BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23910.1
Length=2374
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489253 jgi|Araly1|489253|fgenesh2_kg.6__2387__AT5G23910.1 1247 0.0
Ahg944024 jgi|Araly1|944024|scaffold_700253.1 435 1e-120
Ahg936288 jgi|Araly1|936288|scaffold_500479.1 385 1e-105
Ahg923205 jgi|Araly1|923205|scaffold_104486.1 364 1e-99
Ahg894640 jgi|Araly1|894640|Al_scaffold_0006_2636 324 2e-87
> Ahg489253 jgi|Araly1|489253|fgenesh2_kg.6__2387__AT5G23910.1
Length=2456
Score = 1247 bits (675), Expect = 0.0
Identities = 976/1109 (88%), Gaps = 70/1109 (6%)
Strand=Plus/Plus
Query 1294 GAAATCTGTTCGTCGA-TTACTGTTACAGATTTTCAATCTTCTTTGGTAGAAGAGGAATA 1352
|||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1388 GAAATCTGTTCGTC-ATTTACTGTTACAGATTCTCAATCTTCTTTGGTAGAAGAGGAATA 1446
Query 1353 TTCTCTGGCTTTTTCAAG---T----T---C-T---A-CGGT--A---GCCA--TGGAA- 1389
|||||||||||| ||||| | | | | | |||| | ||| || ||
Sbjct 1447 TTCTCTGGCTTTCTCAAGTTATGCAGTAGCCATGGAACCGGTAAATTTTCCATCTGCAAC 1506
Query 1390 --C-CGGGCTATTCAAATGGTGCATCTTTAAGCTCAGAAGCTATTTACACTACAGATAAG 1446
| | |||||||||| | |||||||||||||||||||||| || ||| |||||| |||
Sbjct 1507 TTCTCTGGCTATTCAACTAATGCATCTTTAAGCTCAGAAGCTGTTGACATTACAGAAAAG 1566
Query 1447 GAGACACCCCGGAAACAAGAGGAAATGTTTGCTGGAGCCACTCATTGTGATGATGCTTTT 1506
||||||||| ||||||| |||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1567 GAGACACCCTGGAAACATGAGGAAATTTTTTCAGGAGCCACTCATTGTGATGATGCTTTT 1626
Query 1507 GTAGACAAAGCACAAATAGTAGAGAGAGATGAAAACAATTCAGTCATTGAAGAAGATCTG 1566
| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1627 GCAGACAAAGCACAAATAGTAGAGAGAGATGAAAACAATTCAGTCATT---GACGATCTG 1683
Query 1567 ACTCTGGTTATTGATGAAGGTGAAAATCTGGACAAAGAAAACAACAGTTTGCTAGCAAAT 1626
||||||||||| || |||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 1684 GCTCTGGTTATTAATAAAGGTGAAAACCTGGACAAAGAGAACAACAGTTTGCTAGCCAAT 1743
Query 1627 GAAACTGCATCACCACCCCTCAGCATGCGACTTCAAGAACTATCAAACAATTTGAAGTCG 1686
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1744 GAAACTGCATCACCACCGCTTAGCATGCGACTTCAAGAACTATCAAACAATTTGAAGTCG 1803
Query 1687 ATATGCAAATTCTCAAACCAACTATCAGTACCTGAGAAACATCAAACTCCCTTAACTATA 1746
||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1804 ATATGCAAAATCTCAAACCAACTATCAGTACCTGAGAAATATCAAAGTCCCTTAACTATA 1863
Query 1747 TTACAGGCGGAAGAAGCATCAGAGCACAGTGATATTACTGCTGAAGCTGCTGTTAGTATA 1806
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 1864 TTACAGGCGGACGAAGCATCAGAGCACAGCGATATTACTGCTGAAGCTGCTGTCAGTGGA 1923
Query 1807 GAACTAAGAACGCCGGAGAAAACTATGCCTTCGAACATTGGCTGCAGTCCTTGGAAGACA 1866
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1924 GAACTAAGAACACCGGAGAGAACTATGCCTTCGAACATTGGCTGCAGTCCTTGGAAGGCA 1983
Query 1867 TATAGCGCACACAGCTCTAAATTGAAGAATTCTGCTGTTGGAGAGTACCTCAAGTTCATA 1926
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1984 TATAGCGCACACAGCTCTAAATTGAAGAACTCTGCTGTTGGAGAATACCTCAAGTTCATA 2043
Query 1927 AACACAGCTGGAAAGGAAGATCTAAAGAAGTTAAAGGGTATTGGGGACAAGAGAGCAGCT 1986
