAAACGCCGTCGGATTTGGTTGAGAAAGAACTTGAGGCTGCGAAATTGCCAG 832
||||||||||||||||||||||||||||||| |||||||| || || ||||||||||| |
Sbjct 749 AATACTGCAAAACGCCGTCGGATTTGGTTGAAAAAGAACTCGAAGCCGCGAAATTGCCGG 808
Query 833 AAGTGAGCATCGATATGGTGAAGTTAGGTACACTCACATCTCCTGAACCAGTAGCGATCA 892
|||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||
Sbjct 809 AAGTGAGCATTGATATGCTGAAGTTAGGTACACTGACATCTCCTGAACCAGCAGCGATCA 868
Query 893 CCGTCGTCCGATCGGTGAACACATGTAACTGTAACGATCGAAATGCTGAGATTGAAAATG 952
| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 869 CAGTCGTCCGATCCGTGAACACGTGTAACTGTAACGATCGAAAGGCTGAGATTGAAAATG 928
Query 953 GTCAGGGAGTTAGAAACAGTGCTGCAACTACTTGAGTTTGCCCAAGAAACCCTAATAAGA 1012
||| |||||||||||||||||| | ||||||||||| |||| | | || |||||
Sbjct 929 GTCTGGGAGTTAGAAACAGTGCAACTGCTACTTGAGTTAGCCCT-GTAT---TATTAAGA 984
Query 1013 AACCTATTTGTTGACTATTTTGACTTTGTACCCTTCTTGATATACCTATCAATCACCATT 1072
|||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 985 AACCTATTTGTTGACTATTTTGACTTTGTACCCTTCTTGATATACCCACCCATCACCAGC 1044
Query 1073 GTCCACGTGTACT-AGTTTCGTTGTAGTAATTTTCAAAGTTTATCGAAGTATGCGTATTC 1131
|||||||||||| | ||||| | | ||||||||| |||||||| |||| |||| | ||
Sbjct 1045 ATCCACGTGTACTCA-TTTCGCTATCGTAATTTTCTGAGTTTATCAAAGTGTGCGAAGTC 1103
Query 1132 GAGGATTAATTAAATCGGGAATTACATTTTCCTGAGTTAAttttttctctttttcttttA 1191
||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1104 GAGGATTAATTAA-TCGGGAAATACATTTTCCTGAGTTAATTTTTTCTCTTCTTCTTTTA 1162
Query 1192 CTTATGGGACAATGTAATGAAACTATCTGTTGCATATAAATATTT-T------CCAAGTT 1244
|||| ||| |||||||| ||| ||||||||| |||||||||||| | |||||||
Sbjct 1163 ATTATTGGATAATGTAATTAAATTATCTGTTGGATATAAATATTTCTTATTTTCCAAGTT 1222
Query 1245 GAAAAGAAAATGAAAATTCTCAAGC 1269
|||||||| ||||| |||||||||
Sbjct 1223 GAAAAGAATTTGAAATTTCTCAAGC 1247
> Ahg485228 jgi|Araly1|485228|fgenesh2_kg.5__1220__AT3G48740.1
Length=1203
Score = 730 bits (395), Expect = 0.0
Identities = 698/841 (83%), Gaps = 33/841 (4%)
Strand=Plus/Plus
Query 128 TCATG-GCTCTCTTCGACACTCATAACACATGGGCCTTTGT-TTTCGGCTTGCTCGGAAA 185
||||| | ||||||| ||||| | ||||||||||||||||| ||| ||||||||||||||
Sbjct 98 TCATGAG-TCTCTTCAACACTGAAAACACATGGGCCTTTGTCTTT-GGCTTGCTCGGAAA 155
Query 186 CCTCATTTCCTTT-GCTGTTTTCCTCTCTCCCGTGCCAACGTTCTATAGGATTTGTAAGA 244
||||| | |||| || || ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 156 TCTCATCT-CTTTCGCCGTGTTCCTCTCTCCTGTGCCAACGTTCTATAGGATTTGGAAGA 214
Query 245 AGAAAACCACAGAAGGATTTCAATCTATTCCC-TATGTGGTGGCGCTCTTCAGCGCGATG 303
|||| || |||||||| |||||||||| |||| ||||| |||||||||||||| |||| |
