BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23690.1
Length=1789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489230 jgi|Araly1|489230|fgenesh2_kg.6__2364__AT5G23690.1 2630 0.0
Ahg897736 jgi|Araly1|897736|Al_scaffold_0005_1702 1175 0.0
> Ahg489230 jgi|Araly1|489230|fgenesh2_kg.6__2364__AT5G23690.1
Length=1745
Score = 2630 bits (1424), Expect = 0.0
Identities = 1646/1750 (94%), Gaps = 27/1750 (2%)
Strand=Plus/Plus
Query 37 CTTCTCTGCAAGTCTCTCTGTTCTAGTCACAATTCACTGAATTAAAGTTTGAAAACCCAT 96
||||||||||| ||||||||||||| |||||||||| |||| |||| |||||||||||||
Sbjct 1 CTTCTCTGCAACTCTCTCTGTTCTACTCACAATTCAGTGAAGTAAAATTTGAAAACCCAT 60
Query 97 GATGAAATGTTGAACCTTTCCAATTTCCATGGCGATTTCAAGTGTGGGTTTTGCTTGCAG 156
||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 61 GATGAAATGTTGAACCTTTTCAATTTCAATGGCGATTTCAAGTGTGGGTTTCGCTTGTAG 120
Query 157 ATCCT-TTTCCCCTGTTCGTACTCTCCAGTCTCACTGCTTATGGAA---G-A-----TAC 206
||||| ||| |||||||||||||||||||||||||||||||||||| | | |||
Sbjct 121 ATCCTATTT-CCCTGTTCGTACTCTCCAGTCTCACTGCTTATGGAAGGTGAACTCTTTAC 179
Query 207 GGTTCAACACTGTTGCTGCTGCAATTGAGACAATGGATGAGTCAGA-TGGTT-TT-GCCA 263
|||||||||||||||||||||||||||||||||| ||||| ||||| || || || |||
Sbjct 180 GGTTCAACACTGTTGCTGCTGCAATTGAGACAATAGATGACTCAGATTGTTTCTTCACCA 239
Query 264 CGGACAGTGATCGTCAAGACAAGGTTTCTGAT-GAACCAAGGGATCGTGAGTGGAAACAA 322
|||||||||| |||||||||||||| || || | | || |||||||||||||||| | |
Sbjct 240 AGGACAGTGATAGTCAAGACAAGGTTGCTAATGGGA-CACGGGATCGTGAGTGGAAGCGA 298
Query 323 CTGAATTCGAAAGATCTTGGACTAAGCAGCTCAATGATTGCAAAATCCACAAGAAAAGTG 382
|||||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 299 CTGAATTCAAAAGACCTTGGAATAAGCAGCTCAATGATTGCAAAATCCACGAGAAAAGTG 358
Query 383 CTTAATGGCCTTAAAAGCAAAGGACATGATGTTTACCTTGTGGGAGGCTGTGTACGAGAT 442
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 359 CTTAATGGCCTTAAAAGCAAAGGACATGATGTTTACCTTGTGGGAGGCTGTGTACGGGAT 418
Query 443 CTTATTCTGAAGCGGACACCGAAAGACTTCGATATACTTACCTCTGCAGAACTTAGAGAG 502
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 419 CTTATTCTGAAGCGGACACCGAAAGACTTCGATATACTCACCTCTGCAGAACTTAGAGAG 478
Query 503 GTGGTTCGAACTTTCCCAAGATGTGAAATTGTTGGAAGAAGGTTTCCTATATGTCACGTA 562
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTTGTTCGAACTTTCCCAAGATGTGAAATTGTTGGAAGAAGGTTTCCTATATGTCACGTA 538
Query 563 CACATTGGAGATGATTTAATAGAGGTTTCGAGTTTTAGTACCTCTGCACAGAATTCTT-C 621
