BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23790.1 Length=1081 Score E Sequences producing significant alignments: (Bits) Value Ahg894259 jgi|Araly1|894259|Al_scaffold_0006_2255 1382 0.0 Ahg492188 jgi|Araly1|492188|fgenesh2_kg.7__1621__AT4G26250.1 1304 0.0 > Ahg894259 jgi|Araly1|894259|Al_scaffold_0006_2255 Length=1008 Score = 1382 bits (748), Expect = 0.0 Identities = 926/1010 (92%), Gaps = 19/1010 (2%) Strand=Plus/Plus Query 1 ATGACGATGACTGTCGAGAAGAGGATCGAAGCTGACGTTACGGTGAGCCAT-GAAGGTGT 59 ||||||||||| |||||||||||||||||| |||||| | |||||||| | | ||||| Sbjct 10 ATGACGATGACCGTCGAGAAGAGGATCGAAACTGACG-T--GGTGAGCC-TCGGCGGTGT 65 Query 60 GGAACGGGCTTACGTAACTTTCCTCGCCGGAAACAAAGACTACTGGATGCTTGTAGTTGG 119 | || |||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 66 GAAAAGGGCTTACGTCACTTTCCTCGCCGGAAACAAAGACTACTGGATGGGTGTGGTTGG 125 Query 120 TCTAGCCAAAGGTCTTCGTAAAGTGAAATCAGCTTATCCACTCGTTGTGGCGACTCTCCC 179 |||||||||||| |||||||| || |||||||||||||| ||||| |||||||||||||| Sbjct 126 TCTAGCCAAAGGACTTCGTAAGGTAAAATCAGCTTATCCTCTCGTGGTGGCGACTCTCCC 185 Query 180 TGACGTGCCTGAGGAACATCGTCAAATCTTAGTGGATCAGGGATGCATCATCCGTGACAT 239 |||||||||||||||||| ||||||||| | |||| ||| |||||||||||||||||||| Sbjct 186 TGACGTGCCTGAGGAACACCGTCAAATCCTGGTGGCTCAAGGATGCATCATCCGTGACAT 245 Query 240 CGAACCGGTCTATCCTCCGGAGAACACG--ACCGGTTATTCTATGGCTTATTACGTTATC 297 | |||| || ||||||||||| || ||| ||||||||||| |||||||||||||||||| Sbjct 246 CAAACCCGTTTATCCTCCGGA-AA-ACGAAACCGGTTATTCCATGGCTTATTACGTTATC 303 Query 298 AACTACTCCAAACTTCGTATTTGGGAGTTTGTGGAGTATGAGAAGATGATATATCTAGAT 357 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 304 AACTACTCCAAGCTTCGTATTTGGGAGTTTGTGGAGTATGAGAAAATGATATATCTAGAT 363 Query 358 GGAGACATACAAGTGTTTAAG-AACATTGATCATCTTTTCGATACTCCTCGTGGCTACTT 416 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 364 GGAGACATACAAGTGTTT-AGTAACATTGATCATCTTTTCGATACTCCTCGTGGCTACTT 422 Query 417 GTACGCAGTCAAAGACTGCTTTTGTGAGGTGTCTTGGTCCAAAACTCCTCAATACAAGAT 476 |||||| || ||||| |||||||| ||||| |||||||| |||||||||||||||||||| Sbjct 423 GTACGCCGTGAAAGATTGCTTTTGCGAGGTATCTTGGTCTAAAACTCCTCAATACAAGAT 482 Query 477 CGGTTATTGCCAACAGTCACCTGAAAAGGTAACTTGGCCTGTTGAAAGTTTAGGTGCTCC 536 |||||| ||||||||||| ||| |||| || ||||||||||||||||| | |||| || Sbjct 483 CGGTTACTGCCAACAGTCGCCTAAAAAAGTGACTTGGCCTGTTGAAAGCCTCCGTGCGCC 542 Query 537 ACCGCCGGTATATTTCAACGCCGGTATGTTGGTTTTTGGACCAAATCTTGTCACTTACGA 596 |||||||||||||||||| || |||||||||||||||| |||||||||| ||||||| || Sbjct 543 ACCGCCGGTATATTTCAATGCTGGTATGTTGGTTTTTGAACCAAATCTTATCACTTATGA 602 Query 597 GGATCTCCTTCGTGTTGTTCAAATCACCACTCCAACTTATTTTGCCGAGCAGGACTTTCT 