BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23810.1
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489244 jgi|Araly1|489244|fgenesh2_kg.6__2378__AT5G23810.1 2170 0.0
> Ahg489244 jgi|Araly1|489244|fgenesh2_kg.6__2378__AT5G23810.1
Length=1418
Score = 2170 bits (1175), Expect = 0.0
Identities = 1341/1422 (94%), Gaps = 8/1422 (1%)
Strand=Plus/Plus
Query 79 AAAAAATGGACATTAAAGAAGATGACGAGTCTCGAGTTATAACACCAACCGAGCTTCAAC 138
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AAAAAATGGACATTAAAGAAAATGACGAGTCTCGAGTTATAACACCAACCGAACTTCAAC 60
Query 139 TTCATGATTCAGTTACTGCAAGAACAGGAACGTTATGGACGGCGGTGGCACATATAATAA 198
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTCATGATTCAGTTTCTGCAAGAACAGGAACGTTATGGACGGCGGTGACACATATAATAA 120
Query 199 CAGGAGTGATAGGAGCTGGAGTGTTGTCGTTGGCTTGGGCCACGGCGGAGCTCGGCTGGA 258
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CAGGAGTGATAGGAGCTGGAGTGTTGTCGTTGGCTTGGGCCACGGCGAAGCTCGGCTGGA 180
Query 259 TCGCTGGTCCGGCCGCCCTTATAGCCTTCGCCGGGGTCACACTTCTCTCTGCTTTTCTTC 318
|||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 181 TCGCTGGTCCAGCCGCTCTTATAGCCTTCGCCGGAGTTACACTTCTCTCTGCTTTTCTTC 240
Query 319 TTTCCGATTGCTACCGTTTCCCTGATCCTAACAACGGTCCCCTCCGACTCAATTCTTACT 378
|||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 241 TTTCGGATTGCTACCGTTTCCCTGATCCTGACAACGGTCCCCTCCGACTTAATTCTTACT 300
Query 379 CTCAAGCCGTTAAATTGTATTTAGGGAAGAAGAATGAAATTGTATGTGGAGTCGTTGTAT 438
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 301 CTCAAGCCGTTAAATTGTATTTAGGGAAGAAGAATGAGATCGTATGTGGGGTCGTTGTAT 360
Query 439 ACATTTCCCTTTTTGGTTGTGGCATTGCTTATACCATTGTTATAGCTACATGCAGTAGAG 498
|||||||||||||||||||||| |||||||||||||| |||| ||| ||||||| |||||
Sbjct 361 ACATTTCCCTTTTTGGTTGTGGTATTGCTTATACCATAGTTACAGCGACATGCATTAGAG 420
Query 499 CAATTATGAAATCGAATTGTTATCATAGA-AATGGACACAATGCAACATGTTCATATGGA 557
||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||
Sbjct 421 CAATTATGAAATCGAATTGTTATCATAGAGAA-GGACACAATGCAACATGTTCTTTTGGA 479
Query 558 GACAACAACAACTACTTCATGGTTTTGTTTGGTTTGACTCAGATATTTATGTCACAAATA 617
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 480 GACAACAACAACTACTTCATGCTTTTGTTTGGTTTGACTCAGATCTTTATGTCACAAATA 539
Query 618 CCTAATTTCCACAACATGGTATGGCTCTCTCTTGTCGCCGCTATTATGTCTTTTACTTAC 677
|||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||||||
Sbjct 540 CCTAATTTCCACAACATGCTATGGCTCTCTCTTGTTGCCGCGATTATGTCCTTTACTTAC 599
Query 678 TCGTTCATTGGCATCGGCCTCGCCCTTGGCAAAATCATAGAGAATCGAAAAATTGAGGGA 737
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCATTCATTGGCATGGGCCTCGCCCTTGGCAAAATCATAGAGAATCGAAAAATTGAGGGA 659
Query 738 AGTATAAGGGGAA-TACCAGCAGAAAACAGAGGTG-AAAAGGTATGGATAGTGTTCCAAG 795
