BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23700.1
Length=1785
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489231 jgi|Araly1|489231|fgenesh2_kg.6__2365__AT5G23700.1 1814 0.0
Ahg485239 jgi|Araly1|485239|fgenesh2_kg.5__1231__AT3G48860.2 802 0.0
> Ahg489231 jgi|Araly1|489231|fgenesh2_kg.6__2365__AT5G23700.1
Length=1674
Score = 1814 bits (982), Expect = 0.0
Identities = 1198/1300 (92%), Gaps = 24/1300 (2%)
Strand=Plus/Plus
Query 85 AGCCCAGTGTACGGTCGTCAATGGAGCAGATCATCCAACGGTACGGAATCTAGATCGCCG 144
||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||
Sbjct 22 AGCCCAGTGTACGGTCGTCAATGGAGCAGATCATCTAACGTTACGGAATCGAGATCGCCG 81
Query 145 TCGATGTCTCCAGCTCACCGGAATCAAATCGGTGGTGTTGGTGGCTTATCAACCGTTAAA 204
|| | ||| || ||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 82 TCCAAGTCACCTGCTCACCGGAATCAAATCGGTAGTGTTGGTGGCTTATCCACCGTTAAA 141
Query 205 AGAACTCAAAACGTAGCCACCAAAGCGGCGGCTCAACGGTTAGCGAAGGTTATGGCTTTA 264
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CGGACTCAGAACGTAGCCACCAAAGCGGCGGCTCAACGGTTAGCGAAGGTTATGGCTTTA 201
Query 265 CAGAACAAAGACAATGAAGAAGACGATGATGA---CGACGATCACGAATTCAAATTCGCA 321
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 202 CAGAACAAAGACAATGAAGAAGACGATGATGATGACGACGATCACGAATTCAAATTCGCA 261
Query 322 CCTCCTTCTTCTGGACCTATCAACGGTTCCTTCGCTCGCCGTAATCGATCGCATTCACCT 381
||||||||||||||| ||||||||||||||||| ||||||| || |||||||| ||||||
Sbjct 262 CCTCCTTCTTCTGGAGCTATCAACGGTTCCTTCTCTCGCCGCAACCGATCGCAGTCACCT 321
Query 382 GCGATAGGTAGGAACATCACTGAGCAAGTGACTTCAGTGCGTTCGTCGTCGACAGGAAGG 441
||||||||||| || | ||||||||||||||||||||||||||| ||||| || |||||
Sbjct 322 GCGATAGGTAG-AA-A-CACTGAGCAAGTGACTTCAGTGCGTTCTTCGTCTACTGGAAGA 378
Query 442 CCATCAACGTTTAGTAGATCATCAACTCCGAATGCGTCTCCCCTTTGGATGCCACCTAAG 501
|||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||
Sbjct 379 CCATCAACGTTTAGTAGATCCGCAACTCCGAATGCGTCTCCGATTTGGATGCCGCCTAAG 438
Query 502 GCATCGTTGAAACCTCCGGTGATTATTCCTCCAATTGATCATTCATTTAAGGATAGAGAT 561
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 439 GCGTCGTTGAAACCTCCGGTGATTATTCCTCCAATTGATCAGTCATTTAAGGATAGAGAT 498
Query 562 CAAAGATACTTTGGTGATGTACCACGCTTAGTAAATTCGAGAGATAAGGGGTATCAGCGA 621
||||| || |||||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct 499 CAAAGGTATTTTGGTGATGTACC--G-TTAGTAAATTCGAGAGATAAAGGGTATCAGCGC 555