|||||||||||||||||| ||||||| || ||||||||||||||||||||||||| || |
Sbjct 539 CACATTGGAGATGATTTAGTAGAGGTCTCAAGTTTTAGTACCTCTGCACAGAATT-TTCC 597
Query 622 GAGAAATACGAGAACTGAATGCAAAGAATCGAGTGGCTCAGATGGTGATGAGGACTGTAT 681
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 598 GAGAAATACGAGAACTGAATCCAAAGAATCGAGTGGCTCAGATGGTGATGAGGACTGTAT 657
Query 682 CCGTTTGAATAACTGTTTGCAGCGTGATTTCACAATTAACGGGTTGATGTTTGATCCATA 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CCGTTTGAATAACTGTTTGCAGCGTGATTTCACAATTAACGGGTTGATGTTTGATCCATA 717
Query 742 TGCCAAAGTCGTATATGACTATTTGGGAGGAATGGAAGATATTAGAAAAGCTAAAGTTCG 801
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 718 TGGTAAAGTCGTATATGACTATCTGGGAGGAATGGAAGATATTAGAAAAGCTAAAGTTCG 777
Query 802 AACAGTGATTCACGCTGGCACATCTTTTCACCAGGACTGTGCTCGGATTCTTCGTGCAAT 861
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 778 AACAGTGATTCACGCTGGCACATCTTTTCAACAGGACTGTGCTCGGATTCTTCGTGCAAT 837
Query 862 AAGAATTGCTGCGCGTTTAGGTTTCAGAATGTCCAAAGAAACCGCTCATTTTATTAAGAA 921
| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 838 ACGAATTGCTGCGCGTTTAGGTTTCAGAATGTCCAAGGAAACAGCTCATTTTATTAAGAA 897
Query 922 CCTTTCCTTACTAGTACAAAGACTTGACAAGGGAAGGATCTTGATGGAAATGAATTACAT 981
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 898 CCTTTCTTTACTAGTACAAAGACTTGACAAGGGAAGGATCTTGATGGAAATGAATTATAT 957
Query 982 GTTAGCTTATGGATCAGCAGAGGCTTCTTTGAGATTGCTGTGGAAATTTGGGATACTTGA 1041
||||||||||||||||||||| |||||||||||| |||| |||||||||||| |||| ||
Sbjct 958 GTTAGCTTATGGATCAGCAGAAGCTTCTTTGAGACTGCTTTGGAAATTTGGGTTACTAGA 1017
Query 1042 AATTCTTCTACCAATTCAGGCAGCATATCTTGCACGCAGTGGTTTCAGGAGACGTGACAA 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AATTCTTCTACCAATTCAGGCAGCATATCTTGCACGCAGTGGTTTCAGGAGACGTGACAA 1077
Query 1102 AAGGACTAACATGCTTCTGTCTCTCTTT-GCTAACTTGGATAAATTGTTAGCACCTGATA 1160
|||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||
Sbjct 1078 AAGGACTAACATGCTTCTGTCTCT-TTTCGCTAATTTGGATAAATTGTTAGCACCTGATA 1136
Query 1161 GGCCTTGTCACAGCAGCTTATGGATAGCAATCTTGGCGTTTCACAAAGCACTTGCTGATA 1220
| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1137 GACCTTGTCACAGCAGCTTATGGATAGCAATCTTGGCATTTCACAAAGCGCTTGCTGATC 1196
Query 1221 AACCTCGAAGTCCTATAGTGGTTGCTGCGTTTAGCCTTGCTGTTCACAACTGTGGAGATA 1280
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AACCTCGAAGTCCTGTAGTGGTTGCTGCGTTTAGCCTTGCTGTTCACAACTGTGGAGATA 1256
Query 1281 TTCTAGAAGCTGTGGAAATCACAAAGAAGATCACTAGGCCACACGATAAAAGCTTCTTCG 1340
