BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23790.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894259 jgi|Araly1|894259|Al_scaffold_0006_2255 1382 0.0
Ahg492188 jgi|Araly1|492188|fgenesh2_kg.7__1621__AT4G26250.1 1304 0.0
> Ahg894259 jgi|Araly1|894259|Al_scaffold_0006_2255
Length=1008
Score = 1382 bits (748), Expect = 0.0
Identities = 926/1010 (92%), Gaps = 19/1010 (2%)
Strand=Plus/Plus
Query 1 ATGACGATGACTGTCGAGAAGAGGATCGAAGCTGACGTTACGGTGAGCCAT-GAAGGTGT 59
||||||||||| |||||||||||||||||| |||||| | |||||||| | | |||||
Sbjct 10 ATGACGATGACCGTCGAGAAGAGGATCGAAACTGACG-T--GGTGAGCC-TCGGCGGTGT 65
Query 60 GGAACGGGCTTACGTAACTTTCCTCGCCGGAAACAAAGACTACTGGATGCTTGTAGTTGG 119
| || |||||||||| ||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 66 GAAAAGGGCTTACGTCACTTTCCTCGCCGGAAACAAAGACTACTGGATGGGTGTGGTTGG 125
Query 120 TCTAGCCAAAGGTCTTCGTAAAGTGAAATCAGCTTATCCACTCGTTGTGGCGACTCTCCC 179
|||||||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct 126 TCTAGCCAAAGGACTTCGTAAGGTAAAATCAGCTTATCCTCTCGTGGTGGCGACTCTCCC 185
Query 180 TGACGTGCCTGAGGAACATCGTCAAATCTTAGTGGATCAGGGATGCATCATCCGTGACAT 239
|||||||||||||||||| ||||||||| | |||| ||| ||||||||||||||||||||
Sbjct 186 TGACGTGCCTGAGGAACACCGTCAAATCCTGGTGGCTCAAGGATGCATCATCCGTGACAT 245
Query 240 CGAACCGGTCTATCCTCCGGAGAACACG--ACCGGTTATTCTATGGCTTATTACGTTATC 297
| |||| || ||||||||||| || ||| ||||||||||| ||||||||||||||||||
Sbjct 246 CAAACCCGTTTATCCTCCGGA-AA-ACGAAACCGGTTATTCCATGGCTTATTACGTTATC 303
Query 298 AACTACTCCAAACTTCGTATTTGGGAGTTTGTGGAGTATGAGAAGATGATATATCTAGAT 357
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 304 AACTACTCCAAGCTTCGTATTTGGGAGTTTGTGGAGTATGAGAAAATGATATATCTAGAT 363
Query 358 GGAGACATACAAGTGTTTAAG-AACATTGATCATCTTTTCGATACTCCTCGTGGCTACTT 416
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 364 GGAGACATACAAGTGTTT-AGTAACATTGATCATCTTTTCGATACTCCTCGTGGCTACTT 422
Query 417 GTACGCAGTCAAAGACTGCTTTTGTGAGGTGTCTTGGTCCAAAACTCCTCAATACAAGAT 476
|||||| || ||||| |||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 423 GTACGCCGTGAAAGATTGCTTTTGCGAGGTATCTTGGTCTAAAACTCCTCAATACAAGAT 482
Query 477 CGGTTATTGCCAACAGTCACCTGAAAAGGTAACTTGGCCTGTTGAAAGTTTAGGTGCTCC 536
|||||| ||||||||||| ||| |||| || ||||||||||||||||| | |||| ||
Sbjct 483 CGGTTACTGCCAACAGTCGCCTAAAAAAGTGACTTGGCCTGTTGAAAGCCTCCGTGCGCC 542
Query 537 ACCGCCGGTATATTTCAACGCCGGTATGTTGGTTTTTGGACCAAATCTTGTCACTTACGA 596
|||||||||||||||||| || |||||||||||||||| |||||||||| ||||||| ||
Sbjct 543 ACCGCCGGTATATTTCAATGCTGGTATGTTGGTTTTTGAACCAAATCTTATCACTTATGA 602
Query 597 GGATCTCCTTCGTGTTGTTCAAATCACCACTCCAACTTATTTTGCCGAGCAGGACTTTCT 656