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2044 AACACAGCTGGAAAGGAAGATCTAAAGAAGTTAAAGGGTATTGGCGACAAGAGAGCAGCG 2103
Query 1987 TACATAGTTGAGCTCCGCGAAGAATCTCCATTTAAAACGCTTGATGATTTGCAAAGTATC 2046
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2104 TACATAGTTGAGCTCCGCGAAGAATCTCCATTTAAAACGGTTGATGATTTGAAAAGTATC 2163
Query 2047 GGACTCTCAGCAAAACAGGTTAATGGATTGCTGAAAAAAGAGATCGGGGAGATTTTCTAG 2106
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct 2164 GGACTCTCAGCAAAACAGGTTAAGGGATTGCTGAAAAAAGAAATCGGGGAGATTTTCGAG 2223
Query 2107 TAGTTGAGGGACATTCTCTACGGTTGTTCACAACAAATGTATCTGAAAATATTTATGAAG 2166
||||| || | | |||| | | | ||||||| ||||||||||||
Sbjct 2224 TAGTT------CA--C---A---------ACAA-ATA-G-ATCTGAAGATATTTATGAAG 2260
Query 2167 GTTTCTAGAGATTGCGAGGCAACACGATGTTGCTTCTAAGATTTCAAAGTTCTATATAGG 2226
||||| ||| || | | ||||| |||||||||||||||| ||| ||||||||||
Sbjct 2261 GTTTC--GAG---GC-A---A-CACGACATTGCTTCTAAGATTTCGAAGGTCTATATAGG 2310
Query 2227 AAGGCTAAGTTGTTGAATGTGTAATGCGTGTTACTATGAGAACTTAATTTATGGTTACAA 2286
| ||||||||||||||||||||||| ||||||| || |||| |||||||| ||||| |||
Sbjct 2311 A-GGCTAAGTTGTTGAATGTGTAATTCGTGTTATTACGAGATCTTAATTTGTGGTTTCAA 2369
Query 2287 TACTTTAAATTCAATTTGTGTCGTACTGTCCAAA-ACTTTGGGT-ATTTCAAAGGCAATG 2344
|||||| |||| |||||||||||||||||| ||| | ||||||| |||||||||||||||
Sbjct 2370 TACTTTCAATTGAATTTGTGTCGTACTGTCTAAAGA-TTTGGGTTATTTCAAAGGCAATG 2428
Query 2345 TGAAGTAGTATCAAATT-CCATTTTTATA 2372
||||||||||||||||| || |||| |||
Sbjct 2429 TGAAGTAGTATCAAATTTCC-TTTTCATA 2456
Score = 1149 bits (622), Expect = 0.0
Identities = 735/790 (93%), Gaps = 5/790 (1%)
Strand=Plus/Plus
Query 513 TCAGGTACCTGTGAAGTCACTCTCAGAATTCCAGAACTTATATTTTGGTTTCAAGAAATC 572
|||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||
Sbjct 549 TCAGGTACCTGTGAAGTCGCTCTCAGAATTCCAGAACTTATATTATGGTCTCAAGAAATC 608
Query 573 CCAGAAGCTGACCAGTGACCTTCCAACTAGGAGTCATAAAGGTGTGATGATACATGTTAC 632
|||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 609 CCAGAAGCTGACCAGTGACCCTCCAGTTAGGAGTCATAAAGGTGTGATGATACACGTTAC 668
Query 633 TACTGGAAACGCCAATTCAGGCTCCCTTGGGAGAATGAACTTTCTTGATATGGCAGGATA 692
||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 669 CACTGGCAACGCCAATCCAGGCTCCCTTGGGAGGATGAACTTTCTTGATATGGCAGGATA 728
Query 693 TGAGGATTCCAGGAAACAAAACAGTGCTTTAGGTCCTCTAGAGATTGCTAGAGTTAATAA 752
|||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||
Sbjct 729 TGAGGATTCCAGGAAACAAAACAGTGCTCTAGCTCCTCTAGAGATTGCCAGAATTAATAA 788
Query 753 GTCGATATATGCTTTACAGAATGTCATGTATGCTCTAAACGCAAATGAATCCCATGTGCC 812
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 789 GTCGATATATGCTTTACAGAATGTCATGTATGCTCTCAACACAAATGAATCCCATGTGCC 848
Query 813 ATATCGGGAGAGCAAACTCACTCGTATGCTGAAAGATTGTTTAAAAGGATCCAACATAAC 872
|||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |||
Sbjct 849 ATATCGGGAGAGCAAACTCACTCGAATGCTGAAAGATTGTTTTAAAGGATGCAACAGAAC 908
Query 873 TTTGCTAATCACATGTTTGCCCCGGGAATTTAGCCAAGACTCCTTTTACATGCTAAACTT 932
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 909 GCTGCTGATCACATGTTTGCCCCGGAAATTTAGCCAAGACTCCTTTTACATGCTAAACTT 968
