BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23820.1
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941908 jgi|Araly1|941908|scaffold_602452.1 891 0.0
Ahg941906 jgi|Araly1|941906|scaffold_602450.1 566 1e-160
Ahg933094 jgi|Araly1|933094|scaffold_401082.1 220 1e-56
> Ahg941908 jgi|Araly1|941908|scaffold_602452.1
Length=666
Score = 891 bits (482), Expect = 0.0
Identities = 591/642 (92%), Gaps = 13/642 (2%)
Strand=Plus/Plus
Query 97 TTTTAAAGAGCTTTGAAGATCCATGGCGATGTCTCATGTCCAGCCTATGCTACTCCTCCT 156
||| || |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 1 TTTCAAGGAGCTTTGAAGATCCATGGCGATGTCTCATGTCCAGCCCATGCTTCTCATCCT 60
Query 157 CGTATCACTCTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAA 216
|| |||||||||||||||||| ||||||| ||||||||| |||||||||||||||| |||
Sbjct 61 CGCATCACTCTTCTTCTTACCCGCTTTGCATGGCGCCATCGATTTCGAATACTGCGGCAA 120
Query 217 AAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTGTTGGGCCTCA 276
|||||||||||||||||| ||||||||| |||| | ||||||||| ||||||||||||||
Sbjct 121 AAATGGAAACGATTACGGTACCGTCACTCGCATCGAGGTCTCTCCGTCTGTTGGGCCTCA 180
Query 277 CGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAGCAAAAACATC-CCCGCGG 335
|| |||||||||||||| |||||||||||||||||| ||||||||||||||| ||| | |
Sbjct 181 CGGAAACCCAACCATCAATATAAATTTATTCGGTTCCGCAAGCAAAAACATCTCCC-CTG 239
Query 336 GAACCCTTGTGTACGTAGCCTTTAGAGATGGGGAATTTACCGGCCTTTTAAAAACTTACA 395
|||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||
Sbjct 240 GAACCCTTGTGTACGTAGCCTTTAGATCTGGGGATTTTACTGGCCTTTTAAAAACTTACA 299
Query 396 ACCTTTGTGATGTGAGTGCATGTAACAATGAAGCTGAGATTGAAGCTGGCACCAACTTTG 455
| ||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||
Sbjct 300 ATCTTTGTGATGTGAGTACATGTAACACTGAATCTGAGATTGAAGCTGGCACCAACTTTG 359
Query 456 AGTTAACTCTTTCCGACGTTCTTTATGTTGGTTATGATGAGGAAATCAAGTACTCGGTAT 515
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 360 AGTTAACTCTTTCCGACGTTCTTTATGTTGGTTTTGATGAGGAAATCAAGTATTCGGTAT 419
Query 516 CTTTGCGCCGAAAGACCTTAGAGGAGGAGGATCCAATAATAAAAATGTGTGTCGACTTCA 575
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 420 CTTTGCGCCAAAAGACCTTAGAGGAGGAGGATCCAATAATAAAAATGTGTGTAGACTTCA 479
Query 576 AAGTACCTGCCCCAGCTCCTGCATTTGTCTCTATTTAGTCAAGTTGGCTGATGAAAAGAT 635
|||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 480 AAGTACCTGCCCCAGCTCTTGCATTTGTCTCTATGTAGTCAAGTTGGCAGATGAAAAAAT 539
Query 636 GTTTCCAAGTCTCTTTTGATTATATGAGTCTCTCTCGCAACTTTGCTTTTCCTTTTCCCT 695
| |||||||||| || |||||||||||||||||| ||||||| || |||||||||||||
Sbjct 540 GGTTCCAAGTCT-TT--GATTATATGAGTCTCTCTAGCAACTT-GCATTTCCTTTTCCCT 595
Query 696 TT-T-TGT---GT-T-GTCCAACAAATAAATTAAAATCTTGG 730
|| | ||| || | ||||||||||||||||||||||||||
Sbjct 596 TTATATGTAATGTGTTGTCCAACAAATAAATTAAAATCTTGG 637
> Ahg941906 jgi|Araly1|941906|scaffold_602450.1
Length=528
Score = 566 bits (306), Expect = 1e-160
Identities = 471/546 (86%), Gaps = 29/546 (5%)
Strand=Plus/Plus
