BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23720.1
Length=3115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489232 jgi|Araly1|489232|fgenesh2_kg.6__2366__AT5G23720.1 4883 0.0
> Ahg489232 jgi|Araly1|489232|fgenesh2_kg.6__2366__AT5G23720.1
Length=3091
Score = 4883 bits (2644), Expect = 0.0
Identities = 2926/3064 (95%), Gaps = 12/3064 (0%)
Strand=Plus/Plus
Query 4 TTCCTCTTCTCAGATACAAAGCTGACATTTGAAGAAAAAGAC--ATTTCTAAAATTAAA- 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 TTCCTCTTCTCAGATACAAAGCTGACATTTGAAGAAAAAGACATATTTCTAAAATTAAAC 60
Query 61 ---CAGAACCTAAGCTTTTGCAATGGCGGAACCTGAGAAGAAGCGAGATCAACCATTTTC 117
||| | | |||||||| |||||||||| ||||||||||||||||||||| |||||||
Sbjct 61 TCTCAG-A-CGAAGCTTTTTCAATGGCGGATCCTGAGAAGAAGCGAGATCAATCATTTTC 118
Query 118 TCAAGAAAAAGACGAAGAGAAAGATCTATACCTTGTTCACGACGAGCACGAGTCTCCTCT 177
|||||| |||||||| |||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 119 TCAAGAGAAAGACGACGAGAAATATCTCTACCTTGGTCACGACGAGCACGAGTCTCCTCT 178
Query 178 TCCTCTCACCGTCACTTCTCGTGTTTTGTACATGTTAGGAGATATAGCATCTGGTCCAGC 237
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 179 TCCTCTCACCGTCACTTCTCGTGTTTTGTACATGTTAGGAGACATAGCATCTGGTCCAGC 238
Query 238 TTATAGGTTTACTCAATGGTTGGATTTAGTTCGTAAACGAAGTGCTACTTACGGATCCTC 297
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCATAGGTTTACTCAATGGTTGGATTTAGTTCGTAAACGAAGTGCTACTTACGGATCCTC 298
Query 298 TGGCTTCCCTCACCGCCTTCACCGCATCGATGATATGGTCACTAGTGCAGGAGAGAGGAA 357
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 299 TGGCTTCCCTCACCGCCTTCACCGCATCGATGATATGGTTACTAGTGCAGGAGAGGGGAA 358
Query 358 TACTGATCCTAAAAGTCCACCAAGTAGGCAGAGTTCAGAGATTAGTTTGTGGGAAAGGCT 417
|| |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 359 TATTGATCCAAAAAGTCCACCAAGTAAGCAGAGTTCAGAAATTAGTTTGTGGGAAAGGCT 418
Query 418 TGGTAAAGCTTCTACTGTGGATATTGATTCGAGCTGTTTTTCATGGAATATGTTGTCTTC 477
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 419 TGGTAAAGCTTCTACTGTGGATATCGAATCGAGCTGTTTTTCGTGGAATATGTTGTCTTC 478
Query 478 ACTTCATCATACTGAACATAGTAGTAGCACTGATCATTCTGAAGAAGACCAGAGTAAACC 537
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 479 ACTTCATCATACTGAGCATAGTAGTAGCACTGATCATTCTGAAGAGGACCAGAGTAAACC 538
Query 538 ACTTGAGGTTACTGTGAATTCTGGAGGAGTTGTTTTCTTTGCCCTGTTCAATAGTTCCAG 597
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 539 ACTTGAGGTTACTGTGAATTCTGGGGGAGTTGTTTTCTTTGCCCTGTTCAACAGTTCCAG 598
Query 598 CTCTGAAGATGCCTCTCGTAAGGAAGAAGCAGCAGTTATTAAATTTGCATCATCGAGGAT 657
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 599 CTCTGAAGATGCTTCTCGTAAGGAAGAAGCAGCAGTTATAAAATTTGCATCATCGAGGAT 658
Query 658 GGCCACGCAATCAGAACGTCTAGGTTATGAGTTTTCCAAGTGGCTAGGGGTGCAGATTCC 717
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 GGCCACGCAATCAGAACGTCTAGGTTATGAGTTTTCCAAGTGGCTAGGGGTTCAGATTCC 718
