BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23670.1
Length=2072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489227 jgi|Araly1|489227|fgenesh2_kg.6__2361__AT5G23670.1 2850 0.0
Ahg485232 jgi|Araly1|485232|fgenesh2_kg.5__1224__AT3G48780.1 1683 0.0
Ahg485233 jgi|Araly1|485233|fgenesh2_kg.5__1225__AT3G48790.1 477 1e-133
> Ahg489227 jgi|Araly1|489227|fgenesh2_kg.6__2361__AT5G23670.1
Length=1905
Score = 2850 bits (1543), Expect = 0.0
Identities = 1821/1947 (94%), Gaps = 51/1947 (3%)
Strand=Plus/Plus
Query 3 AAAAAAGAAAAG-AAATGGTTTTATGATCCGATCCCTTCTCAATCTCACGGAGGGGAAAA 61
|||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AAAAAA-TAAAGCAAATGGTTTTATGATCCGATTCCTTCTCAATCTCACGGAGGGGAAAA 59
Query 62 GATTCCTCCAATTCAAATCTCTGTCTGTGTCTCTGTCTCTCAACTTTCAATTTCTGAGAG 121
|| | ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 60 GA-T--TCCAATTCAAA------------TCTCTATCTCTCAACTTTCAATTTCTGAGAG 104
Query 122 AGTCGGAAATATTCTCCAGATCGCCTAAGGC-AAATTCGTTTTCCGATTCGGCCTAGCGA 180
||||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct 105 AGTCGGAAAAATTCTCCAGATCTCCT--CGCTAAATTCGTTTTCCGATTCGGCCTAGCGA 162
Query 181 CGGC----GAGAGA-G-GAGAGGAAGAGGCAAGTTGATTGACCGGAGAAGAAGACGAAGC 234
|||| |||||| | ||||||||||||||||||||||||||||||||| | | | |
Sbjct 163 CGGCGAGAGAGAGAGGAGAGAGGAAGAGGCAAGTTGATTGACCGGAGAAG-A-A-G-A-- 216
Query 235 CGTTCTTGGAGAAAATGATAACGATTCCTTATTTAACCGCTGTATCCACCTACTTCAGCT 294
| ||| |||||||||||||| |||||| ||||||||||||| |||||||||||||
Sbjct 217 ----C--GGAAAAAATGATAACGATCCCTTATCTAACCGCTGTATCGACCTACTTCAGCT 270
Query 295 ATGGATTGCTCTTTGCTTTTGGTCAGCTCCGAGATTTCTTCCGTCGCTTCATTGATTGGT 354
| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 271 ACGGATTGCTCTTTGCTTTTGGCCAGCTCCGTGATTTCTTCCGCCGCTTCATTGATTGGT 330
Query 355 GGTTCACTAGCAATCTCCAGGGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATA 414
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 331 GGCTCACTAGCAATCTCCAGGGATACGCGCCGATCTGTTTGGGGCATGAGGATTTTTATA 390
Query 415 TCAGGCGATTGTATCATCGGATTCAGGATTGTTTTGAACGACCTATATCGAGTGCACCTG 474
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 TTAGGCGATTGTATCATCGGATTCAGGATTGTTTTGAACGACCTATATCGAGTGCACCTG 450
Query 475 ATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAGCGAA 534
|||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 451 ATGCTTGGTTTGATGTCGTCGAGCGTTACTCTAATGATAACAACAAGACGCTTAAGCGAA 510
Query 535 CAACAAAAACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCTTGGGTTTGGTTCTT 594
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 CAACAAAGACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCTTGGGTTTGGTTCTT 570