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TTCTAGAAGCTGTGAAAATCACAAAGAAGATCACTAGGCCACACGATAAAAGCTTCTTCG 1316
Query 1341 AGCTAGTAGAGCCCGAGGAGAATCTCGACTTCCAAACCCTGTTGGACGAGGTCATGGATC 1400
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1317 AGCTAGTAGAGCCCGAGGAGAATCTAGACTTCCAAACCCTTTTGGACGAGGTCATGGATC 1376
Query 1401 TTGATGCTTCTATCGAAGATGCCTTAAACCAGATGACTGATGCGTATTTTATATCGAAAG 1460
||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1377 TTGATGCATCTATCAAAGATGCCTTAAACCAGATGACTGATGGGTATTATATATCGAAAG 1436
Query 1461 CTATGTCAGCTTACCCTCAAGCACCATATTCCGATTTGGTCTTTATACCGTTGCAGCTGT 1520
||||||||||||||||||||||||| |||||||||||||| ||||||||| |||| |||
Sbjct 1437 CTATGTCAGCTTACCCTCAAGCACCGTATTCCGATTTGGTATTTATACCGCTGCAATTGT 1496
Query 1521 ACCTTAGAGCAGGCAGAATCTTCGATTGTGTGAAAAACGAAGAGACACG-A-AT---TGG 1575
|||||||||||||||| || ||||||||||||||||| || ||||||| | | |||
Sbjct 1497 ACCTTAGAGCAGGCAGGATATTCGATTGTGTGAAAAAAGACGAGACACACACACAAATGG 1556
Query 1576 -ATTTGAGGCCAAGCAAGGAAGCAAGATCGAGTATGGTTCGTTAAATTCAGGATATTTTC 1634
||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1557 GATTTGAGGCGAAGCAAGGAAGCAAGATCGAGTATGGTTCGTTATATTCAGGAGATTTTC 1616
Query 1635 CCGAAATTCGGCATGTATTTGCGAGGGTTGTGTTCGATACTGTTTTTCCATTAAACCTAT 1694
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1617 CGGAAATTCGGCATGTATTTGCGAGGGTTGTGTTCGATACTGTTTTTCCGTTAAACCTAT 1676
Query 1695 CTCAAGAATTGTAAAAATCTCATCTTTGAGCCCTTTCAAAGCTTGGGACACTAGGTGGGG 1754
|||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 1677 CTCAAGAATTGTAAAAATCTCATCTTTGAGTCCTT-CAAAGCTTGGGACACAAGGTGGGG 1735
Query 1755 AAAGTATCCA 1764
||||||||||
Sbjct 1736 AAAGTATCCA 1745
> Ahg897736 jgi|Araly1|897736|Al_scaffold_0005_1702
Length=1833
Score = 1175 bits (636), Expect = 0.0
Identities = 1200/1462 (82%), Gaps = 80/1462 (5%)
Strand=Plus/Plus
Query 125 ATGGCGATTTCAAGTGTGGG-TT-TT-GCTTGCAGAT-CC-TTTTCCCCTGTTCGTACTC 179
|||||| ||| |||| |||| || || ||||||||| || |||| ||||||| | ||
Sbjct 1 ATGGCGGTTTTAAGTCTGGGTTTCTTCTCTTGCAGATCCCATTTT--CCTGTTC-T--TC 55
Query 180 TCCAGTCTCACTGCTTATGGAAGATACGGTTCAACACTGTTGCTGCTGCAATTGAGACAA 239
|| || | |||| || | ||| | | ||||||||||||||||||||||||||||||
Sbjct 56 CCCTGTTTTACTGTTTCTCCAAGGTTCAGTTCAACACTGTTGCTGCTGCAATTGAGAC-- 113
Query 240 TGGATGAGTCAGATGGTTTTGCCACGGACAGTGATCGTCAAGACAAGGTTTCTGAT--GA 297
| | | | || || || ||||||||||| || || |||| ||||||| ||
