BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23680.1
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941893 jgi|Araly1|941893|scaffold_602437.1 1352 0.0
Ahg485234 jgi|Araly1|485234|fgenesh2_kg.5__1226__AT3G48800.1 289 5e-77
> Ahg941893 jgi|Araly1|941893|scaffold_602437.1
Length=913
Score = 1352 bits (732), Expect = 0.0
Identities = 870/930 (94%), Gaps = 35/930 (4%)
Strand=Plus/Plus
Query 375 TCTCTCTCTCGTTTTCCATGGCCGAGTTACAGTTAGTAGAAGGTCACCAGATTAACGGCG 434
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TCTCTCTCTCGCTGACTATGGCCGAGTTACAGTTAGTAGAAGGTCACCAGATTAACGGCG 71
Query 435 GTTTTATCCCGCCGGCGATAATAAACTCAATCGAAGCACCGGAAACATCCGCCGCAGCCG 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GTTTTATCCCGCCGGCGATAATAAACTCAATCGAAGCACCGGAAACATCCGCCGCAGCCG 131
Query 495 GAGTTTCAGTCGGATCGAAACGATTGAGAAGACCTAGCGTTAGGTTAGGAGACATCGGCG 554
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 GCGTTTCAGTCGGATCGAAACGATTGAGAAGACCTAGCGTTAGGTTAGGAGACATCGGCG 191
Query 555 GTGACCAGTACCACCAACACGTGGTTGCGGCGTACGATTCTCCGCAAGTCCGACGGCCGA 614
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 192 GTGACCAGTACCACCAACAAGTGGTTGCGGCGTACGATTCTCCGCAAGTGCGAAGGCCGA 251
Query 615 AATGGAGACCTAgtggtggtggtggtggtggtggtggtAACAGGAAGGAGCCGAATAATC 674
|||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 252 AATGGAGACCTA---------GTGGTGGTGGTGGTGGTAACAGGAAGGACCCGAATAATC 302
Query 675 AGAGTGGGAAGACGACGTCGTCTTCGAGGACTCGAACTATGACGAATTTGAGCTCCGGTG 734
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 303 AGAGTGGGAAGACGACGTCTTCGTCGAGGACTCGAACTATGACGAATTTGAGCTCCGGTG 362
Query 735 GGTATGAGAATACTGGAACCCTAGATGAAGATCCGGTTTCGATTGGGAGTTGGCGGGTTA 794
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 363 GGTATGAGAATACTGGAACCCTAGATGAAGATCCGATTTCGATTGGGAGTTGGCGGGTTA 422
Query 795 AGAAATGGGTCAAATCATCCGGTGGAGAGACGGCGGCGACGACGACGACGAATACAGCT- 853
|||||||||||||||||||||||||| ||| | | | || | |||||||||||| |
Sbjct 423 AGAAATGGGTCAAATCATCCGGTGGACAGA---C-G-G-CG--G-CGACGAATACAG-TA 472
Query 854 TCGGCGAAGCGAGTTAGGTCGAATTGGGCGACGAGAAACGATGGTGTa-gagcaa-ggag 911
||||||||||||||| | |||||||||||||||||||||||||| | | ||| || ||
Sbjct 473 TCGGCGAAGCGAGTTCGATCGAATTGGGCGACGAGAAACGATGGAG-ATGAGAAATTCAG 531
Query 912 at-ga-gaaattcagtggagaggaagaagaagaggaagaggatgaagaattgggaggaga 969
| || || | || || || |||||||||||||||||||| |||||||| | |||||
Sbjct 532 -TGGAGGAGA---AGAGG-GA-GAAGAAGAAGAGGAAGAGGAAGAAGAATT--G-GGAGA 582
Query 970 agaaggGTTTAGGGATTTCAGCAGAGAAGATTCGGAGAGTCCGATGAAAGAACGAAGACG 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 AGAAGGGTTTAGGGATTTCAGCAGAGAAGATTCGGAGAGTCCGATGAAAGAACGAAGACG 642
Query 1030 GTACGAGAATAGAGAGGTTGAATTGTTAGGAGATTGGCAAAGTGGAGGAAGAGGAAAAGA 1089
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 643 GTACGAGAATAGAGAGGTTGAATTGTTAGGAGATTGGCAGAGTGGAGGAAGAGGAAAAGA 702
Query 1090 AGGAGTGAAGATATGGTTACAAGAGTTAGGGTTAGGGAGATATTGGCCAATGTTTGAGAT 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 AGGAGTGAAGATATGGTTACAAGAGTTAGGGTTAGGGAGATATTGGCCAATGTTTGAGAT 762
Query 1150 GCATGAAGTTGATGAACAAGTGTTACCATTGTTGACATTGGAGGATCTTAAAGATATGGG 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GCATGAAGTTGATGAACAAGTGTTACCATTGTTGACATTGGAGGATCTTAAAGATATGGG 822
Query 1210 GATTAATGCTGTTGGGTCTAGGAGGAAGATGTATTGTGCAATTCAGAAGCTTGGGAGGGA 1269
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 823 GATTAATGCTGTTGGGTCTAGGAGGAAGATGTATTGTGCAATTCAAAAGCTTGGAAGGGA 882
Query 1270 GTTCTCGTGAAAAATGGTGGAAGAGTTTTG 1299
||||||||||||| ||||||||||||||||
Sbjct 883 GTTCTCGTGAAAA-TGGTGGAAGAGTTTTG 911
> Ahg485234 jgi|Araly1|485234|fgenesh2_kg.5__1226__AT3G48800.1
Length=842
Score = 289 bits (156), Expect = 5e-77
Identities = 189/205 (92%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 1072 TGGA-GGAAGAGGAAAAGAAGGAGTGAAGATATGGTTACAAGAGTTAGGGTTAGGGAGAT 1130
|||| ||| |||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 635 TGGATGGAGGAGGAAGAGAAGGTGTGAAGATATGGTTACAAGAGTTAGGGTTAGGGAGAT 694
Query 1131 ATTGGCCAATGTTTGAGATGCATGAAGTTGATGAACAAGTGTTACCATTGTTGACATTGG 1190
||||||| ||||||||||| ||||| ||||||||| | || || ||||||||||||||||
Sbjct 695 ATTGGCCTATGTTTGAGATACATGAGGTTGATGAAGAGGTTTTGCCATTGTTGACATTGG 754
Query 1191 AGGATCTTAAAGATATGGGGATTAATGCTGTTGGGTCTAGGAGGAAGATGTATTGTGCAA 1250
| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
Sbjct 755 AAGATCTTAAAGATATGGGGATTAATGCTGTTGGGTCGAGGAGGAAGATGTTTTGTGCTA 814
Query 1251 TTCAGAAGCTTGGGAGGGAGTTCTC 1275
||||||||||||| |||||||||||
Sbjct 815 TTCAGAAGCTTGGTAGGGAGTTCTC 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56068840640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5