Query 94 TCTTTTTAAAGAGCTTTGAAGATCCATGGCGATGTCTCATGTCCAGCCTATGCTACTCCT 153
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 4 TCTTTTCAAAGAGCTTTGAAGATCCATGGCGATGTCTCATGTCCAGCCCATGCTTCTCCT 63
Query 154 CCTCGTATCACTCTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGC 213
||||| |||||||||||||||||||| ||||| ||| ||||| ||||| ||||| |||||
Sbjct 64 CCTCGCATCACTCTTCTTCTTACCGGTTTTGCATGGTGCCATCGATTTTGAATATTGCGC 123
Query 214 CAAAAATGGAAACGATTACGG-AACCGTCACTAGCATTGTGGTCTCTCCATCTG-TTGGG 271
||||||||||||||||||||| ||| || ||| | |||| ||||||||| || | ||||
Sbjct 124 CAAAAATGGAAACGATTACGGTAAC-GTTACTCGTATTGAGGTCTCTCCGTC-GATTGG- 180
Query 272 CCTCA-CGAAAACCCA-ACCATCACTATAAATTTATTCGGTTCTGCAAGCAAAAACATCC 329
| | | |||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTTAGCGAAAACCCATAC-ATCACTATAAATTTATTCGGTTCTGCAAGCAAAAACATTT 239
Query 330 -CCGCGGGAACCCTTGTGTACGTAGCCTT-TAGAGATGGGGAATTTACCGGCCTTTTAAA 387
|| ||||||||||||||||||| | ||| |||| |||||| |||| ||| ||||||
Sbjct 240 TCC-CGGGAACCCTTGTGTACGT-GACTTATAGATCTGGGGATTTTATTGGCTTTTTAAG 297
Query 388 AACTTACAACCTTTGTGATGTGAGTGCATGTAACAATGAAGCTGAGATTGAAGCTGGCAC 447
|||||||||||| |||||||||| ||||||||||| |||| ||| |||||||||||||||
Sbjct 298 AACTTACAACCTCTGTGATGTGACTGCATGTAACACTGAATCTGTGATTGAAGCTGGCAC 357
Query 448 CAACTTTGAGTTAACTCTTTCCGACGTTCTTTATGTTGGTTATGATGAGGAAATCAAGTA 507
|||||||||| |||||||| |||| |||||||||||| | | | | |||||| |||
Sbjct 358 CAACTTTGAGATAACTCTTCCCGAAGTTCTTTATGTT----A--A-G-G-AAATCACGTA 408
Query 508 CTCGGTATCTTTGCGCCGAAAGA-CCTTAGAGGAGGAGGATCCAATAATAAAAATGTGTG 566
||||||||||||||| |||||| ||| | |||| ||||||||||||||||||||
Sbjct 409 TTCGGTATCTTTGCGC-GAAAGAACCT-ATC--AGGA---TCCAATAATAAAAATGTGTG 461
Query 567 TCGACTTCAAAGTACCTGCCCCAGCTCCTGCATTTGTCTCTATTTAGTCAAGTTGGCTGA 626
| ||||||||||||||||| ||||||||||||| ||| |||||||||||| ||||| ||
Sbjct 462 TGGACTTCAAAGTACCTGCTTCAGCTCCTGCATTGGTCACTATTTAGTCAATTTGGCAGA 521
Query 627 TGAAAA 632
||||||
Sbjct 522 TGAAAA 527
> Ahg933094 jgi|Araly1|933094|scaffold_401082.1
Length=356
Score = 220 bits (119), Expect = 1e-56
Identities = 173/198 (87%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 387 AAACTTACAACCTTTGTGATGTGAGTGCATGTAACAATGAAGCTGAGATTGAAGCTGGCA 446
|||||||||| || |||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 125 AAACTTACAATCTCTGTGATGTGAGTGCTTGTAACACTGAAGCTGAGATTGAAGCTGGCA 184
Query 447 CCAACTTTGAGTTAACTCTTTCCGACGTTCTTTATGTTGGTTATGATGAGGAAATCAAGT 506
||||||||| ||| |||||| |||| |||||||||||||||| |||||||||| ||||||
Sbjct 185 CCAACTTTGTGTTGACTCTTCCCGAAGTTCTTTATGTTGGTTTTGATGAGGAACTCAAGT 244
Query 507 ACTCGGTATCTTTGCGCCGAAAG-ACCTTAGAGGAGGAGGATCCAATAATAAAAATGTGT 565
|||| || |||||||||| |||| || | | | | ||| ||||||||||| ||||||
Sbjct 245 ACTCAGTTTCTTTGCGCCAAAAGTACGT--G-G-ACGAG---CCAATAATAAATATGTGT 297
Query 566 GTCGACTTCAAAGTACCT 583
|||||||||||| |||||
Sbjct 298 GTCGACTTCAAACTACCT 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30460210683
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5