Query 595 TTGATGAATATTGCACGCCTCGTGTTATTGAGTCCTTGAAGAAATTTTCAGCAAGTACAT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TTGATGAATATTGCACGCCTCGTGTTATTGAGTCCTTGAAGAAATTTTCAGCAAGTACAT 630
Query 655 GTAGCTCTCGTGTTGATGCAGGAACTACATCCGTGCATGCAGAACTTGAGGAATGTGTTA 714
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 631 GTAGCTCTCGTGTCGATGCAGGAACTACATCAGTGCATGCAGAACTTGAGGAATGTGTTA 690
Query 715 CTAGGTTTGTGGGAAAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAATTCGG 774
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 691 CTAGGTTTGTTGGAAAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAACTCAG 750
Query 775 CTATCATTCCAGTCTTGATTGGAAAGGGAGGGTTGATAATAAGTGATTCTTTGAACCATA 834
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 751 CTATCATTCCAGTCCTGATTGGAAAGGGAGGGTTGATAATAAGTGATTCCTTGAACCATA 810
Query 835 GTTCTATTGTCAATGGTGCTCGAGGTTCTGGAGCCACTATCCGTGTTTTCCAGCATAACA 894
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 811 GTTCGATTGTCAATGGTGCTCGAGGTTCAGGAGCCACTATCCGTGTTTTCCAGCATAACA 870
Query 895 CGCCTTCCCATTTGGAACGAGTTTTGAGAGAACAAATTGCAGAAGGTCAACCTAGGACAC 954
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 CACCTTCCCATTTGGAACGAGTTTTGAGAGAACAAATTGCAGAAGGTCAACCTAGGACAC 930
Query 955 ATCGACCATGGAAGAAAATTATTGTTGTTGTTGAAGGTATTTACAGCATGGAAGGGGAGA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 ATCGACCATGGAAGAAAATTATTGTTGTTGTTGAAGGTATTTACAGCATGGAAGGGGAGA 990
Query 1015 TTTGTCATCTACCGGAAGTTGTGGCCATATGCAAGAAGTATAAGGCATATGTTTATTTGG 1074
|||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 991 TTTGTCATCTGCCCGAAGTTGTCGCCATATGCAAGAAGTATAAGGCATATGTTTACTTGG 1050
Query 1075 ATGAAGCTCACAGCATTGGGGCAATTGGTAAAACAGGAAAGGGTATTTGTGAACTCCTGG 1134
|||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1051 ATGAGGCTCACAGCATTGGGGCAATTGGTGAAACAGGAAAGGGTATCTGTGAACTCCTGG 1110
Query 1135 GAGTTGACACAGCTGATGTGGACGTAATGATGGGAACCTTCACAAAATCTTTTGGGTCTT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GAGTTGACACAGCTGATGTGGACGTAATGATGGGAACCTTCACAAAATCTTTTGGGTCTT 1170
Query 1195 GTGGTGGCTATATTGCTGGATCTAAGGAGCTCATCCAATATTTGAAGCATCAATGCCCAG 1254
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1171 GTGGTGGCTATATTGCTGGATCTAAGGAGCTCATCCAATATTTGAAGCATCAATGCCCGG 1230
Query 1255 CTCATCTTTACGCAACATCCATACCAACTCCTTCCGCACAACAAATTATATCTGCCATTA 1314
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1231 CTCACCTTTACGCAACATCCATACCAACTCCTTCCGCACAACAAATCATTTCTGCCATTA 1290
