BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23903.1 Length=485 Score E Sequences producing significant alignments: (Bits) Value Ahg489252 jgi|Araly1|489252|fgenesh2_kg.6__2386__AT5G23903.1 512 8e-145 > Ahg489252 jgi|Araly1|489252|fgenesh2_kg.6__2386__AT5G23903.1 Length=435 Score = 512 bits (277), Expect = 8e-145 Identities = 393/444 (89%), Gaps = 27/444 (6%) Strand=Plus/Plus Query 1 ATGTCTCGTGTCCTCCTCTTTCTCTTCATCTTTTCTTTATCGGTTTTGGTTGGATCAATC 60 |||||||||||||| | |||| | |||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGTCTCGTGTCCT-C-CTTT-TGTTCATCTTTTCTTTGTCGGTTTTGGTTGGATCAATC 57 Query 61 AATGGACGGTCATGTGGATCATCGACGCCCACTTCAGAGGATATGTAC-AAAAAGCAGAT 119 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 58 AATGGACGATCATGTGGATCATCGACGCCCACTTCAGAGGATATGTACCAAAAA-CAGAT 116 Query 120 GGAAAG-GTCCGAGGAATCAGCACG-T-GAAATGGGAAGGATTGGTTTGGAGTGTGAACC 176 |||||| | |||| ||||||||| | | ||| |||||||||||||||||||||||||||| Sbjct 117 GGAAAGAG-CCGACGAATCAGCA-GATCGAA-TGGGAAGGATTGGTTTGGAGTGTGAACC 173 Query 177 CGAAGGGTACACAGGTGGTTCAGGCAACACGAACT-CT--GTTGGTGATATGATTCTCGG 233 | ||||||||||||||||||||||||||||||||| || ||||||| || |||||||| Sbjct 174 CCAAGGGTACACAGGTGGTTCAGGCAACACGAACTACTCTGTTGGTGCTACCATTCTCGG 233 Query 234 CTTCTTCATTCTTTTCTTTATTGTTGGTGCCCCCATTATGATCTGTCTCGCGTGTGTTCG 293 ||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| | || Sbjct 234 GTTCTTCATTCTTTTCTTTATTTTTGGTGCCCCCATTGTGATCTGTCTCGCCTGTATCCG 293 Query 294 GAGACAACAGGCTATAAACGCAGCCAATCTCAATAACGTTTCCGGTCAAGTGGTAGGAGC 353 ||| ||| |||||||||||||||||||||||||||| ||||| |||||||||| ||||| Sbjct 294 GAGGCAAAAGGCTATAAACGCAGCCAATCTCAATAATGTTTCTAGTCAAGTGGTGGGAGC 353 Query 354 TCATG-G----A---A-CTGATCTCAAGTCTTATCCTCAGA-C-AGGGACCGTCCAAAAG 402 ||||| | | | ||||||||||||||||||| || | | |||||||||||| Sbjct 354 TCATGTGGCTCATGGAACTGATCTCAAGTCTTATCCGG-GAACCAAC-ACCGTCCAAAAG 411 Query 403 GGAGATCCCAATTACCAAGTTTGA 426 |||||||||||||||||||||||| Sbjct 412 GGAGATCCCAATTACCAAGTTTGA 435 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17589726529 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5