Query 622 GAAGCTTCAGCTCTTCGTGATGAAGTGGATATGCTACAAGAGGAGAATGAGATTGTATTG 681
|||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 556 GAAGCTGCAGCTCTTCGTGATGAAGTCGATATGCTGCAAGAGGAGAATGAGATTGTATTG 615
Query 682 GAGAAGCTTCACCGTGCAGAAGAAATGCGTGAGGCAGCAGAAGCCAGGGCTCGAGAGCTG 741
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 616 GAGAAGCTTCACCGTGCAGAAGAAAACCGCGAGGCAGCAGAAGCCAGGGCTCGAGAGCTG 675
Query 742 GAGAAACAGGTTGCTTCTCTTGGAGAAGGAGTGTCTCTGGAGGCTAAATTGTTAAGTAGA 801
|||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||||
Sbjct 676 GAGAAACAGGTTGCTTCTCTTGGAGAAGGAGTTTCTTTGGAAGCCAAATTGTTAAGTAGG 735
Query 802 AAGGAAGCGGCATTGCGCCAACGTGAGGCTGCTCTTAAGGCTGCTAACGAGAAAAAAGAT 861
|||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 736 AAGGAAGCTGCATTGCGCCAAAGGGAGGCTGCTCTTAAGGCTGCTAACGAGAAAAAAGAT 795
Query 862 GGGAAAAAGGAGGAAGTTGTTTCCCTCCGTTCAGAAATTCAGATCTTGAAGGATGAGGCA 921
|| ||||||||||||||||||||||| |||||| || |||||| | |||||||||||||
Sbjct 796 GGCAAAAAGGAGGAAGTTGTTTCCCTTCGTTCACAACTTCAGAGCATGAAGGATGAGGCT 855
Query 922 GAAACAGCTGCGGAAT-GCCTTCAAGAAGCGGAATCAGAAGCAAAGGCTCTTCGTATAAT 980
| ||||||||||||| || |||||||||| ||| ||||||||||||||||||||| |||
Sbjct 856 GCAACAGCTGCGGAACAGC-TTCAAGAAGCAGAAGCAGAAGCAAAGGCTCTTCGTACAAT 914
Query 981 GACTCAAAGAATGGTTTTAACACAGGACGAAATGGAGGAAGTAGCCTTGAAGAGATGCTG 1040
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 915 GACTCAAAGAATGGTTTTAACACATGACGAAATGGAGGAAGTAGCCTTGAAGAGATGCTG 974
Query 1041 GCTTGCCCGGTATTGGGGTTTGGCAGTGCAGCATGGCATTTGTGCTGACATAGCACCATC 1100
||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| ||||
Sbjct 975 GCTTGCCCGGTATTGGGGTTTGGCAGTACAGCATGGGATTTGTTCTGACATAGCATCATC 1034
Query 1101 CAGGCATGAAAAATGGTCGGCTCTGGCTCCTCTTCCATTTGAGCTGGTCATATCTGCAGC 1160
||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1035 AAGGCATGAAAAGTGGTCTGCTTTGGCTCCTCTTCCATTTGAGCTGGTCATATCTGCAGC 1094
Query 1161 ACAAAAGACCAAGGATGATCAGAGCAAAACTGCTAGATTTTTAAGTGATCTACCTGGAGA 1220
||||||| ||||||| || | || ||| ||||||||||||||||||| |||||||
Sbjct 1095 ACAAAAGGCCAAGGA----CA-A--AA--CTGATAGATTTTTAAGTGATCTAACTGGAGA 1145
Query 1221 AGGAAATATCGAAAGTATGCTTTCAGTTGAGATGGGTTTGAGAGAGCTGGCATCCTTAAA 1280