Query 1315 AAGTTATTCTGGGAGAGGATGGTTCAAATCGAGGGGCACAAAAGCTAGCAAGAATACGTG 1374
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 1291 AAGTTATTCTGGGAGAGGATGGTTCAAACCGAGGAGCACAAAAGCTGGCAAGAATACGTG 1350
Query 1375 AGAACAGCAACTTTTTCCGGGCTGAGCTGCAGAAGATGGGATTTGAGGTACTTGGAGACA 1434
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1351 AGAACAGCAACTTTTTCCGGGCAGAGCTGCAGAAGATGGGATTTGAGGTACTTGGAGACA 1410
Query 1435 ATGATTCCCCAGTCATGCCTATAATGCTTTACAACCCAGCAAAAATCCCAGCTTTCTCAA 1494
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1411 ATGATTCCCCAGTCATGCCAATAATGCTATACAACCCAGCAAAAATCCCAGCTTTCTCAA 1470
Query 1495 GAGAATGTCTGCGACAAAAAGTGGCAGTGGTGGTCGTGGGTTTCCCAGCTACACCTCTAC 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1471 GAGAATGTCTGCGACAAAAAGTGGCAGTGGTGGTCGTGGGTTTCCCAGCTACACCTCTAC 1530
Query 1555 TGCTGGCTAGGGCACGTATTTGCATCTCCGCATCTCATTCAAGAGAAGATCTTATAAGAG 1614
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1531 TGCTGGCTAGGGCACGTATTTGCATTTCCGCATCTCATTCAAGAGAAGATCTTATAAGAG 1590
Query 1615 CCCTCAAGGTTATAAGCAAAGTAGGTGACCTTAGCGGAATCAAATATTTCCCGGCAGAGC 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 CCCTCAAGGTTATAAGCAAAGTAGGTGACCTTAGCGGAATCAAATATTTCCCGGCAGAGC 1650
Query 1675 CGAAGAAAATAGAACAGTCGAAAAACGACATCAAGCTGGATTGAAGAATTAACCAATGAA 1734
||| ||| ||||||||||| ||||| ||||||||| ||||||||||| | ||| ||||||
Sbjct 1651 CGAGGAAGATAGAACAGTCAAAAAATGACATCAAGTTGGATTGAAGACTAAACAAATGAA 1710
Query 1735 ATAGA-GATGCATCCAGGAAAACGCAAGCAAATGCTGTGTTATGTGTTAACTTCTCCATA 1793
||| | ||||||||||||||||||||||||||||| || ||| ||||||||||| | |
Sbjct 1711 ATAAAAGATGCATCCAGGAAAACGCAAGCAAATGCAGTTTTAAGTGTTAACTTCGGC-T- 1768
Query 1794 TCTCTCTGATGTGACACAAATCTGATTTCTCAGGGGTCCAGCCATTTCCTCTCTAAGTAA 1853
|| | | |||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct 1769 TCAC----A-----CACAAATCTGATTTCTCAGGAGTCAAGTCATTTCCTCTCTAAGTAA 1819
Query 1854 AACACAAACCCAGAGTTAGTCCACCTTTCCTCAAGTCTTGTTTACCATGGTGCTACTGCA 1913
| | ||| ||||||||||||||||||||||| |||||||| |||| ||| ||||||||||
Sbjct 1820 ATCCCAA-CCCAGAGTTAGTCCACCTTTCCTGAAGTCTTGCTTACGATGATGCTACTGCA 1878
Query 1914 TTTATGTGATTCTTCATCCATGTTTTT 1940
||||||||||||||| |||||||||||
Sbjct 1879 TTTATGTGATTCTTCTTCCATGTTTTT 1905
> Ahg485232 jgi|Araly1|485232|fgenesh2_kg.5__1224__AT3G48780.1
Length=1875
Score = 1683 bits (911), Expect = 0.0
Identities = 1297/1483 (87%), Gaps = 28/1483 (2%)
Strand=Plus/Plus
Query 248 AATGATAACGATTCCTTA-TTTAACCGCTGTATCCACCTACTTCAGCTATGGATTGCTCT 306
|||||| ||||| || || || ||||||||||| || || |||||||| || |||||||
Sbjct 156 AATGATTACGATCCCATACCTT-ACCGCTGTATCAACGTATTTCAGCTACGGTTTGCTCT 214