||| ||||||||| | ||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 660 AGTGTAAGGGGAAGT-CCAGCAGAAAACAGAGGTGCAAAA-GTATGGTTAGTGTTCCAAG 717
Query 796 CTCTTGGGAACATTGCCTTTTCATATCCTTTCTCAATCATACTTCTTGAGATTCAGGACA 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTCTTGGGAACATTGCCTTTTCATATCCTTTCTCAATCATACTTCTTGAGATTCAGGACA 777
Query 856 CATTGAGATCACCACCGGCAGAGAAGCAAACGATGAAGAAAGCCTCGACGGTTGCGGTAT 915
|||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 778 CATTGAGATCACCACCAGCAGAGAAGGAAACGATGAAGAAAGCCTCAACGGTTGCGGTAT 837
Query 916 TCATCCAAACATTCTTCTTCTTCTGTTGTGGATGTTTTGGGTACGCGGCCTTTGGAGATT 975
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 838 TCATCCAAACATTCTTCTTCTTCTGTTGCGGATGTTTTGGGTACGCTGCCTTTGGAGATT 897
Query 976 CCACCCCGGGAAATCTCTTGACCGGTTTCGGCTTCTATGAGCCATTCTGGCTCGTCGATT 1035
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 898 CCACCCCGGGGAATCTCTTGACCGGTCCCGGCTTCTATGAGCCATTCTGGCTCGTCGATT 957
Query 1036 TCGCCAACGCTTGCATTGTTCTTCATTTAGTTGGTGGATATCAGGTATACAGTCAACCAA 1095
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 958 TCGCTAACGCTTGCATTGTTCTTCATTTAGTTGGTGGATATCAGGTATACAGTCAACCGA 1017
Query 1096 TTTTCGCGGCTGCGGAGAGATCGCTAACCAAGAAATATCCGGAAAATAAGTTTATCGCCA 1155
| |||||||||| |||||||| | |||| |||||||| || |||| ||||| || ||||
Sbjct 1018 TCTTCGCGGCTGTGGAGAGATGGTTAACTAAGAAATACCCACAAAACAAGTTCATTGCCA 1077
Query 1156 GATTCTACGGATTCAAACTGCCATTGTTGCGAGGAGAGA-CGGTGAGATTGAACCCAATG 1214
|||||||||||||||||||||||||||| ||||||| || ||||||||||||| ||||||
Sbjct 1078 GATTCTACGGATTCAAACTGCCATTGTTACGAGGAG-GAACGGTGAGATTGAATCCAATG 1136
Query 1215 AGGATGTGTTTGAGAACGATGTACGTGTTGATCACAACGGGAGTGGCAGTGATGTTTCCC 1274
||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1137 AGGATGTGTCTAAGAACGATGTATGTGTTGATCACAACGGGAGTGGCAGTGATGTTTCCC 1196
Query 1275 TACTTCAATGAAGTATTAGGAGTGGTGGGGGCACTTGCATTTTGGCCTCTGGCAGTGTAT 1334
|||||||||||||| |||||||| |||||||| ||| |||||||||| |||||||||||
Sbjct 1197 TACTTCAATGAAGTTTTAGGAGTATTGGGGGCAATTGGATTTTGGCCTTTGGCAGTGTAT 1256
Query 1335 TTTCCTGTGGAGATGTGTATATTGCAGAAGAAAATCCGAAGTTGGACGCGACCATGGCTT 1394
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1257 TTTCCTGTGGAGATGTGTATATTGCAGAAGAAGATCCCAAGTTGGACGCGACCATGGCTT 1316
Query 1395 CTTCTTAGAGGTTTCAGCTTTGTGTGCTTGCTCGTCTGTCTCTTGTCTCTTGTTGGATCT 1454
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1317 CTTCTTAGAGGTTTTAGCTTTGTTTGCTTGCTCGTCTGTCTATTGTCTCTTGTAGGATCT 1376
Query 1455 ATTTATGGACTTGTTGGAGCTAAATTCGGATGATTAGCCAAT 1496
|||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1377 ATTTATGGACTTGTCGGAGCAAAATTCGGATGATTAGCCAAT 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58925609015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5