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1146 AGGAAATATTGAAAGTATGCTTTCAGTTGAGATGGGTTTGAGAGAGCTAGCATCCTTAAA 1205
Query 1281 GGTTGAGGATGCTGTTATGCTTGCATTCGCACAGAAGAGAACACCGAGTTTGGTTCGTCA 1340
|||||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1206 GGTTGAAGATGCGGTTATGCTTGCATTCGCCCAGAAGAGAACACCAAGTTTAGTTCGTCA 1265
Query 1341 AG--AT-T-CCAAAGGGCATGGAGAACTCAGTTTTGTAGA 1376
|| || | |||||||||||||||||||||| ||||||||
Sbjct 1266 AGGTATATTCCAAAGGGCATGGAGAACTCAGATTTGTAGA 1305
Score = 497 bits (269), Expect = 9e-140
Identities = 329/358 (92%), Gaps = 4/358 (1%)
Strand=Plus/Plus
Query 1430 TCAAACTTGATGAAATCCTTACTATGTTATCACATTTCTCAAATGCAGAGATAAAAGAAG 1489
|||||||||||||||||||||| || |||||||||||| |||||||||| |||||||||
Sbjct 1319 TCAAACTTGATGAAATCCTTACCGTGCTATCACATTTCTTAAATGCAGAGCTAAAAGAAG 1378
Query 1490 GGGAACAAGAAGATGTTGCCTTTAAGCAGGCATGGCTTATGTACTTCTGGGGTAGAGCCA 1549
|||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1379 GGGAGCAAGAAGATGTTGCCTTTAAGCAGGCGTGGCTGATGTACTTCTGGGGTAGAGCCA 1438
Query 1550 AGTTGCATAGTGTGGAAGAAGACATTGCAGATGAACGTTTCCAGTTTTGGACCAGTCGTA 1609
|||||||| ||||||||||||||||||||||||||||| | |||||||||| |||||| |
Sbjct 1439 AGTTGCATGGTGTGGAAGAAGACATTGCAGATGAACGTATGCAGTTTTGGATCAGTCGCA 1498
Query 1610 GTGA-AGGAAAATCTCCGACTTCACAAGATGCCGTTGACGTGGAACGAGGTTTGTTAGAG 1668
|||| |||||| ||||||||| || |||| ||||||||| ||||| |||||||||||
Sbjct 1499 GTGACGGGAAAA-ATCCGACTTCTCAGGATGTTGTTGACGTGAAACGATGTTTGTTAGAG 1557
Query 1669 CTAAGGAAACTAGGAGTAGAGCAACAATTATGGGAAGCTTGTCGCAAAGAAACAGATCAG 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1558 CTAAGGAAACTAGGAGTAGAGCAACAATTATGGGAAGCTTGTCGCAAAGAAACCGATCAG 1617
Query 1729 CTTCTTCCATCTTCTTCTCCGACATCTACTCTTTCAAATCACAACCTT-GACTCTTAA 1785
||||||||||| ||||||||||| |||||||| |||||||||||| || |||||||||
Sbjct 1618 CTTCTTCCATCCTCTTCTCCGACCTCTACTCTCTCAAATCACAAC-TTCGACTCTTAA 1674
> Ahg485239 jgi|Araly1|485239|fgenesh2_kg.5__1231__AT3G48860.2
Length=2050
Score = 802 bits (434), Expect = 0.0
Identities = 841/1030 (82%), Gaps = 57/1030 (6%)
Strand=Plus/Plus
Query 348 TTCCTTCGCTCGCCGTAA-TCGATCGCATTCACCTGCGATAGGTAGGAACATCACTGAGC 406
||| ||||||| ||| || | |||||| || |||||| |||| |||||| || | ||||
Sbjct 492 TTCTTTCGCTCCCCG-AACTAGATCGCCGTCTCCTGCGTTAGGCAGGAACTTCGCCGAGC 550
Query 407 AAGTGACTTCAGTGCGTTCGT-CGTCGA-CAGGAAGGCCATCAACGTTTAG-TAGAT-CA 462