Query 718 GCAGGCTAGAGTAATTCACAGCTGTAATCCTGAGTGGACACTGATCAAAGAAGCCACTGA 777
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GCAGGCTAGAGTAATTCATAGCTGTAATCCTGAGTGGACACTGATCAAAGAAGCCACTGA 778
Query 778 AAAAGCACAAGCTAAAGCGACTTCGGAGGGGGACGAGGTTGGTGAAATGACATGTTCAGA 837
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||
Sbjct 779 AAAAGCACAAGCTAAAGCGACTTTGGAGGGAGACGAAGTTGGTGAAATGACATGTTCAGA 838
Query 838 ACTTCTGGAAGCCCTTGAGCTCAGCCGTTGTCTTCTCTTAATGAGTTATGTTCATGGATG 897
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 839 ACTTCTGGAAGCCCTTGAGCTCAGCCGTTGTCTTCTCCTAATGAGTTATGTTCATGGATG 898
Query 898 TCCAATGCTGGAGAGCATGAGTAGTTTTGAAACTGAAGAAAAAGCAGAGAGAGCTGCTGC 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TCCAATGCTGGAGAGCATGAGTAGTTTTGAAACTGAAGAAAAAGCAGAGAGAGCTGCTGC 958
Query 958 AGCTCTAGGGAGAATCTTGGTGTTAGATCTAGTAATTAGGAATGAAGACAGATTACCGTG 1017
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 959 AGCTCTAGGGAGAATCTTGGTGTTAGATCTAGTAATTAGGAACGAAGACAGATTACCTTG 1018
Query 1018 TCGTCAGCTGAGATGGCGTGGCAACCCGGCAAATCTGTTACTGACAGACAGAATTGTGTC 1077
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 TCGTCAGCTGAGATGGCGTGGCAACCCGGCAAATCTGTTATTGACAGACAGAATTGTGTC 1078
Query 1078 TTCTGCAAAGCATCATGAATGTTCATTTGATGAAGCTTTTGATTCCGCCATCAAACGGTA 1137
|||| |||| |||| |||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 1079 TTCTACAAAACATCTTGAATGCTCATTTGAAGAAGCTTTTGATTCCGCCATTAAACGGTA 1138
Query 1138 CCATCCAAAGGACTATAGATCCATTCAAAGGGAAAGAAGAGCTTCTTCCGTAGATAGCAG 1197
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1139 CCATCCAAAGGACTACAGATCCATTCAAAGGGAAAGAAGAGCTTCTTCTGTAGATAGCAG 1198
Query 1198 ATCCAGGTTGAGTATCAGTGATCAAATGTTGGTCTCACAGGCTTCTGATTTTTCTGATAT 1257
||||||| |||||||||||||||||||||||||||||||| | |||| |||||| |||||
Sbjct 1199 ATCCAGGCTGAGTATCAGTGATCAAATGTTGGTCTCACAGTCGTCTGGTTTTTCCGATAT 1258
Query 1258 AACGGAATCACCTAGATCATATGATACTGGTTTAATGAGTCCAATGTCTGATAGATCAGT 1317
|||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1259 AACGGAATCACCTAAATCGTATGACACTGGTTTAATGAGTCCAATGTCTGATAGATCAGT 1318
Query 1318 AGCTGCCGATTTTCACCTCGTTGCCATAGACTCGGGTGTTCCACGGCGGCCTCCTGCTGG 1377
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AGCTGCTGATTTTCACCTTGTTGCCATAGACTCGGGTGTTCCACGGCGGCCTCCTGCTGG 1378
Query 1378 AAAACGGGCAAGCGACCAAGAAATTTATCCAAGATTAGTTGAGTTACTCCTCAATAGTAG 1437
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1379 AAAACGGGCCAGCGACCAAGAAATTTATCCAAGATTAGTTGAGCTACTCCTCAATAGTAG 1438
Query 1438 CCAATATTCTTCGAATTTGTTACATGAAATAACAGAAGGAAGTTTAGGATATCCACAGGC 1497
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1439 CCAATACTCTTCGAATTTGTTACATGAAATAACAGAAGGAAATTTAGGATATCCACAGGC 1498
