BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23850.1
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941909 jgi|Araly1|941909|scaffold_602453.1 2436 0.0
Ahg485256 jgi|Araly1|485256|fgenesh2_kg.5__1248__AT3G48980.1 1000 0.0
> Ahg941909 jgi|Araly1|941909|scaffold_602453.1
Length=1675
Score = 2436 bits (1319), Expect = 0.0
Identities = 1564/1682 (93%), Gaps = 18/1682 (1%)
Strand=Plus/Plus
Query 53 CTTCTCCATCAGGAAGATTCCGATGAGAAACTCGCCGTCCAAGAACGGGTCGGCGGGAGG 112
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCTCCATCAGGAACAATCCGATGAGAAACTCGCCGTCCAAGAACGGGTCGGCGGGAGG 60
Query 113 GCATTCTCGTAC-TT-ATACAGACACAATCTGGTCTCCCTTTGTCAAGTCAGGTTTGGGA 170
|||||||||||| || || | ||||| ||||||||||||||||||||||| ||||| |||
Sbjct 61 GCATTCTCGTACTTTCAT-C-GACACTATCTGGTCTCCCTTTGTCAAGTCCGGTTTCGGA 118
Query 171 ATATCTCCCAACAGATCCTACGCCCTAGTCTCCCTCCTCATCCTCCTCATAGTCGGCGCT 230
|||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 119 ATATCTTCCAACAGATCCTATGCCCTAGTCTCCCTCTTCATCCTCCTCATAGTCGGCGCG 178
Query 231 TTTATCTCCACGCGCCTCCTCCTCG--A-CACCACCGTTCTGCTAGAGAAAAAAGCCGCG 287
||||||||||||||||| ||||||| | ||||||||||||| |||||||| ||||||||
Sbjct 179 TTTATCTCCACGCGCCTTCTCCTCGATACCACCACCGTTCTGATAGAGAAAGAAGCCGCG 238
Query 288 ACGACGACGACGACTAAAACCCAAACTCAGACGATAACCCCAAAATACCCTCGACCAACC 347
|||||||||| | |||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 239 ACGACGACGA-G--TAAAACCCAAACCCAGACGATATCCCCAAAATACCCTCGACCAACC 295
Query 348 ACGGTAATTACTCAAAGCCCTAAACCGGAGTTCACACTACACTGCTCCGCCAACGAAACC 407
|||| |||||| |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 296 ACGGCAATTACACAAAGCCCTACACCCGAGTTCACACTACACTGCTCCGCCAACGAAACC 355
Query 408 ACCGCGTCATGTCCGAGTAACAAATACCCGACGACAACGAGCTT-C--GAAGATGATGAT 464
||||||||||||||||||||||||||||||||||| ||||||| | |||||||| |||
Sbjct 356 ACCGCGTCATGTCCGAGTAACAAATACCCGACGACGGCGAGCTTCCGAGAAGATGACGAT 415
Query 465 ACAAACCATCCTCCGACCGCCACGTGTCCTGATTACTTCCGTTGGATTCACGAGGATCTC 524
|||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 416 ACAAACCATCCTCCAAACGCCACGTGTCCTGATTACTTCCGTTGGATCCACGAGGATCTC 475
Query 525 CGTCCATGGTCGAGGACGGGAATCACGAGGGAAGCATTGGAGCGAGCTAAAAAGACGGCG 584
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 476 CGTCCATGGTCGAGTACGGGAATCACGAGGGAAGCATTGGAGCGAGCCAAAAAGACGGCG 535
Query 585 ACTTTCCGGCTAGCGATCGTCGGCGGGAAAATTTACGTCGAGAAATTTCAAGATGCATTT 644
| |||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||| |||
Sbjct 536 AATTTCCGGCTAGCGATCATCGACGGGAAAATTTACGTAGAGAAGTTTCAAGATGCGTTT 595
Query 645 CAGACAAGAGACGTGTTCACAATCTGGGGTTTCTTACAGCTTTTACGGAAGTACCCTGGG 704
||||| |||||||||||||| || ||||| ||||||||||||||| | || |||||||||
Sbjct 596 CAGACGAGAGACGTGTTCACCATTTGGGGATTCTTACAGCTTTTAAGAAAATACCCTGGG 655