Query 307 TTGCTTTTGGTCAGCTCCGAGATTTCTTCCGTCGCT--TCATT-GATTGGTGGTTCACTA 363
| || ||||||||||| || |||| || ||| | || || || ||||||||| ||| |
Sbjct 215 TCGCCTTTGGTCAGCTTCGCGATTACTCCCG-C-CTAATC-TTCGATTGGTGGCGCACCA 271
Query 364 GCAATCTCCAGGGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATATCAGGCGAT 423
||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||
Sbjct 272 ACAATCTCCAGGGATACGCGCCGATCTGCTTGGCGCATGAGGATTTCTACATCAGACGAT 331
Query 424 TGTATCATCGGATTCAGGATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGT 483
||||||||||||||||||| ||||||| ||| || ||||| |||||||||||||| |||
Sbjct 332 TGTATCATCGGATTCAGGACTGTTTTGGACGTCCCATATCAAGTGCACCTGATGCCTGGA 391
Query 484 TTGATGTGGTTGAGCG-CTACTCTAATGACAACAACAAGACGCTTAAGCGAACAACAAAA 542
|||||||||||||| | | ||| | || |||||||||||||| |||||||| |||||
Sbjct 392 TTGATGTGGTTGAGAGAGT-TTCTGACGATAACAACAAGACGCTAAAGCGAACTACAAAG 450
Query 543 ACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCTTGGGTTTGGTTCTTTTGATGAA 602
||||| |||||||| ||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 451 ACTAGTAGGTGCCTTAATCTGGGGTCCTACAATTATCTTGGATTTGGTTCTTTTGATGAA 510
Query 603 TATTGCACGCCTCGTGTTATTGAGTCCTTGAAGAAATTTTCAGCAAGTACATGTAGCTCT 662
||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 511 TATTGTACGCCTCGTGTTATTGAGTCTTTGAAGAAATTTTCAGCTAGTACATGTAGCTCT 570
Query 663 CGTGTTGATGCAGGAACTACATCCGTGCATGCAGAACTTGAGGAATGTGTTACTAGGTTT 722
|| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| | |
Sbjct 571 CGCGTTGATGCAGGAACTACATCTGTGCATGCAGAACTTGAGGAATGTGTTGCTAAATAT 630
Query 723 GTGGGA-AAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAATTCGGCTATCAT 781
|| ||| || |||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 631 GTCGGACAA-CCTGCTGCTGTTGTCTTTGGCATGGGCTATGCAACAAACTCGGCTATTAT 689
Query 782 TCCAGTCTTGATTGGAAAGGGAGGGTTGATAATAAGTGATTCTTTGAACCATAGTTCTAT 841
||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 690 TCCCGTCTTGATTGGAAAGGGAGGGTTGATAATAAGCGATTCTTTGAACCATACTTCAAT 749
Query 842 TGTCAATGGTGCTCGAGGTTCTGGAGCCACTATCCGTGTTTTCCAGCATAACACGCCTTC 901
|||||| || ||||| ||||| ||||| ||||||||||||||||| || ||||| ||| |
Sbjct 750 TGTCAACGGCGCTCGTGGTTCAGGAGCTACTATCCGTGTTTTCCAACACAACACACCTGC 809
Query 902 CCATTTGGAACGAGTTTTGAGAGAACAAATTGCAGAAGGTCAACCTAGGACACATCGACC 961
||| ||||| ||| |||| ||||||||| || || || ||||| ||||| ||| ||||
Sbjct 810 TCATCTGGAAAAAGTATTGAAAGAACAAATCGCTGAGGGACAACCCAGGACGCATAGACC 869
Query 962 ATGGAAGAAAATTATTGTTGTTGTTGAAGGTATTTACAGCATGGAAGGGGAGATTTGTCA 1021