||||| ||||||||||||| | | || | | |||||||| |||| || | | ||||| ||
Sbjct 551 AAGTGCCTTCAGTGCGTTC-TGCTTC-AGCCGGAAGGCCGTCAATGTCT-GCTAGATCCA 607
Query 463 TCAACTCCGAATGCG-TCTCC-CCTTTGGATGCCACCTA--A-GGCATCGTTGAAACCTC 517
| ||||||| | || | ||| | | ||||| |||| | || ||| ||||| |||
Sbjct 608 -CGACTCCGACTCCGAT-TCCTAATCT-AATGCCGCCTAGTAGGGTGTCGGTGAAAACTC 664
Query 518 CGGTGAT-TATTCCTCCAATTGATCATTCATTTAAGGA-TAGAGATCAAAGATACTTTGG 575
|||| | |||||||||| |||||| | || | |||| |||||| |||| | ||||
Sbjct 665 CGGT-TTCTATTCCTCCACTTGATCCTCCAACT-AGGAGCAGAGATAAAAGGTTTTTTGC 722
Query 576 TGATGTACCACGCTTAGTAAATTCGAGAGATAAGGGGT-ATCAGCGAGAAGCTTCAGCTC 634
|||||||||| | ||||||||| | ||| || |||| ||||||| |||||||||||||
Sbjct 723 TGATGTACCA---TCAGTAAATTCAAAAGA-AAAGGGTGATCAGCGGGAAGCTTCAGCTC 778
Query 635 TTCGTGATGAAGTGGATATGCTACAAGAGGAGAATGAGATTGTATTGGAGAAGCTTCACC 694
| ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||| |
Sbjct 779 TCCGTGATGAACTGGATATGCTACAAGAGGAGAATGAGAATGTACTGGAGAAGCTTCGTC 838
Query 695 GTGCAGAAGAAATGCGTGAGGCAGCAGAAGCCAGGGCTCGA-GAGCTGGAGAAACAGGTT 753
|||| ||||||| | | || ||||||||| |||||| | ||||| || |||||||||
Sbjct 839 GTGCGGAAGAAAAAAGGGTGGAAGCAGAAGCTAGGGCT-AAGGAGCTCGAAAAACAGGTT 897
Query 754 GCTTCTCTTGGAGAAGGAGTGTCTCTGGAGGCTAAATTGTTAAGTA-GAAAGGAAGCGGC 812
|| |||||||||||||||||||| |||||||| ||||||||||| | |||| ||||| ||
Sbjct 898 GCCTCTCTTGGAGAAGGAGTGTCCCTGGAGGCGAAATTGTTAAGCAGGAAA-GAAGCAGC 956
Query 813 ATTGCGCCAACGTGAGGCTGCTCTTAAGGCTGCT-AACGAGAAAAAAGATG-GGAAA-AA 869
||||| ||| | ||||||||||| || |||||| ||| || ||||||| | ||||| |
Sbjct 957 GTTGCGTCAAAGAGAGGCTGCTCTAAATGCTGCTAAAC-AG-AAAAAGA-GTGGAAAGGA 1013
Query 870 GGAGGAAGTTGTTTCCCTCCGTTCAGAAATTCAGATCTTGAAGGATGAGGCAGA-AACAG 928
|| ||| |||||||||| ||||| ||| || ||| |||||| || ||||| | ||| |
Sbjct 1014 TGATGAAATTGTTTCCCTACGTTCGGAACTTGAGAACTTGAAAGACGAGGC-TACAACTG 1072
Query 929 CTGCGGAATGCCTTCAAGAAGCGGAATCAGAAGCAAAGGCTCTTCGTATAATGACTCAAA 988
|||| ||| | ||||||||||| || || ||||||||| ||||||| | |||||||||||
Sbjct 1073 CTGCAGAACGGCTTCAAGAAGCAGAGTCTGAAGCAAAGTCTCTTCGCACAATGACTCAAA 1132
Query 989 GAATGGTTTTAACACAGGACGAAATGGAGGAAGTAGCCT-TGAAGAGATGCTGGCTTGCC 1047
| ||| |||||||||||||||||||||| ||||||| | ||||||||||||||||||||
Sbjct 1133 GGATGATTTTAACACAGGACGAAATGGAAGAAGTAG-TTCTGAAGAGATGCTGGCTTGCC 1191
