BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G23760.1

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941902 jgi|Araly1|941902|scaffold_602446.1                        547    3e-155


> Ahg941902 jgi|Araly1|941902|scaffold_602446.1
Length=354

 Score =  547 bits (296),  Expect = 3e-155
 Identities = 323/336 (96%), Gaps = 1/336 (0%)
 Strand=Plus/Plus

Query  99   AATGGCTCAGAAAGTGGTGCTGAAGGTTTTAACCATGACTGATGATAAGACGAAGCAGAA  158
            ||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||
Sbjct  20   AATGGCTCAGAAAGTGGTGTTGAAGGTTTTAACCATGACTGATGATAAAACCAAGCAGAA  79

Query  159  AGCCATAGAAGCTGCAGCTGATATCTTCGGAGTTGATTCCATAGCAGCGGATATGAAGGA  218
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  80   AGCCATAGAAGCTGCAGCTGATATCTTCGGAGTTGATTCGATAGCAGCGGATATGAAGGA  139

Query  219  TCAAAAATTGACGGTGATCGGTTTGATGGATGCGGTTGCGGTGGTGAAGAAGTTGAAGAA  278
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  140  TCAAAAATTGACGGTGATCGGTTTGATGGATGCGGTTGCGGTGGTAAAGAAGTTGAAGAA  199

Query  279  GGTTGGTAAAGTCGATTTGATATCGGTTGGACCGGCaaaagaagagaagaaagaagagaa  338
            |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  200  GGTTGGTAAAGTCGATTTGATATCGGTTGGACCGGCGAAAGAGGAGAAGAAAGAAGAGAA  259

Query  339  gaaggaagagaagaaagaggaaaagaaagaggagaagaaggaagagcagaaagaagaaga  398
            ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct  260  GAAGGAAGAGAAGAAAGAGGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAAGA  319

Query  399  acctaagaaaTAAGTGACTCGAATTGCTATTAAAAC  434
            ||||||||||||||| |||||| |||||||| ||||
Sbjct  320  ACCTAAGAAATAAGTAACTCGA-TTGCTATTGAAAC  354



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20756640416


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5