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 603 GGATCTCCTTCGTGTTGTTCAAATCACTACTCCAACTTATTTTGCCGAACAGGACTTTTT 662
Query 657 GAATATATACTTCAGAGACATTTACAAGCCAATCCCTTCGACCTACAACCTCGTAATGG- 715
|||| | ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 663 GAATGTGTACTTCAGAGACATTTACAAGCCAATCCCTTCGACCTACAACCTC-CCA-GGC 720
Query 716 -CTATGCTTTGGCGTCATCCC-GAACACATTGACCTTGACCAAATCAGTGTTGTTCACTA 773
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCTATGCTTTGGCGTCA-CCCTGAACACATTGACCTTGACCAAATCAGTGTTGTTCACTA 779
Query 774 TTGTGCTAATGGTTCGAAGCCTTGGAAATTCGATGAAGCTGAAGAGCATATGGATCGAGA 833
|||||||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||
Sbjct 780 TTGTGCTAATGGTTCGAAGCTTTGGAGATTCGATGGAGCTGAAGAGCACATGGATCGAGA 839
Query 834 AGACATAAAAATGTTGGTGAAGAAGTGGTGGGAGATTTACGAAGATTCGAGTTTAGACTA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGACATAAAAATGTTGGTGAAGAAGTGGTGGGAGATTTACGAAGATTCGAGTTTAGACTA 899
Query 894 CAAGAATTTCGTCGAGACTGAGTCCAAGCTGAATCCGGTCACTGCAACCTTGGCTTCCAA 953
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CAAGAATTTTGTCGAGACTGAGTCCAAGCTGAATCCGGTCACTGCAACCTTGGCTTCCAA 959
Query 954 GAAA-CTTGTTGGCGATGTCCTAACAAGCCTTGCCCCTTCCGCCGCATAA 1002
| || || ||||| |||| |||||| ||||||||||| || |||||||||
Sbjct 960 GGAATCT-GTTGGTGATGCCCTAACGAGCCTTGCCCCCTCTGCCGCATAA 1008
> Ahg492188 jgi|Araly1|492188|fgenesh2_kg.7__1621__AT4G26250.1
Length=1019
Score = 1304 bits (706), Expect = 0.0
Identities = 914/1014 (90%), Gaps = 15/1014 (1%)
Strand=Plus/Plus
Query 14 TCGAGAAGAGGATCGAAGCTGACGTTACGGTGAGCCATGAAGGTG-TGGAACGGGCTTAC 72
||||||||| |||||||| |||||| | | |||||| ||| |||| | || | |||||
Sbjct 14 TCGAGAAGAAGATCGAAGATGACGTGATGATGAGCCCTGATGGTGAT-AAAAGAGCTTAT 72
Query 73 GTAACTTTCCTCGCCGGAAACAAAGACTACTGGATGCTTGTAGTTGGTCTAGCCAAAGGT 132
|| |||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct 73 GTCACTTTCCTTGCCGGGAACAAAGACTACTGGATGGGTGTGGTTGGTCTAGCCAAAGGA 132
Query 133 CTTCGTAAAGTGAAATCAGCTTATCCACTCGTTGTGGCGACTCTCCCTGACGTGCCTGAG 192
|| |||||||||||||| |||||||| || || ||||| | |||||| |||||||||||
Sbjct 133 CTCCGTAAAGTGAAATCTGCTTATCCTCTTGTGGTGGCTATTCTCCCGGACGTGCCTGAA 192
Query 193 GAACATCGTCAAATCTTAGTGGATCAGGGATGCATCATCCGTGACATCGAACCGGTCTAT 252
||||| ||||||||||| || | ||||||||||||||||||||| |||||||| ||||||
Sbjct 193 GAACACCGTCAAATCTTGGTCGCTCAGGGATGCATCATCCGTGAGATCGAACCAGTCTAT 252
Query 253 CCTCCGGAGAACACGACCGGTTATTCTATGGCTTATTACGTTATCAACTACTCCAAACTT 312
|| || || |||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 253 CCCCCAGAAAACAAAACCGGTTATTCTATGGCTTATTATGTTATCAACTACTCCAAGCTT 312