Query 705 AAGATTCCAGATCTCGAGCTTATGTTTGACTGCGTTGACTGGCCGGTCGTTAGAGCTACG 764
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 656 AAGATTCCAGATCTCGAGCTCATGTTTGACTGCGTTGACTGGCCGGTCGTTAAAGCTTCA 715
Query 765 GAATTCGCCGGAGCTAACGCGCCGTCGCCTCCGCCGCTGTTTCGTTACTGTGGGAATGAG 824
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 716 GAATTCGCCGGAGCTAATGCGCCGTCGCCTCCGCCGCTGTTTCGGTACTGCGGGAATGAG 775
Query 825 GAGACGCTTGATATCGTGTTTCCTGATTGGTCCTTCTGGGGATGGGCGGAGGTGAATATA 884
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 776 GAGACGCTTGATATCGTGTTTCCTGATTGGTCCTTTTGGGGATGGGCGGAGGTGAATATA 835
Query 885 AAGCCATGGGAGAGTTTGTTGAAGGAACTAAGAGAAGGGAATGAGAGGACTAAATGGATT 944
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 836 AAGCCATGGGAGAGTTTGTTGAAGGAACTAAGAGAAGGGAATCAGAGGACTAAATGGATA 895
Query 945 AACAGAGAGCCGTATGCTTATTGGAAAGGTAATCCAATGGTCGCAGAGACACGACAAGAT 1004
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AACAGAGAGCCTTATGCTTATTGGAAAGGTAATCCAATGGTCGCAGAGACACGACAAGAT 955
Query 1005 CTTATGAAATGTAATGTCTCTGAGGAACACGAGTGGAACGCTCGTTTGTATGCTCAGGAT 1064
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 956 CTTATGAAATGTAATGTCTCTGAGGAACACGAGTGGAACGCTCGTTTATATGTTCAGGAT 1015
Query 1065 TGGATCAAAGAATCAAAGGAAGGTTACAAGCAATCAGACTTGGCAAGCCAATGCCATCAC 1124
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1016 TGGATCAAAGAATCAAAGGAAGGCTACAAGCAATCAGATTTGGCAAGCCAATGCCATCAC 1075
Query 1125 AGATACAAGATATATATAGAAGGGTCTGCATGGTCCGTTAGCGAGAAGTACATTTTGGCG 1184
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1076 AGGTACAAGATATATATAGAAGGGTCTGCATGGTCAGTGAGCGAGAAGTACATTTTGGCG 1135
Query 1185 TGTGACTCTGTGACTCTGCTAGTGAAACCTCATTACTATGATTTCTTTACTAGAGGTTTG 1244
||||||||||||| |||| | |||||||||||||||||||||||||| || |||| |||
Sbjct 1136 TGTGACTCTGTGAGTCTGTTGGTGAAACCTCATTACTATGATTTCTTCACCCGAGGCTTG 1195
Query 1245 CTTCCAGCTCACCATTATTGGCCCGTTAGAGAGCACGATAAGTGCCGCTCCATCAAATTC 1304
||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1196 CTTCCGGCTCACCATTATTGGCCCGTTAGGGAGCACGATAAGTGTCGCTCTATCAAATTT 1255
Query 1305 GCCGTTGATTGGGGTAACTCTCACATTCAAAAGGCACAGGATATTGGAAAGGCGGCCAGC 1364
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1256 GCTGTTGATTGGGGAAACTCTCACATTCAAAAGGCACAGGATATTGGAAAGGCGGCGAGC 1315
Query 1365 GATTTTATCCAACAAGACCTCAAGATGGACTATGTGTATGACTACATGTACCATCTTTTA 1424
||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1316 GATTTCATCCAACAAGAACTCAAGATGGACTACGTGTATGATTACATGTACCATCTTTTA 1375
Query 1425 ACCGAATACTCGAAACTCCTCCAGTTTAAACCCGAGATTCCGCGGAATGCCGTGGAGATT 1484
||||||||||| |||||||||| ||||||||| |||||||| | ||||||||||||||||
Sbjct 1376 ACCGAATACTCTAAACTCCTCCGGTTTAAACCTGAGATTCCTCAGAATGCCGTGGAGATT 1435
Query 1485 TGCTCGGAAACAATGGCATGTCTGAGGAGTGGGAATGAGCGGAAGTTCATGACAGAATCA 1544
|| |||||||||||||| |||| ||| || ||||||||||||||||||||||| ||||||
