BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23770.2
Length=2027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894258 jgi|Araly1|894258|Al_scaffold_0006_2254 1271 0.0
Ahg489241 jgi|Araly1|489241|fgenesh2_kg.6__2375__AT5G23800.1 761 0.0
> Ahg894258 jgi|Araly1|894258|Al_scaffold_0006_2254
Length=1719
Score = 1271 bits (688), Expect = 0.0
Identities = 1005/1152 (87%), Gaps = 46/1152 (4%)
Strand=Plus/Plus
Query 758 GTCCTTTAGCTGCGAGGGAAAAAAGGCAAG-ACCCAACAAAACCGTTGATTTGTC-TAGT 815
|||||| |||||| || | | ||| | || ||||||||||| |||||||||| | ||||
Sbjct 600 GTCCTTGAGCTGCAAGAGTAGTAAGTC-AGAACCCAACAAAATCGTTGATTTG-CGTAGT 657
Query 816 CTTAGGCCTATA---CC-AGTA--TCAG-TTGACGAGTATCAGTTGGAGGAAAACGTAGA 868
|||||||||| | || || || | |||| |||||||| | ||||||| |||||||
Sbjct 658 CTTAGGCCTACACCGCCTTCTATTTC-GATTGATGAGTATCAATCGGAGGAATACGTAGA 716
Query 869 GGTGTTTCTTGATGGTATGGGGTGGCGTCATGGACGAGTGATGGGAAGTCAAGAGCGAGC 928
|||||||| || ||||||||| |||||||| ||||||||||| | | || | |
Sbjct 717 GGTGTTTCATGGTGGTATGGGATGGCGTCAAGGACGAGTGAT--G--G----GA---A-C 764
Query 929 GATAGGAACACTCTCTCAGAAATGGTATTTTGTGCGTTTGGAATCTACAAAG-AAGCAAT 987
| ||||||||||||| |||| |||| ||| || |||||||| ||| |||
Sbjct 765 --T-------CTCTCTCAGAAATTGTATACAGTGCTTTTAGAGGCTACAAAGAAAG-AAT 814
Query 988 TAACGTTCAAGCAGTCGGATCTTAGGCCTTTGAAGGTGTGGGAAGATGGCGTTTGGAAGG 1047
| ||||| || ||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 815 TGGTATTCAAACACTCGGATCTTAGGCCTTTGAAGGTTTGGGAAGATGGCATTTGGAAGA 874
Query 1048 TGTTGCAGACAAGGGAATTGTCGTTTACTCAGGGATCAGGAGATAAGACCG-GTGATTCT 1106
|||||||||||||||||| | |||| |||||| ||||||| |||||| | |||||||
Sbjct 875 TGTTGCAGACAAGGGAATCGCCGTTAACTCAGAAATCAGGATATAAGA-TGAGTGATTCA 933
Query 1107 GTGAGGAATGCAAATGAATCTGATCCACCTTTAACTCCACCTCCGGGCATAATTACACCA 1166
|||| ||||||||||||||||||||||||| ||||||||||||||||||||| || | ||
Sbjct 934 GTGATGAATGCAAATGAATCTGATCCACCTGTAACTCCACCTCCGGGCATAACTATAACA 993
Query 1167 CCGTTGAAACAA-ATAGAGGCTGGAACTCAAAGAAAGGCACTCTCCAAGAAGACACTTCC 1225
|||||||||||| | |||||||| ||||||||||||| || || ||||||||||||||||
Sbjct 994 CCGTTGAAACAAGA-AGAGGCTGAAACTCAAAGAAAGACATTCCCCAAGAAGACACTTCC 1052
Query 1226 AAGGAATCAGAATGGCTCGGGAAACGATTCAACGCTAGAGAATGAAAATAGCGAAGATAA 1285
||||||||||||||| || |||||||||||||| | |||||||||||||| |||||||
Sbjct 1053 AAGGAATCAGAATGGTTCAGGAAACGATTCAACACGAGAGAATGAAAATATCGAAGATGT 1112
Query 1286 CAATCGAAAGAGGAAAAGAGAAGAAAACCTTGGTTGTGTTGCTAGTGTTGAGCAAGACAA 1345
|||||||||||||||||||||||||||||| ||| || |||||||| |||| |||||||
