BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23710.1
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941896 jgi|Araly1|941896|scaffold_602440.1 929 0.0
> Ahg941896 jgi|Araly1|941896|scaffold_602440.1
Length=733
Score = 929 bits (503), Expect = 0.0
Identities = 657/731 (90%), Gaps = 12/731 (2%)
Strand=Plus/Plus
Query 100 GTGAATTTGTAAGAATGAGTAAACGAAAACGTCCGGATCCGAAATCATCGGGAGGTGATC 159
|||||||||||| ||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 7 GTGAATTTGTAACAATGAGTAAACGAAAGCGTCCGGATCCGAAATCATCGGGAAGTAATC 66
Query 160 TAAACGAGCCACACGAGAAGAAGCTTCTGGATCTGATTCGAATAAACCAAGGAAGA-GGC 218
||||||| |||||||||||| ||||| |||||||||||| | |||| ||| | ||
Sbjct 67 TAAACGAACCACACGAGAAGCTTCTTCTCAATCTGATTCGAAGCAGCCAA-GAAAAGGGT 125
Query 219 GCAACTATGTTCGAATTGAAACGCGAGAAAACGATCCCAGCAACTATAG-TTACTCGATT 277
||||| ||| ||||||||||||||| ||||| |||||||||||||| | ||||||||||
Sbjct 126 GCAACGATGAACGAATTGAAACGCGATAAAACTATCCCAGCAACTAT-GATTACTCGATT 184
Query 278 GATC-GCTTCTC-TACGGAAGAAGAATCTCATCAAAGAAGTAGCAAACATGAACAACAAA 335
|| | |||||| || ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 185 GA-CTACTTCTCTTA-AGAAGAAGAATCTCATCAAAGAAGTAGCAAGCATGAACAACAGA 242
Query 336 GGTGTCAAACATTATCTTGCAATGGAGTTTGAGCCTTGTA-GTGAACTTACTGGTGGTGA 394
||||||||||||| |||||| ||||||||||||||| ||| | |||||||||||||| ||
Sbjct 243 GGTGTCAAACATTTTCTTGCTATGGAGTTTGAGCCTGGTAAG-GAACTTACTGGTGGGGA 301
Query 395 ATGGTACACTGATGGAGCTCTTGACCTGTCGAAAATCGAAGATTTGAAAGCCAAGTGTGT 454
|||||||| ||||||| | ||| ||||||||||||||||||||||||| || || |||||
Sbjct 302 ATGGTACATTGATGGAACGCTTAACCTGTCGAAAATCGAAGATTTGAAGGCGAAATGTGT 361
Query 455 GATGATTTTGGAGAGGCATAGGCAGAGGGTTGTTACTTTGGAGGTTTTGTGTGGGTATTT 514
||||||||||||||||||||||| || |||||||| ||||||||| |||||||||||||
Sbjct 362 TATGATTTTGGAGAGGCATAGGCATAGAGTTGTTACGTTGGAGGTTATGTGTGGGTATTT 421
Query 515 TGTTAAAGAGGAGAAGCTGAGTGTTGATCAGACTAAGGAGATACTTAAGAACTTGATTTT 574
|||||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 422 TGTTAAAGAGGAGAAGTTGAGTGTAGAGCAGACTAAGGAGATACTTAAGAACTTGGTTTT 481
Query 575 GGATAATTTGATCATGGAGGTGAAGAGTAATGGAATGAATGAGTTTGCTTCTACGAGAAT 634
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 482 GGATAATGTGATCATGGAGGTGAAGAGTAATGGATTGAATGAGTTTGCTTCTACGAGAAT 541
Query 635 CGGAGAAGTTTGCTACAGGTTGACCGGGAA-AAAGTTCGGTAATGGCGAACCGAGAGCTG 693
|||||||||||||||| |||||| ||||| ||| | ||||||||| ||| |||||||||
Sbjct 542 TGGAGAAGTTTGCTACAAGTTGACGGGGAAGAAA-TCCGGTAATGGTGAAGCGAGAGCTG 600
Query 694 GAGCTTTTGCTTCGATTCCTTGCGGGGTTTGTCCGCATATAGCGATCTGTTCACCTGATG 753
|||||||||||||| | |||||||||| |||||||||||||| | | |||||||||||||
Sbjct 601 GAGCTTTTGCTTCGGTGCCTTGCGGGGCTTGTCCGCATATAGGGCTTTGTTCACCTGATG 660
Query 754 GTGTTATCTCTCCCACTACATGTGTTTATTTTCAGAAATGGTTAGACTTTTAGCACTCTC 813
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 GTGTTATCTCTCCGACTACATGTGTTTATTTCCAGAAATGGTTAGACTTTTAGCACTCTC 720
Query 814 ttttttttttt 824
| |||| ||||
Sbjct 721 TGTTTTGTTTT 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32518848201
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5