Sbjct 1436 TGTTCGGAAACAATGGCGTGTCCGAGAAGCGGGAATGAGCGGAAGTTCATGACGGAATCA 1495
Query 1545 CTCGTGAAGCAACCTGCGGATTCTGGTCCGTGTGCCATGCCTCCTCCTTATGATCCGGC- 1603
| || ||||| |||||||| |||||||||||||||||||| ||||| ||| |||||||
Sbjct 1496 TTTGTAAAGCACCCTGCGGAGTCTGGTCCGTGTGCCATGCCGCCTCCGTATAATCCGGCA 1555
Query 1604 TACGTATT-ACGAGGTTGTGAAGAGGAAACAGAGTACTAATATGAGAATCCTACAGTGGG 1662
| | | || | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 T-C-TCTTTATGGGGTTGTGAAGAGGAAACAGAGTACTAATATGAGAATCCTACAGTGGG 1613
Query 1663 AAATGAAGTACTGGAGTAAGCAGAATCAAACCGGCTCTTGAATT-TTTCATCTTCATTTC 1721
| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1614 AGATGAAGTACTGGAGCAAGCAGAATCAAACCGGCTCTTGAATTCTTTCATCTTCATTTC 1673
Query 1722 GG 1723
||
Sbjct 1674 GG 1675
> Ahg485256 jgi|Araly1|485256|fgenesh2_kg.5__1248__AT3G48980.1
Length=1782
Score = 1000 bits (541), Expect = 0.0
Identities = 1012/1237 (82%), Gaps = 42/1237 (3%)
Strand=Plus/Plus
Query 481 CCGCCACGTGTCCTGATTACTTCCGTTGGATTCACGAGGATCTCCGTCCATGGTCGAGGA 540
|||||||||||||||| || ||||| ||||||||||||||||| || |||||| || ||
Sbjct 398 CCGCCACGTGTCCTGACTATTTCCGATGGATTCACGAGGATCTACGGCCATGGGAGAAGA 457
Query 541 C-GGGAATCACGAGGGAAGCATTGGAGCGAGCTAAAAAGACGGCGACTTTCCGGCTAGCG 599
| ||| |||||||||||||| |||||||| || || |||||||| ||||||||| ||
Sbjct 458 CAGGG-ATCACGAGGGAAGCCTTGGAGCGCGCCAATGCGACGGCGAATTTCCGGCTGGCA 516
Query 600 ATCGTCGGCGGGAAAATTTACGTCGAGAAATTTCAAGATGCATTTCAGACAAGAGACGTG 659
|| || ||||| || ||||||||||| |||| || || |||||||| ||||| ||
Sbjct 517 ATTATCAACGGGAGGATCTACGTCGAGAAGTTTCGTGAGGCTTTTCAGACGAGAGATGTT 576
Query 660 TTCACAATCTGGGGTTTCTTACAGCTTTTACGGAAG-TACCCTGGG-AAGATTCCAGATC 717
||||| |||||||| ||| ||||||| |||||| || || || ||| |||||||| ||||
Sbjct 577 TTCACGATCTGGGGATTCGTACAGCTGTTACGG-AGATATCC-GGGAAAGATTCCGGATC 634
Query 718 TCGAGCTTATGTTTGACTGCGTTGACTGGCCGGTCGT-TAGAGCTACGGAATTCGCCGGA 776
||||||| |||||||||||||||||||||||||| || || || | ||||||||||||
Sbjct 635 TCGAGCTCATGTTTGACTGCGTTGACTGGCCGGTAGTGAAG-GCGGCTGAATTCGCCGGA 693
Query 777 GCT-AACGCGCCGT-CGCCTCCGCCGCTGTTTCGTTACTGTGGGAATGAGGAGACGCTTG 834
| | | | || | |||| ||||| |||| ||||| |||| || || |||||||| |
Sbjct 694 GTTGATC-AACC-TCCGCCGCCGCCATTGTTCCGTTATTGTGCTAACGACGAGACGCTCG 751
Query 835 ATATCGTGTTTCCTGATTGGTCCT-TCTGGGGATGGGCGGAGGTGAATATAAAGCCATGG 893
| || || |||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 752 ACATTGTATTTCCTGATTGGTCCTAT-TGGGGATGGGCTGAGGTGAATATAAAGCCATGG 810
Query 894 GAGAGTTTGTTGAAGGAACTAAGAGAAGGGAATGAGAGGACTAAATGGATTA-ACAGAGA 952
|||||| | ||||| ||||| ||||||||||| ||||||||||||||| || |||||||
Sbjct 811 GAGAGTCTATTGAAAGAACTTAGAGAAGGGAACCAGAGGACTAAATGGA-TAGACAGAGA 869
Query 953 GCCGTATGCTTATTGGAAAGGTAATCCAATGGTCGCAGAGAC-ACGACAAGATCTTATGA 1011