Sbjct 1113 TAATCGAAAGAGGAAAAGAGAAGAAAACCTTTGTTCTGATGCTAGTGCTGAGGAAGACAA 1172
Query 1346 ACCAAAGGATACAACAATGGTTTTACCCTTTGAGAAGAAGTTACGAATTTGGGAGACACT 1405
| |||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1173 AGCAAAGGATACAAGAATGGTTTTGCCCTTTGAGAAGAAGTTACGAATTTGGAAGACACT 1232
Query 1406 AGAATCAATGGAGGTGTTTAAAACAGTCCCACAGAGTCCTCATTTCAGCCCATTATTGGT 1465
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1233 AGAATCAATGGAGGTGTTTAAAACAGTCCCACAAAGTCCTCATTTCAGCCCATT---GGT 1289
Query 1466 GGAGAGTAGAGAAGACTCCCGTGAAATGTCTGCGGTTGGTATGATGCTTACCTTTTTTGG 1525
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1290 GGAGAGTAGAGAAGATTCCCGTGAAATGTCTGCGGTTGGTATGATGCTTACCTTTTCTGG 1349
Query 1526 TTTACTTGATGAAGTCAAAGCTCTGCAACACAACGATCCCATAAGCTTTTTT-ATAAGCC 1584
||||||||||||||||||||||||||||||| | ||||||||||||| || ||| |||
Sbjct 1350 TTTACTTGATGAAGTCAAAGCTCTGCAACACGATGATCCCATAAGCTCATTCGATA-GCC 1408
Query 1585 TCACTAATTC-TTTTGCCGAGTTAGAGAAACACGGGTTCAATGTAAAAGCACCTCAGTCA 1643
| | | |||| |||| || ||||||||||||||||| |||||||||||| |||||||| |
Sbjct 1409 TTAATGATTCCTTTT-CCAAGTTAGAGAAACACGGGCTCAATGTAAAAGTACCTCAGTTA 1467
Query 1644 CGGATCAATAAGCTGTTGTCTCTCAGAGATAGACAATCAAAGAAAACAGAGGAACTCAAA 1703
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1468 CGGCTCAATAAGCTGTTGTCTCTCAGAGATAGACAATCAATGAAAACAGAGGAACTCAAA 1527
Query 1704 GATGCCGAGAAAGTGACCGCAGAGAAAGAGAGCGTAAAAGCTGAGAACAAACGCAAGATT 1763
| ||||||||||||||| |||||||||||||||||||| ||||||||| | |||||||||
Sbjct 1528 GGTGCCGAGAAAGTGACGGCAGAGAAAGAGAGCGTAAAGGCTGAGAACGAGCGCAAGATT 1587
Query 1764 CTTGAGCTGCAAAGGCTAAATGAAGAGATGGACAAAGAGATAGCTCAAAGTAAGTCATGT 1823
|| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1588 CTCGAGCTGCAGAGGCTGAATGAGGAGATGGACAAAGAGATAGCTCAAAGTAAGTCATGT 1647
Query 1824 GCAGCAAAGATTGTCCAACAGCTCGATGATGTGAAGCTTGAGTTTCTGGCAACAGCATCA 1883
||| ||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||
Sbjct 1648 GCAACAAAGATTGTCCAACAGCTTGATGATGTGAAGCTTGAGTTTAAGGCAACTGCATCA 1707
Query 1884 GCTCCATGGTAA 1895
||||||||||||
Sbjct 1708 GCTCCATGGTAA 1719
Score = 337 bits (182), Expect = 2e-91
Identities = 282/329 (86%), Gaps = 12/329 (4%)
Strand=Plus/Plus
Query 382 GCATTCCTATCAAGATAGGCTCCATCGTCGAAGCTGATTATAAAGATGCGTGGGTCACTG 441
||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||
Sbjct 278 GCATTCCTATCAAGATAGGCTGCATCGTTGAAGCTGATTATAAATATGCGTGGGTCACTG 337
Query 442 GTTTTGTGGTCAAAGAGATTGATG-TTGGCAAGTGTTTGGTGTGCTTTGATTCAATACCT 500