656 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | Sbjct 603 GGATCTCCTTCGTGTTGTTCAAATCACTACTCCAACTTATTTTGCCGAACAGGACTTTTT 662 Query 657 GAATATATACTTCAGAGACATTTACAAGCCAATCCCTTCGACCTACAACCTCGTAATGG- 715 |||| | ||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 663 GAATGTGTACTTCAGAGACATTTACAAGCCAATCCCTTCGACCTACAACCTC-CCA-GGC 720 Query 716 -CTATGCTTTGGCGTCATCCC-GAACACATTGACCTTGACCAAATCAGTGTTGTTCACTA 773 |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 721 CCTATGCTTTGGCGTCA-CCCTGAACACATTGACCTTGACCAAATCAGTGTTGTTCACTA 779 Query 774 TTGTGCTAATGGTTCGAAGCCTTGGAAATTCGATGAAGCTGAAGAGCATATGGATCGAGA 833 |||||||||||||||||||| ||||| |||||||| |||||||||||| ||||||||||| Sbjct 780 TTGTGCTAATGGTTCGAAGCTTTGGAGATTCGATGGAGCTGAAGAGCACATGGATCGAGA 839 Query 834 AGACATAAAAATGTTGGTGAAGAAGTGGTGGGAGATTTACGAAGATTCGAGTTTAGACTA 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 AGACATAAAAATGTTGGTGAAGAAGTGGTGGGAGATTTACGAAGATTCGAGTTTAGACTA 899 Query 894 CAAGAATTTCGTCGAGACTGAGTCCAAGCTGAATCCGGTCACTGCAACCTTGGCTTCCAA 953 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 CAAGAATTTTGTCGAGACTGAGTCCAAGCTGAATCCGGTCACTGCAACCTTGGCTTCCAA 959 Query 954 GAAA-CTTGTTGGCGATGTCCTAACAAGCCTTGCCCCTTCCGCCGCATAA 1002 | || || ||||| |||| |||||| ||||||||||| || ||||||||| Sbjct 960 GGAATCT-GTTGGTGATGCCCTAACGAGCCTTGCCCCCTCTGCCGCATAA 1008 > Ahg492188 jgi|Araly1|492188|fgenesh2_kg.7__1621__AT4G26250.1 Length=1019 Score = 1304 bits (706), Expect = 0.0 Identities = 914/1014 (90%), Gaps = 15/1014 (1%) Strand=Plus/Plus Query 14 TCGAGAAGAGGATCGAAGCTGACGTTACGGTGAGCCATGAAGGTG-TGGAACGGGCTTAC 72 ||||||||| |||||||| |||||| | | |||||| ||| |||| | || | ||||| Sbjct 14 TCGAGAAGAAGATCGAAGATGACGTGATGATGAGCCCTGATGGTGAT-AAAAGAGCTTAT 72 Query 73 GTAACTTTCCTCGCCGGAAACAAAGACTACTGGATGCTTGTAGTTGGTCTAGCCAAAGGT 132 || |||||||| ||||| |||||||||||||||||| ||| ||||||||||||||||| Sbjct 73 GTCACTTTCCTTGCCGGGAACAAAGACTACTGGATGGGTGTGGTTGGTCTAGCCAAAGGA 132 Query 133 CTTCGTAAAGTGAAATCAGCTTATCCACTCGTTGTGGCGACTCTCCCTGACGTGCCTGAG 192 || |||||||||||||| |||||||| || || ||||| | |||||| ||||||||||| Sbjct 133 CTCCGTAAAGTGAAATCTGCTTATCCTCTTGTGGTGGCTATTCTCCCGGACGTGCCTGAA 192 Query 193 GAACATCGTCAAATCTTAGTGGATCAGGGATGCATCATCCGTGACATCGAACCGGTCTAT 252 ||||| ||||||||||| || | ||||||||||||||||||||| |||||||| |||||| Sbjct 193 GAACACCGTCAAATCTTGGTCGCTCAGGGATGCATCATCCGTGAGATCGAACCAGTCTAT 252 Query 253 CCTCCGGAGAACACGACCGGTTATTCTATGGCTTATTACGTTATCAACTACTCCAAACTT 312 || || || |||| ||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 253 CCCCCAGAAAACAAAACCGGTTATTCTATGGCTTATTATGTTATCAACTACTCCAAGCTT 312 Query 313 