BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23890.1
Length=3137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489250 jgi|Araly1|489250|fgenesh2_kg.6__2384__AT5G23890.1 4761 0.0
> Ahg489250 jgi|Araly1|489250|fgenesh2_kg.6__2384__AT5G23890.1
Length=3047
Score = 4761 bits (2578), Expect = 0.0
Identities = 2904/3060 (95%), Gaps = 27/3060 (1%)
Strand=Plus/Plus
Query 84 CTCTCTACAATCAAACCATGGCTTCTGCGACCGCCACGTGGACACCTACCTCCCTCCAGC 143
|||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1 CTCTCTACAAACAAACCATGGCTTCTGCGACCGCCACGTGGACACCTTCCTCTCTCCAGC 60
Query 144 TTCGTCTCGCTTTGAGCTCCGGCGTGCGTCGGAAATCTCCCGCCGTTTACTTACGACCAT 203
| ||||||||||||||||||||||| || ||||| || | ||||||||||||||||||||
Sbjct 61 TCCGTCTCGCTTTGAGCTCCGGCGTTCGCCGGAATTCACGCGCCGTTTACTTACGACCAT 120
Query 204 CGCGATTGGCTAGGAAATCGGGTTATGGAATTGTCTGTGTTTCGCAGAAGCCTGAAGTTG 263
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGCGATTAGCTAGGAAATCCGGTTATGGAATTGTCTGTGTTTCGCAGAAGCCTGAAGTTG 180
Query 264 ATGCGTGGACCGGATCGGATTCGTCAAAGTCGTCGGCTGATAATTTGGCTGGGTGGGATG 323
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 181 ATGCGTGGACTGGATCGGATTCGTCAAAGTCGTCGGCGGATAATTTAGCTGGGTGGGATG 240
Query 324 ATTCCGATAACGATGACAAGAAGTCTTCCAGAGTTAAGAAGAAGAGTTTGATTGAAGGTG 383
|||||||||||||||| ||||||||||| |||| |||||| |||||||||| ||||||||
Sbjct 241 ATTCCGATAACGATGATAAGAAGTCTTCTAGAGCTAAGAATAAGAGTTTGAGTGAAGGTG 300
Query 384 TAGTTGGGGCTGGAGTGGCTGGAATCATTTTGTTTCTTGGGCTAAGCTATGCAGCAGCAT 443
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 TAGTTGGTGCTGGAGTGGCTGGAATCATTTTGTTTCTTGGGCTAAGCTATGCAGCAGCTT 360
Query 444 CTTTTAGCAAGCGAACaaaaaaaCAGGAAATGCATTCGTTGACTTCTCAGCAGGAAAGCA 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTTTAGCAAGCGAACAAAAAAACAGGAAATGCATTCGTTGACTTCTCAGCAGGAAAGCA 420
Query 504 TGATTCAATCATCTGATGAAATTTCTAGTGATGAGATTAAGGTAGCTAACAGTGAGGAAA 563
|| |||| | |||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 421 TGGTTCAGTTATCTGACGAAACTTCTAGTGATGAGATCAAGGTAGCTAACAGTGAGGAAA 480
Query 564 GCAATCTTAAGGACGAGGATAAGAGTATAGAAAGCAATGATGTAGCTCAGAAAAGTGATG 623
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 ACAATCTTAAGGACGAGGATAAGAGGATAGAAAGCAATGATGTAGCTCAGAAAAGTGATG 540
Query 624 AAGGGTCTGGCGAAGATAAACTACTTGGTAAGGAGACATCGTCATTTGATGGTGTCATGA 683
|||||||||| |||||||||||||||||||| ||||| | |||| ||||||||||||||
Sbjct 541 AAGGGTCTGGTGAAGATAAACTACTTGGTAACGAGACGTTGTCAGTTGATGGTGTCATG- 599
Query 684 C-TGATGAAGCGGATGCCACTGAAAGTATCCCCCAAAATACTCCTGAAGCAGATTTGATG 742
| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 600 CTTGATGAAGCGGATGCCACTGAAAGTATCCCCCAGAATACGCCTGAAGCAGATTTGATA 659
Query 743 GTCAATGCGGAAACTGATCCTGAGACAGCAGAAAGTGAGAAAATAATATCTGAATCTAAG 802