|||||||||||||||||||||||| || ||||||||||||||| ||| ||||| ||||
Sbjct 338 GTTTTGTGGTCAAAGAGATTGATGATTA-CAAGTGTTTGGTGTGTTTTTATTCACCACCT 396
Query 501 GATGTTATTCTGTTTGAGAGAAAGCTTTTGAGGCCTCATCTTCAGTGGCTCGATGATAGT 560
||| |||||| |||||||||||||||||||||||| ||||| ||||||| | ||| ||
Sbjct 397 GATATTATTCACTTTGAGAGAAAGCTTTTGAGGCCTTATCTTGAGTGGCTTGGTGAGAG- 455
Query 561 G-GATATACATTTTGGGATATGGTA--TCGAAA-CATTATCGAAA-GTTCTTGAGACGGT 615
| || | || |||| | || | || | | | || |||| ||||||||| ||||
Sbjct 456 GAGAGACCCAGGTTGGT-TC-GGAACATC-ACGGCGTAAT-GAAAAGTTCTTGAGGCGGT 511
Query 616 TGGCTGAAGAGCCTATGTTTAGTCCTGGAACAATGGTGGAAGTGAGTTCTAAGATAAATG 675
| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 512 TAGCTGAGGAGCCTATGTTTAGTCCCGGAACAATGGTGGAAGTGAGTTCTAAGATAAATG 571
Query 676 AAGGTGAAGTCGTTTGGGTTCCTTCAATG 704
|| ||||||||||||||||||| |||||
Sbjct 572 AAACTGAAGTCGTTTGGGTTCCTGCAATG 600
Score = 198 bits (107), Expect = 1e-49
Identities = 176/208 (85%), Gaps = 10/208 (5%)
Strand=Plus/Plus
Query 173 TGGGAGT-GAAAGACCTTCCATGGAGGAAGGTTGTGAATTCGAAATCTATAATAAAAAGG 231
||||||| ||| | |||||||||||||||||||||||||||||||||| | | | || ||
Sbjct 12 TGGGAGTGGAATG-CCTTCCATGGAGGAAGGTTGTGAATTCGAAATCTCTTACAGAATGG 70
Query 232 ATCCGAGATCT-TATCATCTTACGTTTAGAAGTCGAAATATCTTAGAAGACGTTTGGTAC 290
|||||| |||| | || | ||| || || | | | ||||||||||||| || |||||
Sbjct 71 ATCCGACATCTCT-TCGTATTATGTCTA-CA-T-G---TATCTTAGAAGACATTCGGTAC 123
Query 291 AAAGCCATCGTCGAGGCAAAACCTCCAAAGAGTCCCAAATCTAAACGCAGTGTACTCTGT 350
||||| || |||| |||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 124 AAAGCTATTGTCGTGGCAAAACCTCCCAAGAATCCCAAATCTAGACGCAGTGTACTCTGT 183
Query 351 GTTCGGTTGCTTAAGGACGACTTCTCGA 378
||||||||||||||||| ||||| ||||
Sbjct 184 GTTCGGTTGCTTAAGGATGACTTTTCGA 211
> Ahg489241 jgi|Araly1|489241|fgenesh2_kg.6__2375__AT5G23800.1
Length=1659
Score = 761 bits (412), Expect = 0.0
Identities = 622/721 (86%), Gaps = 24/721 (3%)
Strand=Plus/Plus
Query 1181 AGAGGCTGGAACTCAAAGAAAGGCACTCTCCAAGAAGACACTTCCAAGGAATCAGAATGG 1240
|||||||| |||||| |||||| || || |||||||||||||| ||||||||||||||||
Sbjct 957 AGAGGCTGAAACTCAGAGAAAGACATTCCCCAAGAAGACACTTTCAAGGAATCAGAATGG 1016
Query 1241 CTCGGGAAACGATTCAACGCTAGAGAATGAAAATAGCGAAGATAACAATCGAAAGAGGAA 1300
|| |||||||||||||| | ||||||||||||| || |||||||||||||||
Sbjct 1017 TTCAGGAAACGATTCAACACGAGAGAATGAAAAT-----AG----CAATCGAAAGAGGAA 1067
Query 1301 AAGAGAAGAAAACCTTGGTTGTGTTGCTAGTGTTGAGCAAGACAAAC-CAAAGGATACAA 1359
|||||||||||||||| ||| |||| ||||||||||| || ||||| ||| |||||| |