Sbjct 215 AGAAGACAACAGAAGGGTTTCAATCTA-TCCCTTATGTTGTGGCGCTCTTCAGTGCGACG 273
Query 304 CTTTGGCTCTACTACGCTACTCAGAAGAAAGATGTCTTCCTTCTCGTCACCATCAACAG- 362
|||||||| ||||| || || |||||||||||||||||||| ||||| ||||| ||| |
Sbjct 274 CTTTGGCTTTACTATGCGACACAGAAGAAAGATGTCTTCCTCCTCGTAACCATTAAC-GC 332
Query 363 CTTTGGTTGCTTCATTGAAACCATATACATCTCCATCTTTGTTGCCTTCGCAT-CCAAGA 421
|||||| |||||||| |||||||| |||||| | || || |||||| ||| | |||||
Sbjct 333 CTTTGGATGCTTCATCGAAACCATCTACATCGCTATGTTCCTTGCCTACGC-TACCAAGC 391
Query 422 AAGCCCGAATGCTAACGGTGAAGCTC-TT-GTTGCTAATGAACTTTGGAGGGTTCTGTTT 479
|||||| ||| | || |||||| | || || || |||||||||||||| |||||| |
Sbjct 392 CAGCCCGGATGTTGACAGTGAAG-ACGTTACTT-CTTATGAACTTTGGAGGATTCTGTGT 449
Query 480 GATTCTCCTCCTCTGCCAATTCTTGGCAAAAGGAACCACACGTGCGAAGATCATTGGAGG 539
||||||||| || ||||||||||||| ||||||| |||||||||| ||||| || |||||
Sbjct 450 GATTCTCCTTCTTTGCCAATTCTTGGTAAAAGGAGCCACACGTGCTAAGATTATCGGAGG 509
Query 540 TATCTGTGTCGGATTCTCTGTCTGCGTTTTTGCTGCGCCGCTTAGCATTATCAGAACGGT 599
|||||||| ||||||||||| || ||||| ||||| || || ||||| ||||| |||||
Sbjct 510 AATCTGTGTTGGATTCTCTGTTTGTGTTTTCGCTGCTCCTCTAAGCATAATCAGGACGGT 569
Query 600 GATAAAGACGAA-AAGTGTGGAGTACATGCCGTTTAGCTTATCCTTGACTCTTACCATCA 658
|||||||| || ||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 570 AATAAAGAC-AAGGAGTGTGGAGTACATGCCCTTTAGCTTATCCTTAACCCTTACCATCA 628
Query 659 GTGCGGTCATATGGCTCCTTTATGGTCTTGCTCTTAAGGATATCTATGTTGCCTTCCCAA 718
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 629 GTGCTGTCATATGGCTCCTTTATGGTCTTGCTCTCAAGGACATCTATGTTGCCTTCCCGA 688
Query 719 ACGTGATTGGGTTTGTTCTAGGTGCACTTCAAATGATACTCTATGTGGTTTACAAATACT 778
| |||||||| |||| ||| |||||||| |||||||||||||| || || ||||||||||
Sbjct 689 ATGTGATTGGTTTTGCTCTCGGTGCACTCCAAATGATACTCTACGTTGTCTACAAATACT 748
Query 779 GCAAAACGCCGTCGGATTT-GGTTGAGAAAGAACTTGAGGCTGCGAAATTGCCAGAAGTG 837
| |||||| || || || | || ||||||||| | || ||||| || || || || |||
Sbjct 749 GTAAAACGTCGCCGCATCTAGGA-GAGAAAGAAGTCGAAGCTGCTAAGTTACCGGAGGTG 807
Query 838 AGCATCGATATGGTGAAGTTAGGTACACTCACATCTCCTGAACCAGTAGCGATCACCGTC 897
||| |||||||| ||||| | || ||| | |||| ||||| ||| | | ||| |||
Sbjct 808 AGCCTCGATATGCTGAAGCTGGGCACAGTTTCATCCCCTGAGCCAAT--C--TCA--GTC 861
Query 898 GTCCGATCG-GTGAACACA-TGTAACTGT---AACGATCGAAATGCTGAGATTGAAAATG 952
|| || || | ||||| | |||| ||| || ||||||| |||||||||||| |||
Sbjct 862 GTTCG-TCAAGCGAACA-AGTGTACCTGCGGCAATGATCGAAGGGCTGAGATTGAAGATG 919
Query 953 G 953
|
Sbjct 920 G 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5