Sbjct 114 T-G-T--G---GA------TGACAAGGACAGTGATCATCTTGAGAAGGGTTCTGATAGGA 160
Query 298 --ACCAAGGGATCGTGAGTGGAA-ACAACTGAATTCGAAAGATCTT-GGACTAAGC-AGC 352
| || | | | |||||||| | || ||||||| ||||| ||| ||| ||| | ||
Sbjct 161 CGAGTAAAGCA-CCAGAGTGGAAGA-AATTGAATTCAAAAGACCTTGGGA-TAA-CTAGT 216
Query 353 TCAATGATTGCAAAATCCACAAGAAAAGTGCTTAATGGCCTTAAAAGCAAAGGACATGAT 412
|| |||||| |||| ||||| || |||||| ||||||||||| || |||||| |||||
Sbjct 217 TCTATGATTTCAAAGCCCACACGACTAGTGCTAAATGGCCTTAAGAGTAAAGGATATGAT 276
Query 413 GTTTACCTTGTGGGAGGCTGTGTACGAGATCTTATTCTGAAGCGGACACCGAAAGACTTC 472
||||| |||||||||||||||||||| ||||||||| |||||||||| || |||||||||
Sbjct 277 GTTTATCTTGTGGGAGGCTGTGTACGGGATCTTATTTTGAAGCGGACGCCAAAAGACTTC 336
Query 473 GATATACTTACCTCTGCAGAACTTAGAGAGGTGGTTCGAACTTTCCCAAGATGTGAAATT 532
|||||||| || ||||| |||||||||||||| ||||| |||||| ||||||||||||||
Sbjct 337 GATATACTCACTTCTGCGGAACTTAGAGAGGTTGTTCGGACTTTCTCAAGATGTGAAATT 396
Query 533 GTTGGAAGAAGGTTTCCTATATGTCACGTACACATT-GGAGATGATTTAATAGAGGTTTC 591
||||||| |||||||||||||||||| || ||| || ||| |||| | |||||||||||
Sbjct 397 GTTGGAAAAAGGTTTCCTATATGTCATGTGCACGTTGGGA-ATGAGATGATAGAGGTTTC 455
Query 592 GAGTTTTAGTACCTCTGCACAGAATTCTTCGAGAAATACGAGAACTGAATGC--AAAGAA 649
||||||||| ||||||||||| |||||| | ||||| | |||||| | | | || ||
Sbjct 456 GAGTTTTAGCACCTCTGCACAAAATTCTCCAAGAAACATGAGAAC-GGGTTCTGGAA-AA 513
Query 650 TCGAGTGGCTCAGATGGTGATGAGGACTGTATCCGTTTGAATAACTGTTTGCAGCGTGAT 709
|| | |||||| | ||| |||||| | |||||| |||||||| ||||||||||||
Sbjct 514 TCCAATGGCTC--CT-ATGACGAGGACAACACCCGTTTCAATAACTGCTTGCAGCGTGAT 570
Query 710 TTCACAATTAACGGGTTGATGTTTGATCCATATGCCAAAGTCGTATATGACTAT-TTGGG 768
||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct 571 TTCACAATTAATGGGTTGATGTTTGATCCATATGCCGAAGTTGTATATGACTATCTTGGG 630
Query 769 AGGAATGGAAGATATTAGAAAAGCTAAAG-TTCGAACAGTGATTCACGCTGGCACATCTT 827
||||| ||||| |||| ||||||| ||| | || |||||| |||| |||||||||||||
Sbjct 631 -GGAATAGAAGACATTAAAAAAGCT-AAGATACGGACAGTGTTTCATGCTGGCACATCTT 688
Query 828 TTCACCAGGACTGTGCTC-GGATTCTTCGTGCAATAAGAATTGCTGCGCGTTTAGGTTTC 886
|||| |||||||||| | |||||||||||| | ||||||||||||||||||||||||
Sbjct 689 TTCAAGAGGACTGTGC-CAGGATTCTTCGTGGGACAAGAATTGCTGCGCGTTTAGGTTTT 747
Query 887 AGAATGTCCAAAGAAACCGCTCATTTTATT-AAGAACCTTTCCTTAC-TAGTACAAAGAC 944
| ||| ||||| ||||| ||||| ||| || |||||||||||||| | |||||||||| |
Sbjct 748 ACAATCTCCAAGGAAACAGCTCA-TTTCTTAAAGAACCTTTCCTT-CTTAGTACAAAGGC 805