Sbjct 1068 AAGAGAAGAAAACCTTTGTTCTGTTTCTAGTGTTGAGGAAAACAAAGTCAA-GGATACTA 1126
Query 1360 CAATGGTTTTACCCTTTGAGAAGAAGTTACGAATTTGGGAGACACTAGAATCAATGGAGG 1419
||| ||||| | ||||||||||||||||| ||||||| ||| ||| || ||||||||||
Sbjct 1127 CAACAGTTTTGCTCTTTGAGAAGAAGTTACCAATTTGGAAGATACTTGATTCAATGGAGG 1186
Query 1420 TGTTTAAAACAGTCCCACAGAGTCCTCATTTCAGCCCATTATTGGTGGAGAGTAGAGAAG 1479
| |||||| |||||||||| |||||||||||||||||||| || ||||| ||||||||
Sbjct 1187 TATTTAAAGCAGTCCCACAAAGTCCTCATTTCAGCCCATT---GGCGGAGATTAGAGAAG 1243
Query 1480 ACTCCCGTGAAATGTCTG-CGGTTGGTATGATGCTTACCTTTTT-TGGTTTACTTGATGA 1537
| ||||||||||||| || |||||||||||||||||||||||| || ||||||||| |
Sbjct 1244 ATTCCCGTGAAATGT-TGGCGGTTGGTATGATGCTTACCTTTTCATG-TTTACTTGAACA 1301
Query 1538 AGTCAAAGCTCTGCAACACAACGATCCCATAAGCTTTTTTATAAGCCTCACTAATTCTTT 1597
||||||||||||||||||| |||| |||||||| ||||||||||| | |||||| ||
Sbjct 1302 AGTCAAAGCTCTGCAACACGACGAGAACATAAGCTCATTTATAAGCCTTAGTAATTCCTT 1361
Query 1598 TGCCGAGTTAGAGAAACACGGGTTCAATGTAAAAGCACCTCAGTCACGGATCAATAAGCT 1657
| |||||||||||| |||||||||||||||| ||| | |||||| |||||||||||| |
Sbjct 1362 TACCGAGTTAGAGACACACGGGTTCAATGTACAAGTAGCTCAGTTGCGGATCAATAAGTT 1421
Query 1658 GTTGTCTCTCAGAGATA-GACAATCAAAGAAAACAG-AGGAACTCAAAGATGCCGAGAAA 1715
|||| |||| |||| || | |||||||||||| | | | |||||||| | |||| |||||
Sbjct 1422 GTTGACTCTTAGAGGTATG-CAATCAAAGAAA-CTGGATGAACTCAATGGTGCCAAGAAA 1479
Query 1716 GTGACCGCAGAGAAAGAGAGCGTAAAAGCTGAGAACAAACGCAAGATTCTTGAGCTGCAA 1775
||||| ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||
Sbjct 1480 GTGACTGCAGATAAAGAGAGCGTAAAGGCTGAGAACGAACGCAAGATTCTCGAGCTGCAG 1539
Query 1776 AGGCTAAATGAAGAGATGGACAAAGAGATAGCTCAAAGTAAGTCATGTGCAGCAAAGATT 1835
||||| ||||| ||||||||||||||||||||||| |||| |||||||| ||||||||||
Sbjct 1540 AGGCTGAATGAGGAGATGGACAAAGAGATAGCTCAGAGTATGTCATGTGAAGCAAAGATT 1599
Query 1836 GTCCAACAGCTCGATGATGTGAAGCTTGAGTTTC-TGGCAACAGCATCAGCTCCATGGTA 1894
||||||||||| |||||| ||||||||||||||| || |||| ||||| |||||||||||
Sbjct 1600 GTCCAACAGCTTGATGATATGAAGCTTGAGTTTCATG-CAACTGCATCGGCTCCATGGTA 1658
Query 1895 A 1895
|
Sbjct 1659 A 1659
Score = 547 bits (296), Expect = 1e-154
Identities = 595/730 (82%), Gaps = 57/730 (8%)
Strand=Plus/Plus
Query 394 AGATAGGCTCCATCGTCGAAGCTGATTATAAAGATGCGTGGGT-CACTGGTTTTGTGGTC 452
|||||||| || ||||||| ||||||||||||| ||||| ||| |||||| |||| |||
Sbjct 257 AGATAGGCACCTTCGTCGACGCTGATTATAAAGGTGCGT-GGTGGACTGGTCTTGTAGTC 315
Query 453 AAAGAGATTGATGTTGGCAAGTGTTT-GGTGTGCTTTGATTCAATACCTGATGTTATTCT 511