Query 1498 AGAAGATGGTGAAGAAACATCTAATGTTCGATCTGTAGTAACACCAGTTGTACGCGAGTT 1557
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1499 AGAAGATGGTGAAGAAACATCTAATGTTCGATCTGTAGTAACACCAGTTGTACGTGAGTT 1558
Query 1558 TCGAAATGGTTTCCGAGCTGGTCTCAGGGATTTGCAAGAGTTTCACATCTTCCTTGTCAC 1617
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CCGAAATGGTTTCCGTGCTGGTCTCAGGGATTTGCAAGAGTTTCACATCTTCCTTGTCAC 1618
Query 1618 CCTTCATCAGAAATTAGATGTGTTGCTTCGGGCATTTTTTAGTATGATGGACAAAACAAT 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 CCTTCATCAGAAATTAGATGTGTTGCTTCGGGCATTTTTTAGTATGATGGACAAAACAAT 1678
Query 1678 GTGTGCAGATTTTGACAGAGAAGACTTTGCTGTTCCTGAGTCACCTTCACATACTCATGG 1737
|||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||||
Sbjct 1679 GTGTGCAGATTTTGACAGAGAAGATTTTTCTGTTCCTGAGTCACCTTCACAAACCCATGG 1738
Query 1738 GCATGAGGTGAATCATTATCCATCTCCCTCAAAAGATCGGGTGCCTAGTGATAACAGCTC 1797
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1739 GCATGAGGTGAATCACTATCCATCTCCCTCAAAAGATCGGGTGCATAGTGATAACAGCTC 1798
Query 1798 TGATCACAGTGAGTCAGATATGCAAAAATCAGTTCCTAGGACACCAAATTCAGAAAACAA 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 TGATCACAGTGAGTCAGATATGCAAAAATCAGTTCCTAGGACACCAAATTCAGAAAACAA 1858
Query 1858 AGAAGACGGGTCTTCGCCTAAGTCACGTGAAAGTTGGCACGGAAGATCCGGTAAAGGTGG 1917
|||||| | | ||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1859 AGAAGATGCGAGTTCGCCTAAGTCACGTGAAAGTTGGCATGGAAGATCCAATAAAGGTGG 1918
Query 1918 AGAATCTCTTAGCAGTCAGCGTTTGGCAGCAAAGCTCCGTGACTTCCATAAGTTTGCAAA 1977
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 1919 AGAATCTCTTAGCAGTCAGCGTTTGGCATCAAAGCTCCGCGACTTCCATAAGTTTGCTAA 1978
Query 1978 GGTTGATGCTGAGTCTAATAAAGAACTAGACCAGTGGAATGAAACACTGCGGAATGAAGT 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 GGTTGATGCTGAGTCTAATAAAGAACTAGACCAGTGGAATGAAACACTGCGGAATGAAGT 2038
Query 2038 GATGAAACTTTGCCAAGAGAACGGTTTCAACACTGGtttttttGAGGGCAGTGATAATAA 2097
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2039 TATGAAACTCTGCCAAGAAAACGGTTTTAACACTGGTTTTTTTGAGGGCAGTGATAATAA 2098
Query 2098 CAGTTGCACAGATGCTTATGAGCTAAAGGTTAGACTTGAGCATATTCTTGAGAGGATATC 2157
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 CAGTTGCACAGATGCTTACGAGCTAAAGGTTAGACTTGAGCATATTCTTGAGAGGATATC 2158
Query 2158 ATTGATTAGCAAAGCTGCTAATACAGAGAAACCATCAATGATACAAGAAAATCTTTTTAT 2217
||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2159 ATTGATTTGCAAAGCTGCTAATACGGAGAAACCATCAATGATACAAGATAATCTTTTTAT 2218
Query 2218 CGGGGGAGGATTGGCTGCAAGGTCGATTTACACTCTTCAGCATTTAGGTATAACTCATGT 2277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2219 CGGGGGAGGATTGGCTGCAAGGTCGATTTACACTCTTCAGCATTTAGGTATAACTCATAT 2278
Query 2278 TCTATGTTTGTGCGCTAATGAAATCGGGCAATCGGATACTCAATACCCGGATCTCTTCGA 2337
