BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23900.1
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489251 jgi|Araly1|489251|fgenesh2_kg.6__2385__AT5G23900.1 1099 0.0
Ahg347994 jgi|Araly1|347994|fgenesh1_pg.C_scaffold_5001386 562 1e-159
> Ahg489251 jgi|Araly1|489251|fgenesh2_kg.6__2385__AT5G23900.1
Length=782
Score = 1099 bits (595), Expect = 0.0
Identities = 735/799 (92%), Gaps = 23/799 (3%)
Strand=Plus/Plus
Query 42 AAAATGAAGCACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCACTGGCAGAATTAT 101
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AAAATGAAGCACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCATTGGCAGAATTAT 60
Query 102 GTCAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGGAGACGTGTTGCTAGACAGAAG 161
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GTCAAGACTTGGTTTAACCAACCTGCCAGGAAAACAAGGAGACGTGTTGCTAGACAGAAG 120
Query 162 AAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCTCCGACCTGTTGTTCATGGT 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCTCCGACCTGTTGTTCATGGT 180
Query 222 CAGACACTTAAGTACAACATGAAAGTTAGAGCTGGAAAAGGATTCACTCTTGAAGAGCTT 281
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAGACTCTTAAGTACAACATGAAAGTTAGAGCTGGAAAAGGATTCACTCTTGAAGAGCTT 240
Query 282 AAGGTTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCTGTTGATCACCGA 341
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 AAGACTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCAGTTGATCACCGT 300
Query 342 CGCAAGAACCGTTCTTTGGAGGGTCTTCAGTCCAATGTCCAAAGGTTAAAGACTTACAAG 401
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 301 CGCAAGAACCGTTCTTTGGAGGGTCTTCAATCCAATGTTCAAAGGTTGAAGACTTACAAG 360
Query 402 GCTAAGTTGGTGGTGTTCCCTCGCCGTTCCCGTCAAGTCAAGGCTGGTGATTCTACTCCA 461
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 GCTAAGTTGGTTGTGTTCCCTCGCCGTTCCCGTAAAGTCAAGGCTGGTGATTCTACTCCA 420
Query 462 GAGGAGCTTGCCAATGCTACTCAAGTTCAAGGTGATTACATGCCAATTGCCAGTGTCAAG 521
||||||||||| |||||||| ||||| ||||||||||||||||| ||||| |||| |||
Sbjct 421 GAGGAGCTTGCTAATGCTACCCAAGTCCAAGGTGATTACATGCCTATTGCTAGTGAGAAG 480
Query 522 GCAGCTATGGAGCTAGTTAAGCTGACTGCAGATTTGAAGGCGTTCAAGGCTTACGATAAG 581
||||| |||||||| || ||||| ||||| ||| |||||||||||||||| || ||||||
Sbjct 481 GCAGCCATGGAGCTTGTGAAGCTTACTGCGGATATGAAGGCGTTCAAGGCCTATGATAAG 540
Query 582 ATTCGTTTGGAGCGCACAAACGCACGTCATGCTGGTGCCAGAGCCAAGAGGGCTGCCGAG 641
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 541 ATTCGTTTGGAGCGCACAAACGCACGTCATGCTGGTGCCAGAGCCAAGAGGGCCGCTGAG 600
Query 642 GCTGAGAAAGAAGAGAAGAAGTAAAATTCGTTGCTTTATAGAGCTTAATCATTCTTGAAT 701
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 601 GCTGAGAAAGAAGAGAAGAAGTAAAAATCGTTGCTTTA--GAGCTTAATCATTCTTGAAT 658
Query 702 TCTTGTTCTTCTGGTTTTTGATTTTGTGCACGACTCTGTTTTCTTTTTGGTGCGGTTTAT 761
|||| |||||| || ||||| | | | | |||| |||||| ||||||||||
Sbjct 659 TCTTCTTCTTCCGG------ATTTT-T-CT----T-T-TTTT-TTTTTGTTGCGGTTTAT 703