|||| |||||||| || ||||| ||| |||||| ||||||||| ||||||| | ||||
Sbjct 316 AAAGTGATTGATGATGACAAGT-TTTGGGTGTGTTTTGATTCACCACCTGATATCATTCA 374
Query 512 GTTTGAGAGAAAGCTTTTGAGGCCTCATCTTCAGTGGCTCGATGATAGTGGATA--TACA 569
|||||||||||||| |||||||||||||||||||||| |||||| || |||| | ||
Sbjct 375 GTTTGAGAGAAAGCATTTGAGGCCTCATCTTCAGTGGGTCGATG--AGAAGATATTTTCA 432
Query 570 TTTTGGGAT-AT-GGTATCGAA-AC--ATTATCGAAAGTTCTTG-AGACGGTTGGCTGAA 623
| | |||| || | ||| || || | | || | |||||||| || |||||| ||||
Sbjct 433 TGGT-GGATCATACG-ATC-AACACGAAAT-TC-AGAGTTCTTGAAG-CGGTTGTCTGAG 486
Query 624 GAGCCTATGTTTAGTCCTGGAACAATGGTGGAAGTGAGTTCTAAGATAAATGAAGGTGAA 683
||||||||||||||||||||||||||||||||| || ||||||||| | | |||||||||
Sbjct 487 GAGCCTATGTTTAGTCCTGGAACAATGGTGGAATTGTGTTCTAAGAGAGACGAAGGTGAA 546
Query 684 GTCGTTTGGGTTCCTTCAATGGTTATTAAAGAGTTTAAAGAGGATGATGAGTATAAATAT 743
|| |||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||
Sbjct 547 GTGGTTTGGGTTCCTGCAATGGTTTTTAAAGAGTTTAAAGAGAATGATGAGTATAGATAT 606
Query 744 ATTGTCAAGGATAAGTCCTTTAGCT-G-CGAGG-GAAAAAAGG-CAAGACCCAACAAAAC 799
||||||||||||| | ||||| | | | | ||| | | | || ||||||||||||||||
Sbjct 607 ATTGTCAAGGATAGG-CCTTT-GATTGGC-AGGAGTTATA-GGACAAGACCCAACAAAAC 662
Query 800 CGTTGATTTGTC-TAGTCTTAGGCCTATACCAG--T---AT-CAG-TTGACGAGTATCAG 851
||||||||| | |||||||||||||||||| | | || | | || | ||||||||
Sbjct 663 GGTTGATTTG-CGTAGTCTTAGGCCTATACC-GCCTCCTATTCGGGTTAAAGAGTATCAA 720
Query 852 TTGGAGGAAAACGTAGAGGTGTTTCTTGATGGTATGGGGTGGCGTCATGGACGAGT-GAT 910
|||||||| || ||||||||| || ||||||||| || |||||||| |||||||| | |
Sbjct 721 TTGGAGGATTACATAGAGGTGTATCATGATGGTATAGGATGGCGTCAAGGACGAGTTG-T 779
Query 911 GGGAAGTCAAG-AGCGAGCGATAGGAA-CACTCTCTCAGAAATGGTATTT-TGTGCGTT- 966
|| || || || || ||| ||| |||| | |||||||||| ||||| | | ||| ||
Sbjct 780 GGAAACTCGAGGAG-GAGTGAT-GGAATCTCTCTCTCAGAGATGGTGTACAT-TGC-TTA 835
Query 967 TGGAATCTACAAAGAAGCAATTAACGTTCAAGCAGTCGGATCTTAGGCCTTTGAAGGTGT 1026
| || ||||||||||||||||||| ||||| | ||||||||||||||||||| |||||
Sbjct 836 TAGAGGCTACAAAGAAGCAATTAACATTCAAAAAATCGGATCTTAGGCCTTTGAGGGTGT 895
Query 1027 GGGAAGATGGCGTTTGGAAGGTGTTGCAGACAAGGGAATTGTCGTTTACTCAGGGATCAG 1086
||||||||||| |||||||| | ||||| ||| ||||| |||||||||||||
Sbjct 896 GGGAAGATGGCCTTTGGAAG-------A--CAAGGAAATCATCGTTAACTCAGGGATCAG 946
Query 1087 GAGATAAGAC 1096
||||||||||
Sbjct 947 GAGATAAGAC 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76218580245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5