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 2279 TCTATGTTTGTGCGCTAATGAAATCGGTCAATCGGATACTCAATACCCGGATCTCTTCAA 2338
Query 2338 GTACCAAAACTTCTCAATAACCGATGATGAAGACTCAAATATCGAGAGCATCTTTCAAGA 2397
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 2339 GTACCAAAACTTCTCAATAACCGACGAAGAAGACTCAAAGATCGAGAGCATCTTTCAAGA 2398
Query 2398 AGCTCTCGATTTCATCAAGCATGGCGAAGAAACTGGTGGCAAGATTTTAGTTCATTGCTT 2457
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2399 AGCTCTCGATTTCATCAAGCATGGCGAAGAAACAGGTGGCAAGATTTTAGTTCATTGCTT 2458
Query 2458 CGAAGGTCGGAGTAGAAGCGCAACAGTAGTGCTTGCTTACCTAATGCTCCAAAAGAAGCT 2517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2459 CGAAGGTCGGAGTAGAAGCGCAACAGTAGTGCTTGCTTACCTAATGCTCCAAAAGAACCT 2518
Query 2518 CACACTTTTAGAAGCATGGAGCAAACTGAGGAAAGTTCATAGACGAGCTCAACCGAATGA 2577
||||| |||||||||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 2519 AACACTATTAGAAGCATGGGGCAAACTGAGGAAAGTTCATAGACGAGCTCAACCAAACGA 2578
Query 2578 TGGATTTGCGCGGATCTTAATAAACCTCGACAAGAAATGTCACGGGAAAGTATCAATGGA 2637
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2579 CGGATTTGCGCGGATCTTAATTAACCTCGACAAGAAATGTCACGGGAAAGTGTCAATGGA 2638
Query 2638 GTGGAGACAGAGGAAACCGACAATGAAAGTGTGTCCGGTTTGTGGAAAGAACGCAGGTCT 2697
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2639 GTGGAGACAGAGGAAACCGACAATGAAAGTGTGTCCGGTTTGTGGTAAGAACGCAGGTCT 2698
Query 2698 AAGCAGCAGTTCTTTGAAGCTTCATCTCCAGAAATCTCACAGGAAACTGTCTTCGGGAAG 2757
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2699 AAGCAGCAGTTCTCTGAAGCTACATCTCCAGAAATCTCACAGGAAACTGTCTTCGGGAAG 2758
Query 2758 TGTTGACAGTGCAATGAACATGGAGATTCAAAAGGCTTTGGAGGCTCTTAAACTCAGCAC 2817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2759 TGTTGACAGTGCAATGAACATGGAGATTCAAAAGGCTTTGGAGGCTCTTAAACTCAGCAC 2818
Query 2818 TGGCCGTGGCTCAAGTGCTAGTTCCAATTCTTTCCAATCTCATCCTGGTTAGAGAGTCCG 2877
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 2819 TGGCCGTGGCTCAAGCGCTAGCTCCAATTCTTTCCAATCTCATCCTGGTTAGAGATTCCG 2878
Query 2878 GTTTGGTTTTATCTATGGTTTGTCCCGGTTAAAGTCTCTCTAATCGTACATCTCTGAACA 2937
|||| ||||||||| |||||||||||||||||||||||| ||||| |||| | || |
Sbjct 2879 GTTTAGTTTTATCTTTGGTTTGTCCCGGTTAAAGTCTCT--AATCGAACATATAAAAAAA 2936
Query 2938 AAAACAT--TGATCTGttttgttttgttttttACTGTAACGATCTTTGTACTTGTATACG 2995
|||| | ||||| |||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct 2937 AAAAAAAACTGATCCGTTTGGTTTTGTTTTTTACTGTAACTATCTTTGTAATTGTATACC 2996
Query 2996 CAAGTAAATAAAAAGCCGAAAAGCTGAATAGAAGTCACTGGGAAACGTCATAATAAGCTA 3055
||| ||||||||||||||||||| |||||| |||||||||| |||||||| |||||||||
Sbjct 2997 CAACTAAATAAAAAGCCGAAAAGTTGAATACAAGTCACTGGAAAACGTCACAATAAGCTA 3056
Query 3056 ATGT 3059
||||
Sbjct 3057 ATGT 3060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117660766805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5