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 870 GTGGAAGAAAATTATTGTTGTTGTTGAGGGTATTTACAGCATGGAAGGGGAAATTTGTCA 929
Query 1022 TCTACCGGA-AGTTGTGGCCATATGCAAGAAGTATAAGGCATATGTTTATTTGGATGAAG 1080
||| || || | |||| | ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 930 TCTGCCCGAGA-TTGTCTCAATATGCAAGAAGTATAAGGCATATGTTTACTTGGACGAAG 988
Query 1081 CTCACAGCATTGGGGCAATTGGTAAAACAGGAAAGGGTATTTGTGAACTCCTGGGAGTTG 1140
||||||||||||| |||||||| || ||||||| |||| |||||||||||||||| ||||
Sbjct 989 CTCACAGCATTGGAGCAATTGGCAAGACAGGAAGGGGTGTTTGTGAACTCCTGGGGGTTG 1048
Query 1141 ACACAGCTGATGTGGACGTAATGATGGGAACCTTCACAAAATCTTTTGGGTCTTGTGGTG 1200
|||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1049 ACACTGCTGATGTGGACATAATGATGGGAACTTTCACGAAATCTTTTGGGTCTTGTGGTG 1108
Query 1201 GCTATATTGCTGGATCTAAGGAGCTCATCCAATATTTGAAGCATCAATGCCCAGCTCATC 1260
|||||||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||| |
Sbjct 1109 GCTATATTGCCGGATCAAAGGACCTCATCCAATATTTGAAGCACCAATGCCCGGCTCACC 1168
Query 1261 TTTACGCAACATCCATACCAACTCCTTCCGC-ACAACAAATTATATCTGCCATTAAAG-T 1318
|||||||||| || || ||||||||||||| ||| ||||| ||||| || || |||| |
Sbjct 1169 TTTACGCAACGTCAATTTCAACTCCTTCCGCGACA-CAAATCATATCGGCGAT-AAAGGT 1226
Query 1319 TATTCTGGGAGAGGATGGTTCAAATC-GAGGGGCACAAAAGCTAGCAAGAATACGTGAGA 1377
||| || |||||||| |||||||| | |||||||||||||| ||||||||||| | ||||
Sbjct 1227 TATCCTTGGAGAGGACGGTTCAAA-CAGAGGGGCACAAAAGTTAGCAAGAATAAGGGAGA 1285
Query 1378 ACAGCAACTTTTTCCGGGCTGAGCTGCAGAAGATGGGATTTGAGGTACTTGGAGACAATG 1437
|||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||||||
Sbjct 1286 ACAGCAACTTTTTCAGGGCTGAGTTGCAGAAGATGGGGTTTGAGGTTCTTGGAGACAATG 1345
Query 1438 ATTCCCCAGTCATGCCTATAATGCTTTACAACCCAGCAAAAATCCCAGCTTTCTCAAGAG 1497
|||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||| |
Sbjct 1346 ATTCCCCAGTCATGCCAATAATGCTTTACAATCCAGCAAAAATTCCAGCCTTCTCAAGGG 1405
Query 1498 AATGTCTGCGACAAAAAGTGGCAGTGGTGGTCGTGGGTTTCCCAGCTACACCTCTACTGC 1557
||||| ||||| |||| ||||||| |||||||| ||||||||||||||||| ||| |||
Sbjct 1406 AATGTTTGCGAGAAAACTTGGCAGTTGTGGTCGTCGGTTTCCCAGCTACACCGCTATTGC 1465
Query 1558 TGGCTAGGGCACGTATTTGCATCTCCGCATCTCATTCAAGAGAAGATCTTAT-AAGAGCC 1616
| || ||||| ||||||||||| ||||||||||| ||||||||||||||||| || ||||
Sbjct 1466 TAGCCAGGGCTCGTATTTGCATATCCGCATCTCACTCAAGAGAAGATCTTATTAA-AGCC 1524
Query 1617 CT-CAAGGTTATAAGCAAAGTAGGTGACCTTAGCGGAATCAAATATTTCCCGGCAGAGCC 1675
|| || |||||||||||||| ||||||||||| ||| ||||||||||| ||||| | ||
Sbjct 1525 CTACA-GGTTATAAGCAAAGCAGGTGACCTTACCGGGATCAAATATTTTCCGGCTGCTCC 1583
Query 1676 GAAGAAA-ATAGAAC-AGTCGAAAAACGACATCAAGCTGGATT 1716
