BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23800.1
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489241 jgi|Araly1|489241|fgenesh2_kg.6__2375__AT5G23800.1 2272 0.0
Ahg894258 jgi|Araly1|894258|Al_scaffold_0006_2254 747 0.0
> Ahg489241 jgi|Araly1|489241|fgenesh2_kg.6__2375__AT5G23800.1
Length=1659
Score = 2272 bits (1230), Expect = 0.0
Identities = 1527/1665 (92%), Gaps = 42/1665 (3%)
Strand=Plus/Plus
Query 1 ATGGGGAGGCAGGTTCCGAGTGAAAGTTTATCTCTGAGCGAAGGTTGTGAAGTCGAAATC 60
|||| ||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1 ATGGAGAGGCAGATTCCGAGTGAAAGTTTATCTCTGAGTGAAGGTTGTGAAATCGAAATC 60
Query 61 TCTTACAAAAACAATGGCAATGAAAGCGTTTGGTACAAAGCCATTCTCGAAGCAAAA-C- 118
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 61 TCTTACAAAAACAATAGCAATGAAAGCGTTTGGTACAAAGCCATTATCGAAGCAAAACCG 120
Query 119 CC----AATTCTATATTCAAAGAAGAACTCTCTGTTCGTTTGCTTAAGGATGAC-TTCTC 173
|| ||||||| |||| | ||||||||| |||||| ||||||||||| ||| || ||
Sbjct 121 CCAAAGAATTCTACATTC--A-AAGAACTCTGTGTTCGGTTGCTTAAGGAAGACGTT-TC 176
Query 174 GACTCCTCTTAACGAACTCAGACACAAAGTCTTGATTAGACCCATTCCGCCAACAAATGT 233
|||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| |
Sbjct 177 GACTCCTCTTAACGAACTCAGAGACAAAGTCTTGATTCGACCCATTCCGCCAAAAAACAT 236
Query 234 ACAAGCTTGCATCGATATCGAGATAGGCACCTTCGTCGACGCTGACTACAAAGATGCGTG 293
|||| |||||||||||| |||||||||||||||||||||||||| || |||| ||||||
Sbjct 237 GCAAGATTGCATCGATATTGAGATAGGCACCTTCGTCGACGCTGATTATAAAGGTGCGTG 296
Query 294 GTGGGCTGGTTTTGTTGTCAAAGTGATTGATGATGACAAGTTTTGGGTTTGTTTTGATTC 353
|||| ||||| |||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 297 GTGGACTGGTCTTGTAGTCAAAGTGATTGATGATGACAAGTTTTGGGTGTGTTTTGATTC 356
Query 354 ACCACCTGATATCATTCAGTTTGATAGAAACCATTTGAGGCCTAC-TCTTGAATGGGTCG 412
|||||||||||||||||||||||| ||||| |||||||||||| | |||| | |||||||
Sbjct 357 ACCACCTGATATCATTCAGTTTGAGAGAAAGCATTTGAGGCCT-CATCTTCAGTGGGTCG 415
Query 413 ATGAGAAGAT-TTATTCTTGGTGGATCATTGGATCAACACGAAATTCAGAGTTCTTGAAG 471
|||||||||| || ||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 416 ATGAGAAGATATT-TTCATGGTGGATCATACGATCAACACGAAATTCAGAGTTCTTGAAG 474
Query 472 CGGTTGGCTGAGGAGCCTATGTTTAGTCCTGGAACAATTGTGGAATTGTGCTCTAAGAGA 531
|||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 475 CGGTTGTCTGAGGAGCCTATGTTTAGTCCTGGAACAATGGTGGAATTGTGTTCTAAGAGA 534
Query 532 GATGAAGGGGAAGTCGTTTGGGTTCCTGCATTGGTTTATAAAGAGTTTAAAGAGAATGAT 591
|| ||||| ||||| ||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 535 GACGAAGGTGAAGTGGTTTGGGTTCCTGCAATGGTTTTTAAAGAGTTTAAAGAGAATGAT 594
Query 592 GAGTATAGATATATTGTCAAGGATAAGCCTTTGATCGGAAGGAGTTATAAGTCAAGACCC 651
||||||||||||||||||||||||| ||||||||| || |||||||||| | ||||||||
Sbjct 595 GAGTATAGATATATTGTCAAGGATAGGCCTTTGATTGGCAGGAGTTATAGGACAAGACCC 654
Query 652 AGCAAAACTGTGGACTTGCGTAGTCTTAGGCCTATACCGCCTCCTATTCGGGTTAAAGAG 711
| |||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AACAAAACGGTTGATTTGCGTAGTCTTAGGCCTATACCGCCTCCTATTCGGGTTAAAGAG 714
Query 712 TATCGATTGGATGAGTACATTGAGGTGTATCATGATGGTATAGGATGGCGTCAAGGACGA 771
