BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23740.1
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941900 jgi|Araly1|941900|scaffold_602444.1 841 0.0
Ahg937661 jgi|Araly1|937661|scaffold_501852.1 566 1e-160
> Ahg941900 jgi|Araly1|941900|scaffold_602444.1
Length=521
Score = 841 bits (455), Expect = 0.0
Identities = 499/520 (96%), Gaps = 3/520 (1%)
Strand=Plus/Plus
Query 87 GAGAGCAGCAATCAGTAGCCATGGCTGAGCAGACTGAGAAAGCTTTTCTTAAGCAACCCA 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAGCAGCAATCAGTAGCCATGGCTGAGCAGACTGAGAAAGCTTTTCTTAAGCAACCCA 60
Query 147 AGGTCTTCCTTAGCTCGAAGATATCTGGGAAAGGAAAGAGACCTGGTAAAGGTGGAAACC 206
| |||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 61 AAGTCTTCCTAAGCTCGAAGACATCTGGGAAAGGAAAGAGACCTGGAAAAGGTGGAAACC 120
Query 207 GTTTCTGGAAGAACATTGGTTTGGGTTTCAAGACTCCTCGTGAAGCCATTGATGGAGCTT 266
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 GTTTCTGGAAGAACATTGGTTTGGGTTTCAAGACTCCTCGTGAAGCCATTGAAGGAGCTT 180
Query 267 ACATTGACAGTAAATGTCCATTCACTGGAACCGTTTCTATCAGAGGACGTATCTTAGCTG 326
||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 181 ACATTGACAGTAAATGTCCATTCACTGGAACTGTTTCTATCAGAGGTCGTATCCTAGCTG 240
Query 327 GTACTTGCCACAGTGCCAAGATGCAGAGAACCATCATTGTTCGTAGGAATTACCTTCACT 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTACTTGCCACAGTGCCAAGATGCAGAGAACCATCATTGTTCGTAGGAATTACCTTCACT 300
Query 387 TTGTGAAGAAGTATCAACGATATGAGAAGAGACATTCCAACATCCCTGCCCATGTCTCAC 446
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 301 TTGTGAAGAAGTATCAACGATATGAGAAGAGACATTCCAATATCCCTGCTCATGTCTCAC 360
Query 447 CGTGTTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAATGCAGGCCGTTGTCGA 506
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGTGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAATGCAGGCCGTTGTCGA 420
Query 507 AGACGGTTAGGTTCAATGTGCTGAAGGTGATTCCAGCGGGTGCATCTGCCTTTGGTAAAA 566
|||| || |||||||||||| |||||||||| |||||||| ||||| ||||||||||| |
Sbjct 421 AGACAGTCAGGTTCAATGTGTTGAAGGTGATCCCAGCGGGCGCATCCGCCTTTGGTAAGA 480
Query 567 AGGCCTTCACTGGAGTGTAAGAGTTTTGA-AA-GTCATGG 604
||||||||||||||||||||||||||||| || ||| |||
Sbjct 481 AGGCCTTCACTGGAGTGTAAGAGTTTTGAGAAAGTC-TGG 519
> Ahg937661 jgi|Araly1|937661|scaffold_501852.1
Length=524
Score = 566 bits (306), Expect = 1e-160
Identities = 433/493 (88%), Gaps = 13/493 (3%)
Strand=Plus/Plus
Query 103 AGCCATGGCTGAGCAGACTGAGAAAGCTTTTCTTAAGCAACCCAAGGTCTTCCTTAGCTC 162
||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 17 AGCCATGGCGGAACAGACTGAGAAAGCTTTTCTTAAGCAGCCTAAGGTCTTCCTTAGCTC 76
Query 163 GAAGATATCTGGGAAAGGAAAGAGACCTGGTAAAGGTGGAAACCGTTTCTGGAAGAACAT 222
||||| |||||| ||||| ||| ||||||| ||||||||||||||||||||||||| |||
Sbjct 77 GAAGAAATCTGGAAAAGGGAAGCGACCTGGGAAAGGTGGAAACCGTTTCTGGAAGAGCAT 136
Query 223 TGGTTTGGG-TTTCAAGACTCCTCGTGAAGCCATTGATGGAGCTTACATTGACA-GTAAA 280
||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 137 TGGTTTGGGCTTT-AAGACTCCTCGTGAAGCCATTGATGGAGCTTACGTTGACAAG-AAA 194
Query 281 TGTCCATTCACTGGAACCGTTTCTATCAGAGGACGTATCTTAGCTGGTACTTGCCACAGT 340
|| || ||||||||||| ||||| || ||||| ||||||||||| |||||||||||||||
Sbjct 195 TGCCCCTTCACTGGAACTGTTTCCATTAGAGGTCGTATCTTAGCCGGTACTTGCCACAGT 254
Query 341 GCCAAGATGCAGAGAACCATCATTGTTCGTAGGAATTACCTTCACTTTGTGAAGAAGTAT 400
|| || |||||||| ||||| || || || ||| ||||||||||||||||||||||||||
Sbjct 255 GCTAAAATGCAGAGGACCATTATCGTGCGAAGGGATTACCTTCACTTTGTGAAGAAGTAT 314
Query 401 CA-ACGATATGAGAAGAGACATTCCAACATCCCTGCCCATGTCTCACCGTGTTTCCGTGT 459
|| | | ||||||||||| ||||| ||||| ||||| ||||| || || || ||||||||
Sbjct 315 CAGAGG-TATGAGAAGAGGCATTCAAACATTCCTGCTCATGTATCTCCATGCTTCCGTGT 373
Query 460 CAAGGAAGGTGACCATGTCATCATTGGCCAATGCAGGCCGTTGTCGAAGACGGTTAGGTT 519
|||||||| |||||| |||||||||||||||||||||| ||||||||||| || |||||
Sbjct 374 TAAGGAAGGAGACCATATCATCATTGGCCAATGCAGGCCATTGTCGAAGACAGTGAGGTT 433
Query 520 CAATGTGCTGAAGGTGATTCCAGC-GGGTGCATCTGC--CTTT-GGTAAA-AAGGCCTTC 574
||||||| |||||||||| ||||| |||| | ||| | |||| || ||| ||||| |||
Sbjct 434 CAATGTGTTGAAGGTGATACCAGCTGGGT-CTTCTTCTTCTTTTGG-AAAGAAGGCATTC 491
Query 575 ACTGGAGTGTAAG 587
|||||| ||||||
Sbjct 492 ACTGGAATGTAAG 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30574579434
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5