Query 945 TTGACAAGGGAAGGATCTTGATGGAAATGAATTACATGTTAGCTTATGGATCAGCAGAGG 1004
| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 806 TCCACAGGGGAAGAATCTTGATGGAAATGAATTACATGTTAGCGTATGGATCAGCAGAAG 865
Query 1005 CTTCTTTGA-GATTGCTGTGGAAATTTGGGATACTTGAAATTCTTCTACCAATTCAGGCA 1063
||||||| | ||||| ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 866 CTTCTTT-ACGATTGTTGTGGAAATTTGGGATACTAGAAATTCTTTTACCAATTCAGGCA 924
Query 1064 GCATATCTTGCACGCAGTGGTTTCAGGAGACGTGACAAAAGGACTAACATGCTTCTGTCT 1123
|||||||| | | || ||| |||| |||||| |||||||||| |||| |||||||||||
Sbjct 925 GCATATCTCGTTCACACTGGGTTCAAGAGACGCGACAAAAGGAGTAACTTGCTTCTGTCT 984
Query 1124 CTCTTTGCTAACTTGGATAAATTGTTAGCACCTGATAGGCCTTGTCACAGCAGCTTATGG 1183
||||||| || |||||||||||||| || |||||||| ||||| ||||||||||| |||
Sbjct 985 CTCTTTGGAAATTTGGATAAATTGTTGGCTCCTGATAGACCTTGCCACAGCAGCTTGTGG 1044
Query 1184 ATAGCAATCTTGGCGT-TTCACAAAGCACTTGCTGATAAACCTCGA-AGTCCTAT-AGTG 1240
|| |||||||||| | |||||||||||||||||||| |||||||| | |||| | ||||
Sbjct 1045 CTAACAATCTTGGC-TCTTCACAAAGCACTTGCTGATCAACCTCGATA-TCCT-TCAGTG 1101
Query 1241 GTTGCTGCGTTTAGCCTTGCTGTTCACAACTG-TGGAGATATTCTAGAAGCTGTGGAAAT 1299
|| || ||||||||||||||||| ||||| || ||||||| ||||||||||||| ||||
Sbjct 1102 GTAGCCGCGTTTAGCCTTGCTGTCCACAA-TGGTGGAGATGTTCTAGAAGCTGTAAAAAT 1160
Query 1300 CACAAAGAA-GATCACTAGGCCACACGATAAAAGCTTCTTCGAGCTAGTAGAGCCCGAGG 1358
||| | ||| | |||| | |||||| ||| ||||||||| |||||| | ||||| ||||
Sbjct 1161 CACCAGGAAAG-TCACAAAGCCACATAATAGAAGCTTCTTTGAGCTACTGGAGCCAGAGG 1219
Query 1359 AGAATCTCGACTTCCAAACCCTGTTGGACGAGGTCATGGATCTTGATGCTTCTATCGAAG 1418
| | || |||| ||||||| ||||||| || || |||||| ||||| | |||||| |||
Sbjct 1220 A-A--CTGGACTCCCAAACCTTGTTGGATGAAGTTATGGATTTTGATTCATCTATCAAAG 1276
Query 1419 ATGCCTTAA-ACCAGATGACTGATGCGT-ATTTTATATCGAAAGCTATGTCAGCTTACCC 1476
| ||||| || |||||||||||| | |||| || || || |||||| |||| |||||
Sbjct 1277 AAGCCTTGGGAC-AGATGACTGATGGGAGATTT-ATTTCTAAGGCTATGGCAGCGTACCC 1334
Query 1477 TCAAGCACCATATTCCGATTTGGTCTTT-ATACCGTTGCAGCTGTACCTTAGA-GCAGG- 1533
||| || |||||||| ||| |||| ||| ||||||||||| |||| || ||| ||| |
Sbjct 1335 TCAGGCCCCATATTCTGATATGGT-TTTCATACCGTTGCAATTGTATCT-AGATGCAAGA 1392
Query 1534 CAGAATCTTCGATTGTGTGAAA 1555
| | || ||||| |||||||||
Sbjct 1393 C-GTATATTCGAGTGTGTGAAA 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67153101935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5