|||| |||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 715 TATCAATTGGAGGATTACATAGAGGTGTATCATGATGGTATAGGATGGCGTCAAGGACGA 774
Query 772 GTTGTGAAAAGT-GAAGGAGGAGTGATGGGATCTCTCTTTCAGA-ATTGGTGTACATTGC 829
|||||| ||| | | |||||||||||||| |||||||| ||||| | |||||||||||||
Sbjct 775 GTTGTGGAAACTCG-AGGAGGAGTGATGGAATCTCTCTCTCAGAGA-TGGTGTACATTGC 832
Query 830 TTTTAGAGGCTACAAAGAAGCAATTAATGTTCAAACAATCGGATCTTAGGCCTTTGAGGG 889
|| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 833 TTATAGAGGCTACAAAGAAGCAATTAACATTCAAAAAATCGGATCTTAGGCCTTTGAGGG 892
Query 890 TGTGGGAAGATGGCGTTTGGAAGACAAGGGAATCATCGTTAACTCAGGGGTCAGGAGATA 949
|||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 893 TGTGGGAAGATGGCCTTTGGAAGACAAGGAAATCATCGTTAACTCAGGGATCAGGAGATA 952
Query 950 AGACAGAGGTTGAAACTCAAAGAAAGACATTCCCCAAGAAGACACTTCCAAGGAATCAGA 1009
||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 953 AGACAGAGGCTGAAACTCAGAGAAAGACATTCCCCAAGAAGACACTTTCAAGGAATCAGA 1012
Query 1010 ATGGTTCAGGAAACGATTCAACACTAGAGAATGAAAATAGCAATCGAAAGAGGAAAAGAG 1069
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1013 ATGGTTCAGGAAACGATTCAACACGAGAGAATGAAAATAGCAATCGAAAGAGGAAAAGAG 1072
Query 1070 AAGAAAACCTTTGTTCTGGTTCTAGTGTTGAGGAAA-C-----CAA-----C-A------ 1111
|||||||||||||||||| ||||||||||||||||| | ||| | |
Sbjct 1073 AAGAAAACCTTTGTTCTGTTTCTAGTGTTGAGGAAAACAAAGTCAAGGATACTACAACAG 1132
Query 1112 TT---CTCTTTGAGAAGAAGTTACCAGTTTGGAAGATACTTGAATCAATGGAGGTATTTA 1168
|| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1133 TTTTGCTCTTTGAGAAGAAGTTACCAATTTGGAAGATACTTGATTCAATGGAGGTATTTA 1192
Query 1169 A-GACAATCCCACAAAGTCCTCATTTCCGCCCCTTGGCAGAGATTAGAGAAGATTCCCGT 1227
| | || |||||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 1193 AAG-CAGTCCCACAAAGTCCTCATTTCAGCCCATTGGCGGAGATTAGAGAAGATTCCCGT 1251
Query 1228 GAAATGTTGGCGGTTGGTATGATGCTTACCTTTTCATGTTTACTTGAGCAAGTCAAAGCT 1287
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1252 GAAATGTTGGCGGTTGGTATGATGCTTACCTTTTCATGTTTACTTGAACAAGTCAAAGCT 1311
Query 1288 CTGCAACACGACGAGGCCAGAAGCTCATTTATAAGCCTCAGTAATTCCTTTGCCGAGTTA 1347
||||||||||||||| || |||||||||||||||||| |||||||||||| ||||||||
Sbjct 1312 CTGCAACACGACGAGAACATAAGCTCATTTATAAGCCTTAGTAATTCCTTTACCGAGTTA 1371
Query 1348 GAGAAACACGGGTTCAATGCACAAGTAGCTCAGTTGCGGATCAATAAGTTGTTGACTCTT 1407
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GAGACACACGGGTTCAATGTACAAGTAGCTCAGTTGCGGATCAATAAGTTGTTGACTCTT 1431
Query 1408 AGAGGTATGCAATCAAGGAAAATGGATGAACTCAAAGGCGCCAAGAAAGTGACTGCAGAG 1467
|||||||||||||||| |||| ||||||||||||| || ||||||||||||||||||||
Sbjct 1432 AGAGGTATGCAATCAAAGAAACTGGATGAACTCAATGGTGCCAAGAAAGTGACTGCAGAT 1491
Query 1468 AAAGAGAGCGTAAAGGTTGAGAACGAGCGCAAGATTCTCGAGCTGCAGAGGCTGAATGAG 1527
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1492 AAAGAGAGCGTAAAGGCTGAGAACGAACGCAAGATTCTCGAGCTGCAGAGGCTGAATGAG 1551
Query 1528 GAGATGGCCAAAGAGATAGCTCAGAGTATGTCATGTGAAGGAAAGATTCTCCAACAGCTT 1587
||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1552 GAGATGGACAAAGAGATAGCTCAGAGTATGTCATGTGAAGCAAAGATTGTCCAACAGCTT 1611