||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 660 ATCAGTGTGGAAACTGATCCTGAGACAGCAGAAAGTGAGAAAATAATTTCTGAATCTAAG 719
Query 803 TCTCTGTTAGACTCATCCACTGAGCCTATTCTTCTAGATGCAGAAAGTAGTAATCTTGTG 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCTCTGTTAGACTCATCCACTGAGCCTATTCTTCTAGATGCAGAAAGTAGTAATCTTGTG 779
Query 863 GGCGTGGAAAATACAAATTCTGAAGATCCAGAGAGTCTCCTGAACACTGAACCAACCAAT 922
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 GGCGTGGAAAATACAAATTCTGAAGATCCAGAGAGTCTCCCGAACACTGAACCAACCAAT 839
Query 923 GTGTCTGATTTAGAAAATCATGTTAACAGTCAGAAGGAAGATTCCTTATCTTCTTTATCA 982
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 840 GTGTCTGATTTAGAAAATCGTGTTAACAGTCAGAAGGAAGATTCCCTATCTTCTTTATCT 899
Query 983 GGCATCGATGCTTATGCAGCCTCGGGGACTGTAACT---GAGCTTCCTGAGGTTTCTTCA 1039
||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 900 GGCATTGATGCGTATGCAGCCTCCGGGACTGTAACTGAGGAGCTTCCTGAGGTTTCTTCA 959
Query 1040 CAATTGGATTCGACTTCAAAACCTCAGATTGTGCCACTAAATGACACGGAAACAGCATT- 1098
|||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 960 CAATCGGATTCGACTTCGAATCCTCAAATTGTGCCACTAAATGACACGGAAACAGCATTC 1019
Query 1099 TGCCACTGCTGAAGAGCTTTCTGAGGTTAACGGAACACCGGAGTACTTCGAAACCTCA-G 1157
| | |||| ||||||||||||||||||||||||||||||||||||||| | || || |
Sbjct 1020 T-CGACTGGTGAAGAGCTTTCTGAGGTTAACGGAACACCGGAGTACTT-G--GCCGCAGG 1075
Query 1158 -A-T-TGGTCATCAATATCAGACATAGATACAACGAAAG-AACTTGAATCTTCAAAATCT 1213
| | | |||||||||||| |||||||||||||| |||| ||| ||||||||||||||||
Sbjct 1076 AAGTAT-GTCATCAATATCGGACATAGATACAACCAAAGAAAC-TGAATCTTCAAAATCT 1133
Query 1214 CCTGTGCCAGAATCAACAGATGGGTCAAAAGATGAACTAAACATATATAGTCAAGATGAG 1273
|||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1134 CCTGAGCCAGAATCAATAGATGGGTCAAAAGATGAACTAGACATATATAGTCAAGATGAG 1193
Query 1274 CTTGACGACAACAGAATGCTTTTGGAAATACCCAGTGGTGGAAGTGCATTTTCTTCTGCT 1333
||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1194 CTTGACGACAATGGAAAACTTTTGGAAATACCGAGTGGTGGAAGTGCATTTTCTTCTGCA 1253
Query 1334 GGAATTCCTGCACCTTTTATGTCTGTTATAGTTAATCCTGGGAAGATTCTTGTCCCCGTA 1393
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
Sbjct 1254 GGAATTCCTGCACCTTTTATGTCTGTTCTAGTTAATCCTGGAAAGATTCTTGTCCCCGCA 1313
Query 1394 GCTGCGGATCAGATCCAGTGTCAAGCATTTGCAGCTCTGCAAGTTCTGAAGGTCATTGAA 1453
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GCTGCGGATCAGGTTCAGTGTCAAGCATTTGCAGCTCTGCAAGTTCTGAAGGTCATTGAA 1373
Query 1454 ACTGATACACAACCTAGTGATCTATGTACTCGCAGAGAATATGCCAGGTGGCTGATTTCT 1513
||||| || ||||| ||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1374 ACTGACACCCAACCCAGTGATCTATGCACTCGCAGAGAATATGCCAGGTGGCTGGTTTCT 1433
Query 1514 GCCAGCAGCGCGTTATCAAGAAACACAACCTCAAAAGTGTATCCTGCTATGTATATTGAG 1573
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1434 GCCAGCAGCGCGTTATCAAGAAACACAACCTCAAAAGTGTATCCTGCTATGTATATAGAG 1493
