BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23903.1
Length=485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489252 jgi|Araly1|489252|fgenesh2_kg.6__2386__AT5G23903.1 512 8e-145
> Ahg489252 jgi|Araly1|489252|fgenesh2_kg.6__2386__AT5G23903.1
Length=435
Score = 512 bits (277), Expect = 8e-145
Identities = 393/444 (89%), Gaps = 27/444 (6%)
Strand=Plus/Plus
Query 1 ATGTCTCGTGTCCTCCTCTTTCTCTTCATCTTTTCTTTATCGGTTTTGGTTGGATCAATC 60
|||||||||||||| | |||| | |||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTCTCGTGTCCT-C-CTTT-TGTTCATCTTTTCTTTGTCGGTTTTGGTTGGATCAATC 57
Query 61 AATGGACGGTCATGTGGATCATCGACGCCCACTTCAGAGGATATGTAC-AAAAAGCAGAT 119
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 58 AATGGACGATCATGTGGATCATCGACGCCCACTTCAGAGGATATGTACCAAAAA-CAGAT 116
Query 120 GGAAAG-GTCCGAGGAATCAGCACG-T-GAAATGGGAAGGATTGGTTTGGAGTGTGAACC 176
|||||| | |||| ||||||||| | | ||| ||||||||||||||||||||||||||||
Sbjct 117 GGAAAGAG-CCGACGAATCAGCA-GATCGAA-TGGGAAGGATTGGTTTGGAGTGTGAACC 173
Query 177 CGAAGGGTACACAGGTGGTTCAGGCAACACGAACT-CT--GTTGGTGATATGATTCTCGG 233
| ||||||||||||||||||||||||||||||||| || ||||||| || ||||||||
Sbjct 174 CCAAGGGTACACAGGTGGTTCAGGCAACACGAACTACTCTGTTGGTGCTACCATTCTCGG 233
Query 234 CTTCTTCATTCTTTTCTTTATTGTTGGTGCCCCCATTATGATCTGTCTCGCGTGTGTTCG 293
||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| | ||
Sbjct 234 GTTCTTCATTCTTTTCTTTATTTTTGGTGCCCCCATTGTGATCTGTCTCGCCTGTATCCG 293
Query 294 GAGACAACAGGCTATAAACGCAGCCAATCTCAATAACGTTTCCGGTCAAGTGGTAGGAGC 353
||| ||| |||||||||||||||||||||||||||| ||||| |||||||||| |||||
Sbjct 294 GAGGCAAAAGGCTATAAACGCAGCCAATCTCAATAATGTTTCTAGTCAAGTGGTGGGAGC 353
Query 354 TCATG-G----A---A-CTGATCTCAAGTCTTATCCTCAGA-C-AGGGACCGTCCAAAAG 402
||||| | | | ||||||||||||||||||| || | | ||||||||||||
Sbjct 354 TCATGTGGCTCATGGAACTGATCTCAAGTCTTATCCGG-GAACCAAC-ACCGTCCAAAAG 411
Query 403 GGAGATCCCAATTACCAAGTTTGA 426
||||||||||||||||||||||||
Sbjct 412 GGAGATCCCAATTACCAAGTTTGA 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17589726529
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5