CGTATTTGGGAGTTTGTGGAGTATGAGAAGATGATATATCTAGATGGAGACATACAAGTG 372 |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| Sbjct 313 CGTATTTGGGAGTTTGTGGAATATGAGAAGATGATCTATCTAGATGGAGACATTCAAGTA 372 Query 373 TTTAAG-AACATTGATCATCTTTTCGATACTCCTCGTGGCTACTTGTACGCAGTCAAAGA 431 ||| || || || ||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 373 TTT-AGTAATATCGATCATCTTTTTGATACTCCTCGTGGCTATTTGTACGCTGTCAAAGA 431 Query 432 CTGCTTTTGTGAGGTGTCTTGGTCCAAAACTCCTCAATACAAGATCGGTTATTGCCAACA 491 || ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 432 TTGTTTTTGCGAGGTTTCTTGGTCCAAAACTCCTCAATACAAGATCGGTTACTGCCAACA 491 Query 492 GTCACCTGAAAAGGTAACTTGGCCTGTTGAAAG-TTTAGGTGCTCCACCGCCGGTATATT 550 || ||||||||||| ||||||||||| ||||| || ||| ||||||||||||| |||| Sbjct 492 GTGTCCTGAAAAGGTGACTTGGCCTGTCGAAAGCCTT-GGTTCTCCACCGCCGGTTTATT 550 Query 551 TCAACGCCGGTATGTTGGTTTTTGGACCAAATCTTGTCACTTACGAGGATCTCCTTCGTG 610 |||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||||| Sbjct 551 TCAACGCCGGTATGTTGGTTTTTGAACCACATCTTGACACTTACGAGGATCTTCTTCGTG 610 Query 611 TTGTTCAAATCACCACTCCAACTTATTTTGCCGAGCAGGACTTTCTGAAT-ATATACTTC 669 ||||||||||||||||||||||||| |||||||| ||||| ||||||||| || ||||| Sbjct 611 TTGTTCAAATCACCACTCCAACTTACTTTGCCGAACAGGATTTTCTGAATGAT-TACTTT 669 Query 670 AGAGACATTTACAAGCCAATCCCTTCGACCTACAACCTCGTAATGGCTATGCTTTGGCGT 729 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 670 AGAGACATTTACAAGCCAATCCCTTCGACCTATAACCTCGTAATGGCTATGCTTTGGCGT 729 Query 730 CATCCCGAACACATTGACCTTGACCAAATCAGTGTTGTTCACTATTGTGCTAATGGTTCG 789 ||||| |||||| |||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 730 CATCCTGAACACGTTGACCTTGACCAAATCAGTGTTGTTCATTACTGTGCTAATGGTTCG 789 Query 790 AAGCCTTGGAAATTCGATGAAGCTGAAGAGCATATGGATCGAGAAGACATAAAAATGTTG 849 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 790 AAGCCTTGGAAATTCGATGAAGCTGAAGAGCATATGGATCGTGAAGACATAAAAATGTTG 849 Query 850 GTGAAGAAGTGGTGGGAGATTTACGAAGATTCGAGTTTAGACTACAAGAA-TTTCGTCGA 908 |||||||| |||||||| |||||||||||| ||||||||||||||||||| ||| ||||| Sbjct 850 GTGAAGAAATGGTGGGACATTTACGAAGATGCGAGTTTAGACTACAAGAACTTT-GTCGA 908 Query 909 GACTGAGTCCAAGCTGAA-TCCGGTCACTGCAACCTTGGCTTCCAAGAAA-CTTGTTGGC 966 ||||||| ||||||| || |||| |||| |||||||||||||||||| || || |||||| Sbjct 909 GACTGAGCCCAAGCT-AAGTCCGATCACAGCAACCTTGGCTTCCAAGGAATCT-GTTGGC 966 Query 967 GATGTCCTAACAAGCCTTGCCCCTTCCGCCGCATAACCAATCCTTTTATGTGGA 1020 |||||||| || |||||||||||||| ||||||||||||||||||| ||||||| Sbjct 967 GATGTCCTTACGAGCCTTGCCCCTTCTGCCGCATAACCAATCCTTT-ATGTGGA 1019 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40257800352 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5