Query 1588 GATAATATGAAGCTTGAGTTTCAGGCAACTGCATCAGCTCCATGG 1632
||| ||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1612 GATGATATGAAGCTTGAGTTTCATGCAACTGCATCGGCTCCATGG 1656
> Ahg894258 jgi|Araly1|894258|Al_scaffold_0006_2254
Length=1719
Score = 747 bits (404), Expect = 0.0
Identities = 622/720 (86%), Gaps = 43/720 (6%)
Strand=Plus/Plus
Query 949 AAGACAGAGGTTGAAACTCAAAGAAAGACATTCCCCAAGAAGACACTTCCAAGGAATCAG 1008
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 AAGA-AGAGGCTGAAACTCAAAGAAAGACATTCCCCAAGAAGACACTTCCAAGGAATCAG 1062
Query 1009 AATGGTTCAGGAAACGATTCAACACTAGAGAATG-AAA-AT-----A-G-CAATCGAAAG 1059
||||||||||||||||||||||||| |||||||| ||| || | | |||||||||
Sbjct 1063 AATGGTTCAGGAAACGATTCAACACGAGAGAATGAAAATATCGAAGATGTTAATCGAAAG 1122
Query 1060 AGGAAAAGAGAAGAAAACCTTTGTTCTGGTTCTAGTGTTGAGGAA-AC----C-----A- 1108
|||||||||||||||||||||||||||| | |||||| ||||||| || | |
Sbjct 1123 AGGAAAAGAGAAGAAAACCTTTGTTCTGATGCTAGTGCTGAGGAAGACAAAGCAAAGGAT 1182
Query 1109 AC----A-----TT-CTCTTTGAGAAGAAGTTACCAGTTTGGAAGATACTTGAATCAATG 1158
|| | || | ||||||||||||||||| | ||||||||| ||| |||||||||
Sbjct 1183 ACAAGAATGGTTTTGCCCTTTGAGAAGAAGTTACGAATTTGGAAGACACTAGAATCAATG 1242
Query 1159 GAGGTATTTAAGACAATCCCACAAAGTCCTCATTTCCGCCCCTTGGCAGAGATTAGAGAA 1218
||||| ||||| ||| |||||||||||||||||||| |||| |||| |||| |||||||
Sbjct 1243 GAGGTGTTTAAAACAGTCCCACAAAGTCCTCATTTCAGCCCATTGGTGGAGAGTAGAGAA 1302
Query 1219 GATTCCCGTGAAATGT-TGGCGGTTGGTATGATGCTTACCTTTTCAT-GTTTACTTGA-G 1275
|||||||||||||||| | |||||||||||||||||||||||||| | |||||||||| |
Sbjct 1303 GATTCCCGTGAAATGTCT-GCGGTTGGTATGATGCTTACCTTTTC-TGGTTTACTTGATG 1360
Query 1276 CAAGTCAAAGCTCTGCAACACGACGAGGCCAGAAGCTCATT-TATAAGCCTCAGTAATTC 1334
|||||||||||||||||||||| || ||| ||||||||| || ||||| | | ||||
Sbjct 1361 -AAGTCAAAGCTCTGCAACACGATGATCCCATAAGCTCATTCGAT-AGCCTTAATGATTC 1418
Query 1335 CTTTGCCGAGTTAGAGAAACACGGGTTCAATGCACAAGTAGCTCAGTTGCGGATCAATAA 1394
|||| || ||||||||||||||||| |||||| | ||||| ||||||| ||| |||||||
Sbjct 1419 CTTTTCCAAGTTAGAGAAACACGGGCTCAATGTAAAAGTACCTCAGTTACGGCTCAATAA 1478
Query 1395 GTTGTTGACTCTTAGAGGTATG-CAATCAAGGAAAATGGATGAACTCAAAGGCGCCAAGA 1453
| ||||| |||| |||| || | ||||||| ||||| || ||||||||||| ||| |||
Sbjct 1479 GCTGTTGTCTCTCAGAGATA-GACAATCAATGAAAACAGAGGAACTCAAAGGTGCCGAGA 1537
Query 1454 AAGTGACTGCAGAGAAAGAGAGCGTAAAGGTTGAGAACGAGCGCAAGATTCTCGAGCTGC 1513
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1538 AAGTGACGGCAGAGAAAGAGAGCGTAAAGGCTGAGAACGAGCGCAAGATTCTCGAGCTGC 1597
Query 1514 AGAGGCTGAATGAGGAGATGGCCAAAGAGATAGCTCAGAGTATGTCATGTG-AAGGAAAG 1572
||||||||||||||||||||| ||||||||||||||| |||| |||||||| || ||||
Sbjct 1598 AGAGGCTGAATGAGGAGATGGACAAAGAGATAGCTCAAAGTAAGTCATGTGCAAC-AAAG 1656
Query 1573 ATTCTCCAACAGCTTGATAATATGAAGCTTGAGTTTCAGGCAACTGCATCAGCTCCATGG 1632
||| |||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 1657 ATTGTCCAACAGCTTGATGATGTGAAGCTTGAGTTTAAGGCAACTGCATCAGCTCCATGG 1716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62201370085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5