Query 1574 AATGTTACTGAGCTTGCTTTTGATGATATTACTCCCGAAGACCCTGATTTTTCTTCCATT 1633
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1494 AATGTTACTGAGCTTGCTTTCGATGATATTACTCCTGAAGACCCTGATTTTTCTTCCATT 1553
Query 1634 CAAGGGTTGGCAGAAGCAGGACTTATCGCGAGCAAGCTTTCTAACCGTGATTTACTTGAC 1693
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1554 CAAGGGTTGGCAGAAGCAGGACTTATTGCGAGCAAGCTTTCTAACCGTGATTTGCTTGAC 1613
Query 1694 GATGTTGAGGGCACATTCTTATTTTCCCCTGAAAGCCTTCTTTCACGCCAGGATCTGATA 1753
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1614 GATGTTGAGAGCACATTCTTATTTTCCCCTGAAAGCCTTCTTTCACGTCAGGATCTTATA 1673
Query 1754 AGCTGGAAAATGGCCTTGGAGAAACGACAACTTCCAGAAGCTGATAAAAAGATGCTGTAT 1813
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1674 AGCTGGAAAATGGCCTTGGAGAAACGACAGCTTCCAGAAGCTGATAAAAAGATGCTGTAT 1733
Query 1814 AAACTCTCGGGCTTCATTGACATCGATAAGATAAACCCAGATGCATGGCCTTCCATCATT 1873
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1734 AAACTCTCGGGTTTCATTGACATCGATAAGATAAACCCAGATGCATGGCCTGCCATCATC 1793
Query 1874 GCAGATTTATCTACTGGGGAACAAGGAATCGCTGCCCTTGCATTTGGTTGTACAAGATTG 1933
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1794 GCAGATTTATCTACTGGGGAACAAGGAATTGCTGCTCTTGCATTTGGTTGTACAAGATTG 1853
Query 1934 TTTCAGCCTCATAAACCAGTCACTAAAGGGCAAGCTGCCATTGCTCTTTCAAGTGGTGAG 1993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 TTTCAGCCTCATAAACCAGTCACTAAAGGGCAAGCTGCCATTGCTCTTTCAAGTGGTGAG 1913
Query 1994 GCATCTGACATTGTCAGTGAGGAATTGGCACGTATCGAAGCAGAATCCATGGCTGAAAAA 2053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 GCATCTGACATTGTCAGTGAGGAATTGGCACGTATCGAAGCAGAATCCATGGCTGAAAAA 1973
Query 2054 GCTGTGTCTGCGCATAACGCCCTCGTTGCAGAGGTCGAAAAGGATGTCAATGCCAG-TTT 2112
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1974 GCTGTGTCTGCGCATAACGCCCTCGTTGCAGAGGTCGAAAAGGATGTCAATGCCAGCTTT 2033
Query 2113 CGAGAAGGAGCTTTCCATGGAACGAGAAAAGATTGAAGCAGTCGAGAAAATGGCGGAACT 2172
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 -GAGAAGGAGCTTTCCATGGAACGAGAAAAGATTGAAGCAGTCGAGAAAATGGCGGAACT 2092
Query 2173 GGCGAAAGTGGAGTTGGAGCAGCTGAGGGAGAAGAGAGAGGAAGAGAATCTGGCGTTGGT 2232
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2093 GGCGAAAGTGGAGTTGGAGCAGCTTAGGGAGAAGAGAGAGGAAGAGAATCTGGCGTTGGT 2152
Query 2233 TAAAGAACGAGCTGCGGTTGAGTCAGAAATGGAGGTCCTCTCACGGTTAAGACGTGATGC 2292
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2153 GAAAGAACGAGCTGCGGTTGAGTCAGAAATGGAGGTACTCTCACGGTTAAGACGTGATGC 2212
Query 2293 GGAAGAGAAGCTGGAGGATTTGATGAGTAACAAGGCAGAGATAACCTTTGAGAAAGAGAG 2352
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 2213 GGAAGAGAAGCTGGAGGATTTGATGAGTAACAAGGCAGAAATATCCTTTGAGAAAGAGAG 2272
Query 2353 GGTTTTCAATCTTCGAAAAGAGGCTGAAGAAGAGAGCCAGCGGATTTCAAAGTTGCAGTA 2412