Query 1048 CGGTATTGGGGTTTGGCAGTGCAGCATGGCATTTGTGCTGACATAGCACCATCCAGGCAT 1107
||||||||||| ||||| ||||| |||||||||||||| || ||||||||||||||||||
Sbjct 1192 CGGTATTGGGGCTTGGCTGTGCAACATGGCATTTGTGCGGATATAGCACCATCCAGGCAT 1251
Query 1108 GAAAAATGGTCGGC-TCTGGCTCCTCTTCCATTTGAGCTGGTCATATCTGCAGCACA-AA 1165
|| | ||||| || | |||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 1252 GAGCACTGGTCAGCGT-TGGCTCCTCTTCCATTTGAGCTCGTCACCTCTGCAGCACAGAA 1310
Query 1166 ----A-G-ACC-AA--GG----A-TGATCAGAGCAAAACTGCTAGATTTTTAAGTGATCT 1211
| | | || || | ||||| ||| || | |||||| ||| ||||||||
Sbjct 1311 GGCGAAGGAGTTAAAAGGTGGGAATGATCGGAGTAAGGCCGCTAGAGATTTGAGTGATCT 1370
Query 1212 ACCTGGAGAAGGAAATATCGAAAGTATGCTTTCAGTTGAGATGGGTTTGAGAGAGCTGGC 1271
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1371 AACTGGAGAAGGAAATATTGAAAGTATGCTTTCAGTTGAGATGGGTTTGAGAGAGCTAGC 1430
Query 1272 ATCCTTAAAGGTTGAGGATGCTGTTATGCTTGCATTCGCACAGAAGAGAACACCGAGTTT 1331
||| ||||||||||||||||||||| |||||| |||||| ||| |||||| || ||||||
Sbjct 1431 ATCATTAAAGGTTGAGGATGCTGTTGTGCTTGTATTCGCCCAGCAGAGAAAACTGAGTTT 1490
Query 1332 GGTTCGTCAA 1341
||||||||||
Sbjct 1491 GGTTCGTCAA 1500
Score = 243 bits (131), Expect = 5e-63
Identities = 215/254 (85%), Gaps = 11/254 (4%)
Strand=Plus/Plus
Query 1486 GAAGGGGAACAAGAAGATGTTGCCTTTAAGCAGGCATGGCTTATGTACTTCTGGGGTAGA 1545
|||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1561 GAAGCGGAACAAGAAGATGTTGCCTTTAAGCAGGCATGGCTGATGTACTTTTGGGGAAGA 1620
Query 1546 GCCAAGTTGCATAGTGTGGAAGAAGACATTGCAGATGAACGTTTCCAGTTTTGGACCAGT 1605
|| |||||||| |||||||||| ||||| ||||| |||||| ||||||| |||| |||
Sbjct 1621 GCTAAGTTGCACGGTGTGGAAGATGACATCGCAGAGGAACGTGTCCAGTTATGGATCAGC 1680
Query 1606 CGTAGT-GAAGGAAAATCTC---CGACTTCACAAGATGCCGTTG-ACGTGGAACGAGGTT 1660
||||| | ||||| |||| ||||||| || |||||| ||| | |||||| |||| |
Sbjct 1681 CGTAGCAGTGGGAAA-TCTCAGACGACTTCTCATGATGCC-TTGGATGTGGAAAGAGGGT 1738
Query 1661 TGTTAGAGCTAAGGAAACTAGGAGTAGAGCAACAATTATGGGAAGCTTGTCGCAA-AGAA 1719
|| |||||||||||||||| ||| |||||||||| || |||||||||| ||| || ||||
Sbjct 1739 TGATAGAGCTAAGGAAACTGGGAATAGAGCAACAGTTGTGGGAAGCTTCTCG-AAGAGAA 1797
Query 1720 A-CAGATCAGCTTC 1732
| | ||||||||||
Sbjct 1798 ATC-GATCAGCTTC 1810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67000740955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5