|| |||||||| |||||||| ||||| | ||| || ||||| | ||| ||||| ||||
Sbjct 870 ACCTTATGCTTACTGGAAAGGGAATCCGACGGTTGCTGAGACGA-GACTTGATCTCATGA 928
Query 1012 AATGTAATGTCTCTGAGGAACACGAGTGGAACGCTCGTTTGTATGCTCAGGATTGGATCA 1071
|||||||| |||| ||||| | || ||||| ||||||||||| ||||| ||| |||
Sbjct 929 AATGTAATCTCTCCGAGGAGTATGACTGGAAAGCTCGTTTGTACAAGCAGGACTGGGTCA 988
Query 1072 AAGAATCAAAGGAAGGTTACAAGCAATCAGACTTGGCAAGCCAATGCCATCACAGATACA 1131
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 989 AGGAATCAAAGGAAGGTTACAAGCAGTCAGACTTGGCGAGCCAATGCCATCACAGGTACA 1048
Query 1132 AGATATATATAGAAGGGTCTGCATGGTCCGTTAGCGAGAAGTACATTTTGGCGTGTGACT 1191
|||| || |||||||||||||||||||| || || |||||||||||| |||| |||||||
Sbjct 1049 AGATTTACATAGAAGGGTCTGCATGGTCGGTGAGTGAGAAGTACATTCTGGCATGTGACT 1108
Query 1192 CTGTGAC-TCTGCTAGTGAAACCTCATTACTATGATTTCTTTACTA-GAGGTTTGCTTCC 1249
| ||||| | |||| || ||||| |||||||| |||||||| || | ||||| || ||||
Sbjct 1109 CGGTGACAT-TGCTGGTCAAACCACATTACTACGATTTCTTCAC-ACGAGGTATGTTTCC 1166
Query 1250 AGCTCACCATTATTGGCCCGT--TAGAGAGCACGATAAGTGCCGCTCCATCAAATTCGCC 1307
|| ||||||||||||||||| | || || |||| || |||||||||||||||||||||
Sbjct 1167 AGGACACCATTATTGGCCCGTCATGGA-AG-ACGACAAATGCCGCTCCATCAAATTCGCC 1224
Query 1308 GTTGATTGGGGTAACTCT-CACATTCAAAAGGCACAGGATATTGGAAAGGCGGCCAGCGA 1366
||||||||||| |||| | || || ||||||||||| || || || ||| ||| || ||
Sbjct 1225 GTTGATTGGGGCAACT-TGCATATGCAAAAGGCACAAGACATCGGGAAGAAGGCAAGTGA 1283
Query 1367 TTTTATCCAACAAGACCTCAAGATGGACTATGTGTATGACTACATGTACCATCTTTTAA- 1425
||| | |||||||| || || |||||||||||||| || ||||||| |||||| ||||
Sbjct 1284 GTTTGTGCAACAAGAACTTAAAATGGACTATGTGTACGATTACATGTTCCATCTCTTAAT 1343
Query 1426 CCGAATACTCGAAACTCCTCCAGTTTAAACCCGAGATTCCGCGGAA-TGCCGTGGAGATT 1484
|| ||||||| |||||||||| ||||||||||||||| || | ||| | || ||| |
Sbjct 1344 CC-AATACTCTAAACTCCTCCGGTTTAAACCCGAGATCCCTCAGAACT-CCACCGAGCTC 1401
Query 1485 TGCTCGGAAACAATGGCATGTCTGAGG-AGTGGGAATGAGCGGAAGTTCATGACAGAATC 1543
||||| || ||||||| || | |||| | ||| |||||||||||||| |||| |||||
Sbjct 1402 TGCTCAGAGGCAATGGCGTGCCCGAGGGA-TGGAAATGAGCGGAAGTTTATGATGGAATC 1460
Query 1544 ACTCGTGAAGCAACCTGCGGATTCTGGTCCGTGTGCCATGCCTCCTCCTTATGATCCGGC 1603
||| ||||| | || || || | ||||| || |||||||| ||||| |||||||| ||
Sbjct 1461 ACTTGTGAAACGCCCAGCTGAGACCGGTCCCTGCGCCATGCCGCCTCCGTATGATCCAGC 1520
Query 1604 -TACGTATTACGAGGTTGTGAAGAGGAAACAGAGTACTAATA-TGAGAATCCTACAGTGG 1661
| ||| |||| |||| |||| |||| ||||||||| | || | |||||| |||||||
Sbjct 1521 AT-CGTTTTACTCGGTTTTGAAAAGGAGACAGAGTACGACTAGT-AGAATCGAACAGTGG 1578
Query 1662 GAAA-TGAAGTACTGGAGTAAGCAGAATCAA-ACCGG 1696
|| | | ||||||||||| |||||||| ||| |||||
Sbjct 1579 GAGAGT-AAGTACTGGAGGAAGCAGAA-CAAGACCGG 1613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71381119130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5