Query 313 CGTATTTGGGAGTTTGTGGAGTATGAGAAGATGATATATCTAGATGGAGACATACAAGTG 372
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 313 CGTATTTGGGAGTTTGTGGAATATGAGAAGATGATCTATCTAGATGGAGACATTCAAGTA 372
Query 373 TTTAAG-AACATTGATCATCTTTTCGATACTCCTCGTGGCTACTTGTACGCAGTCAAAGA 431
||| || || || ||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 373 TTT-AGTAATATCGATCATCTTTTTGATACTCCTCGTGGCTATTTGTACGCTGTCAAAGA 431
Query 432 CTGCTTTTGTGAGGTGTCTTGGTCCAAAACTCCTCAATACAAGATCGGTTATTGCCAACA 491
|| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 432 TTGTTTTTGCGAGGTTTCTTGGTCCAAAACTCCTCAATACAAGATCGGTTACTGCCAACA 491
Query 492 GTCACCTGAAAAGGTAACTTGGCCTGTTGAAAG-TTTAGGTGCTCCACCGCCGGTATATT 550
|| ||||||||||| ||||||||||| ||||| || ||| ||||||||||||| ||||
Sbjct 492 GTGTCCTGAAAAGGTGACTTGGCCTGTCGAAAGCCTT-GGTTCTCCACCGCCGGTTTATT 550
Query 551 TCAACGCCGGTATGTTGGTTTTTGGACCAAATCTTGTCACTTACGAGGATCTCCTTCGTG 610
|||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||
Sbjct 551 TCAACGCCGGTATGTTGGTTTTTGAACCACATCTTGACACTTACGAGGATCTTCTTCGTG 610
Query 611 TTGTTCAAATCACCACTCCAACTTATTTTGCCGAGCAGGACTTTCTGAAT-ATATACTTC 669
||||||||||||||||||||||||| |||||||| ||||| ||||||||| || |||||
Sbjct 611 TTGTTCAAATCACCACTCCAACTTACTTTGCCGAACAGGATTTTCTGAATGAT-TACTTT 669
Query 670 AGAGACATTTACAAGCCAATCCCTTCGACCTACAACCTCGTAATGGCTATGCTTTGGCGT 729
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 670 AGAGACATTTACAAGCCAATCCCTTCGACCTATAACCTCGTAATGGCTATGCTTTGGCGT 729
Query 730 CATCCCGAACACATTGACCTTGACCAAATCAGTGTTGTTCACTATTGTGCTAATGGTTCG 789
||||| |||||| |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 730 CATCCTGAACACGTTGACCTTGACCAAATCAGTGTTGTTCATTACTGTGCTAATGGTTCG 789
Query 790 AAGCCTTGGAAATTCGATGAAGCTGAAGAGCATATGGATCGAGAAGACATAAAAATGTTG 849
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 790 AAGCCTTGGAAATTCGATGAAGCTGAAGAGCATATGGATCGTGAAGACATAAAAATGTTG 849
Query 850 GTGAAGAAGTGGTGGGAGATTTACGAAGATTCGAGTTTAGACTACAAGAA-TTTCGTCGA 908
|||||||| |||||||| |||||||||||| ||||||||||||||||||| ||| |||||
Sbjct 850 GTGAAGAAATGGTGGGACATTTACGAAGATGCGAGTTTAGACTACAAGAACTTT-GTCGA 908
Query 909 GACTGAGTCCAAGCTGAA-TCCGGTCACTGCAACCTTGGCTTCCAAGAAA-CTTGTTGGC 966
||||||| ||||||| || |||| |||| |||||||||||||||||| || || ||||||
Sbjct 909 GACTGAGCCCAAGCT-AAGTCCGATCACAGCAACCTTGGCTTCCAAGGAATCT-GTTGGC 966
Query 967 GATGTCCTAACAAGCCTTGCCCCTTCCGCCGCATAACCAATCCTTTTATGTGGA 1020
|||||||| || |||||||||||||| ||||||||||||||||||| |||||||
Sbjct 967 GATGTCCTTACGAGCCTTGCCCCTTCTGCCGCATAACCAATCCTTT-ATGTGGA 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5