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2273 GGTTTTCAACCTTCGAAAAGAGGCTGAAGAAGAGAGCCAGCGGATTTCAAAGTTGCAGTA 2332
Query 2413 TGAATTGGAAGTTGAACGAAAAGCCTTGTCCATGGCCAGATCGTGGGCCGAGGAGGAAGC 2472
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2333 CGAATTGGAAGTTGAACGAAAAGCCTTGTCCATGGCCAGATCATGGGCCGAGGAGGAAGC 2392
Query 2473 AAAGAAAGCTAGAGAACAAGGGAGGGCCTTAGAAGAAGCTAGAAAGCGATGGGAAACAAA 2532
||||| ||||||||||||||| || ||||||||||| ||||| |||||||||||||||||
Sbjct 2393 AAAGAGAGCTAGAGAACAAGGAAGAGCCTTAGAAGATGCTAGGAAGCGATGGGAAACAAA 2452
Query 2533 TGGACTGAGAGTTGTTGTTGACAAAGACCTTCAAGAGACGAGCAGCAGAGAGACAGAACA 2592
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 2453 TGGACTGAGAGTTGTTGTTGACAAAGACCTTCAAGAGACGATCAGCGGAGAGACAGAACA 2512
Query 2593 AAGCATAGTACTAAACGA-GATGGAGAGATCCTCAGTTGAAGAAACTGAG-AGGAGAGCC 2650
|||| || |||||||||| | ||||||||||||||||||||||||| ||| || ||||||
Sbjct 2513 AAGCGTATTACTAAACGATG-TGGAGAGATCCTCAGTTGAAGAAACCGAGGAG-AGAGCC 2570
Query 2651 AAAACCCTGATGGATAAGCTGAAGGAGATGGCTGGAACCGTGAGTGGAAAGTCCCGGGAA 2710
|||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 2571 AAAACCCTGATGGATAAGCTTAAGGAGATGGCTGGAACCGTGAGTGGAAAATTCCGGGAG 2630
Query 2711 GTGATCTTCACTGTGATGGAGAAAATACGTTTATGGATTACAGTTTTGAAGGAATATGCA 2770
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 2631 GTGATCTTCATTGTGATGGAGAAAATACGTTTATGGATTACAATTTTGAAGGAATACGCA 2690
Query 2771 GTGAATTTAGGGAAGCGAGCTGGGGAAATGAGAGATGCAGCCATTGTGAGGGCAAAAGGA 2830
|||||||||||||||||||| ||||||||||||||||| |||||||| | ||| |||| |
Sbjct 2691 GTGAATTTAGGGAAGCGAGCCGGGGAAATGAGAGATGCGGCCATTGTTAAGGCGAAAGTA 2750
Query 2831 GCAGC-AGCAGATGTTGAGCAAGGGACAGTTCAGGTGAGCGATAAGGTGAAGAAAATGGC 2889
|| || | |||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2751 GCCGCGA-CAGAGGTTGAGAAAGGGACAGTTCAGGTGAGCGATAAGGTGAAGAAAATGGC 2809
Query 2890 TGAGGAGTGTAGAGATGGAGTTGGGAAGATCTCTCAGAGGTTCAAGACCTAAAGTAACAG 2949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2810 TGAGGAGTGTAGAGATGGAGTTGGGAAGATCTCTCAGAGGTTCAAGACCTAAAGTAACAG 2869
Query 2950 TCTTTTAACTTTTTTGTATCTTGTTTCTACATGATAAAAATAAAAGAGAATAATGGGATG 3009
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2870 TCTTTTAACTTTTT-GTATCTTGTTTCTAAATGATAAAAATAAAAGAGAATAATGGGATG 2928
Query 3010 GCCATTACATTTACAGTATTGGTCAGTGATGTTCAGAATTCATAATTGTATCATTTTGTA 3069
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2929 GCCATTACATTTACAGTATTGGTCAGTGTTGATCAGAATTCATAATTGTATCATTTTGTA 2988
Query 3070 ATCTTTGTTATGTGGTTTACTAATACTTACACTTTAGTGCGATATGTTATAATTGCCTTG 3129
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 2989 ATCTTTGTTATGTGGTT-ACTAATACTTACACTTCAGTGCGATATGTTATAATTGCCTTG 3047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118498752195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5