Query 762 CAATACATAGATCTC-AAAGGTTTCTGGTACTTGGGAA-----AGTTTATGGAAGAAATT 815
|||||| |||||||| ||| ||||||| ||||||| |||||||||||||||||
Sbjct 704 CAATACTTAGATCTCGAAATTTTTCTGGGACTTGGGTTTTCTGAGTTTATGGAAGAAATT 763
Query 816 ATAACGAGTTTCTATATAC 834
|||||||||||||||||||
Sbjct 764 ATAACGAGTTTCTATATAC 782
> Ahg347994 jgi|Araly1|347994|fgenesh1_pg.C_scaffold_5001386
Length=621
Score = 562 bits (304), Expect = 1e-159
Identities = 525/630 (83%), Gaps = 22/630 (3%)
Strand=Plus/Plus
Query 45 ATGAAGCACAACAACGTTATCCC-GA-GCTCACACTTTC-GCAAGCACTGGCAGAATTAT 101
|||||||||||||| || ||||| | | | ||| ||| |||||||||||||| |||
Sbjct 1 ATGAAGCACAACAATGTCATCCCTAATGGT--CAC-TTCAAAAAGCACTGGCAGAACTAT 57
Query 102 GTCAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGGAGACGTGTTGCTAGACAGAAG 161
|| ||||| ||||||||||||||||| ||||| || || ||| | |||| || || |||
Sbjct 58 GTAAAGACATGGTTTAACCAGCCTGCTAGGAAAACCAGAAGAAGAATTGCGAGGCAAAAG 117
Query 162 AAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCTCCGACCTGTTGTTCATGGT 221
|||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||||||
Sbjct 118 AAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGT 177
Query 222 CAGACACTTAAGTACAACATGAAAGTTAGAGCTGGAAAAGGATTCACTCTTGAAGAGCTT 281
||||| ||||||||||||||||| || ||| | || |||||||||||||||||||||||
Sbjct 178 CAGACTCTTAAGTACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTC 237
Query 282 AAGGTTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCTGTTGATCACCGA 341
|||| ||||||||||||||||||||||||||| |||||||| ||| ||||||| || ||
Sbjct 238 AAGGCTGCTGGTATCCCAAAGAAGTTGGCTCCTACAATCGGTATTGCTGTTGACCATCGT 297
Query 342 CGCAAGAACCGTTCTTTGGAGGGTCTTCAGTCCAATGTCCAAAGGTT-AAAGACTTACAA 400
||||||||||| ||||||||||||||||| |||||||||| ||| | ||| || |||||
Sbjct 298 CGCAAGAACCGATCTTTGGAGGGTCTTCAAACCAATGTCCAGAGGCTGAAA-ACCTACAA 356
Query 401 GGCTAAGTTGGTGGTGTTCCCTCGCCGTTCCCGTCAAG-TCAAGGCTGGTGATTCTACTC 459
| |||||||||| | ||||| || ||| | || |||| | ||||||||||| ||||| |
Sbjct 357 GACTAAGTTGGTCATCTTCCCGCGTCGTGCTCG-CAAGGTTAAGGCTGGTGACTCTACAC 415
Query 460 CAGAGGAGCTTGCC-AATGCTACTCAAGTTCAAGGTGATTACATGCCAATTGC-CAGTGT 517
|||| ||| ||| | |||||||| ||||||||||| || ||| |||| |||| | | |
Sbjct 416 CAGAAGAG-TTGGCTAATGCTACCCAAGTTCAAGGAGACTACTTGCCTATTGTAC-GCGA 473
Query 518 CAAGGCAGCTATGGAGCTAGTTAAGCTGACTGCAGATTTGAAGGCGTTCAAGGCTTACGA 577
||| || | |||||||| || ||||||||| |||| ||||| | |||||||| || ||
Sbjct 474 GAAGCCAACCATGGAGCTCGTCAAGCTGACTTCAGAAATGAAGTCCTTCAAGGCGTATGA 533
Query 578 TAAGATTCGT-TTGGAGCGCACAAAC--GCACGTCATGCTGGTGCCAGAGCCAAGAGGGC 634
|||||| ||| ||| ||||||| ||| | | | ||||||||||| ||||||||||| ||
Sbjct 534 TAAGATACGTCTTG-AGCGCACGAACAAG-A-GACATGCTGGTGCTAGAGCCAAGAGAGC 590
Query 635 -TGCCGAGGCTGAGAAAGAAGAGAAGAAGT 663
| |||||||||||||||||||||||||||
Sbjct 591 CT-CCGAGGCTGAGAAAGAAGAGAAGAAGT 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31680144027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5