||||| | |||| || |||||| | |||||| ||||||
Sbjct 1584 AAAGAAGCA-AGAAGTAGA-GAAAAATGGCATCAAATTGGATT 1624
> Ahg485233 jgi|Araly1|485233|fgenesh2_kg.5__1225__AT3G48790.1
Length=1026
Score = 477 bits (258), Expect = 1e-133
Identities = 376/433 (87%), Gaps = 8/433 (2%)
Strand=Plus/Plus
Query 914 AGTTTTGAGAGAACAAATTGCAGAAGGTCAACCTAGGACACATC-GACCATGGAAGAAAA 972
|||||||| ||||||||| || || || ||||| |||||||| | ||| ||||||||||
Sbjct 219 AGTTTTGAAAGAACAAATCGCTGAGGGACAACCAAGGACACA-CAGACTGTGGAAGAAAA 277
Query 973 TTATTGTTGTTGTTGAAGGTATTTACAGCATGGAAGGGGAGATTTGTCATCTACCGGA-A 1031
| || ||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
Sbjct 278 TCATCGTTGTTGTTGAAGGTATTTACAGCATGGAAGGGGAAATCTGTCATCTGCCGGAGA 337
Query 1032 GTTGTGGCCATATGCAAGAAGTATAAGGCATATGTTTATTTGGATGAAGCTCACAGCATT 1091
|||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 338 -TTGTCTCAATATGCAAGAAGTATAAGGCATATGTTTACTTGGATGAAGCTCACAGCATT 396
Query 1092 GGGGCAATTGGTAAAACAGGAA-AGGGTATTTGTGAACTCCTGGGAGTTGACACA-GCTG 1149
|| |||||||| || ||||||| ||| | |||||||||||||||| |||||||| | ||
Sbjct 397 GGAGCAATTGGCAAGACAGGAAGAGG-TGTTTGTGAACTCCTGGGGGTTGACACTTG-TG 454
Query 1150 ATGTGGACGTAATGATGGGAACCTTCACAAAATCTTTTGGGTCTTGTGGTGGCTATATTG 1209
|||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 455 ATGTGGACATAATGATGGGAACTTTCACGAAATCTTTCGGGTCTTGTGGTGGCTATATTG 514
Query 1210 CTGGATCTAAGGAGCTCATCCAATATTTGAAGCATCAATGCCCAGCTCATCTTTACGCAA 1269
| ||||| ||||| |||||||||||||||||| | || ||||| ||||| ||||||||||
Sbjct 515 CCGGATCCAAGGACCTCATCCAATATTTGAAGTACCATTGCCCTGCTCACCTTTACGCAA 574
Query 1270 CATCCATACCAACTCCTTCCGCACAACAAATTATATCTGCCATTAAAGTTATTCTGGGAG 1329
|||| || |||||||| | ||||||||| | ||||| | || |||||||| || ||||
Sbjct 575 CATCAATTTCAACTCCTGCTGCACAACAAGTCATATCGGTTATAAAAGTTATCCTTGGAG 634
Query 1330 AGGATGGTTCAAA 1342
|||||| ||||||
Sbjct 635 AGGATGCTTCAAA 647
Score = 156 bits (84), Expect = 7e-37
Identities = 111/124 (90%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 678 ACTACATCCGTGCATGCAGAACTTGAGGAATGTGTTACTAGGTTTGTGGGAAAGCCTGCT 737
|||||||| || |||| |||||| |||||||||||| ||| ||||||||| ||||||||
Sbjct 1 ACTACATCTGTCCATGAAGAACTCGAGGAATGTGTTGCTAAATTTGTGGGACAGCCTGCT 60
Query 738 GCTGTTGTTTTTGGCATGGGCTATGC-AACAAATTCGGCTATCATTCCAGTCTTGATTGG 796
||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||
Sbjct 61 GCTGTTGTTTTTGGCATGGGCTAC-CTAACAAACTCGGCTATCATTCCTGTCTTGATTGG 119
Query 797 AAAG 800
||||
Sbjct 120 AAAG 123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77932641270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5