Query 933 AGCATCACGGATCTGTCTAGGCGGTAACCGAGCCATCACTAATCCTACCAAGAAGAAGAT 992
|||||||||||||||||||||| ||||||||||||| | ||||||||| |||||||||||
Sbjct 969 AGCATCACGGATCTGTCTAGGCAGTAACCGAGCCATGAATAATCCTACTAAGAAGAAGAT 1028
Query 993 CAATGGTC-TCGATAGATCTGTTTCATTATCCTCAGCCGCTCAAAGGAGACAGACACCTT 1051
||| |||| | || |||||| |||||||||| || |||||||||||||||||||||||||
Sbjct 1029 CAACGGTCCT-GAAAGATCTATTTCATTATCATCTGCCGCTCAAAGGAGACAGACACCTT 1087
Query 1052 TGACTATGTCTGCTGCTTCTAGAAAACAGACAGTGCTGAGGGGAAATGTGACAGAGAGAA 1111
||| | |||||||| ||||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct 1088 TGAATGTGTCTGCTACTTCTAGAAAACAGACAATGCTAAGGGGAAGTGTGACAGAGAGAA 1147
Query 1112 AGACTAAAATCAACACTGCTACTTCTGCAATTAAAGCAAGGAAACTGTTCGGTGAAGCAA 1171
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1148 AGACTAAAATCAACAATGCTGCTTCTGCAATTAAAGCAAGGAAACTGTTCGGTGAAGCAA 1207
Query 1172 ATGATTCGGTGAAATGTAAAAATAGCTCTAAGAAGGTGGAAGGCAAAGCAAAGA-TGGTT 1230
| ||||||||||||||||||||||||||||||||| ||||||||||| ||| || ||| |
Sbjct 1208 ACGATTCGGTGAAATGTAAAAATAGCTCTAAGAAGATGGAAGGCAAATCAA-GAATGGCT 1266
Query 1231 CTGAAAAAGGGAATCTCCACTTCAAAGGTTGTCTTGAGCGTTCAGGCCTCTTCACCTAAA 1290
|||||||| | ||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1267 CTGAAAAATGTAATCTCCACTTCAAAGGTTGTCTCGAGCATTCAGGCCTCTTCACCTAAA 1326
Query 1291 GAAG-AAATC 1299
|||| |||||
Sbjct 1327 GAAGTAAATC 1336
Score = 706 bits (382), Expect = 0.0
Identities = 474/519 (91%), Gaps = 4/519 (1%)
Strand=Plus/Plus
Query 1 ATGACGAGCCATGGCCGGAAAGTAGTCCGGGTGGTGGCTAGGGTCAAGCCATCGACGGAT 60
|||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGAAGAGCCATGGCCGGAAAGTGGTCCGGGTGGTGGCTAGGGTCAAGCCTTCGACGGAT 60
Query 61 CTGGCATCAACGAAATCAATTTCGGTTCAGAAACCGATGGGTGATGATTCAGAGACTGTT 120
|||| |||||||| |||||| |||||||| || ||| ||||||| |||||||||| ||||
Sbjct 61 CTGGTATCAACGAGATCAATATCGGTTCACAAGCCGCTGGGTGAAGATTCAGAGAGTGTT 120
Query 121 ACAATTTCGTTCGGAGCTCAATTCGCTGGATCGAAAGATTCATATAGATTGGACTATTGC 180
| |||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 121 TCGATTTCGTTTGGAGCTCAATTCGCTGGTTCGAAAGATTCATATAAATTGGACTATTGC 180
Query 181 TACGAAGAAAATGAAACTACTGGTTCAATTCTCACTAAGGAGATAAAGCCTCTTATATCT 240
|| |||||||||||||| || ||||||||||||| |||||||||||||||||||| |||
Sbjct 181 TATGAAGAAAATGAAACCACAAGTTCAATTCTCACAAAGGAGATAAAGCCTCTTATCTCT 240
Query 241 ACTGTCTTTGAGGGTAAAGATGCGAATGTCATCGCCCACGGAGCAAGAAATAGTGGTAAA 300
|||||||||||||||||||||||||||||||| ||||| ||||| |||||| | || |||
Sbjct 241 ACTGTCTTTGAGGGTAAAGATGCGAATGTCATAGCCCAAGGAGCTAGAAATGGCGGAAAA 300
Query 301 ACACATCTGATACAGGGAAATGAGAGGGAACTTGGTTTAGCTGTCCTTACAATGTCTGAG 360
|||||||| |||||||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 301 ACACATCTAATACAGGGAAATGAGAGGGAGCTTGGTTTAACTGTTCTTACAATGTCTGAG 360
Query 361 ATGTTATCCATGGCTGAGGAAAGAGGAGACGCGA-TTTTTGTATCAGTTTACGAGGTGTC 419
||| |||||||||||||||||||||||||| | | ||| |||||||||||||||||| ||
Sbjct 361 ATGCTATCCATGGCTGAGGAAAGAGGAGACTC-AGTTTCTGTATCAGTTTACGAGGTTTC 419
Query 420 TCAAGAAACTGTGTATGACCTGTTAGACCAAGAGAAGAGAGTGGTTAG-TGTATTAGAAG 478
||||||||| |||||||||||||||| |||||||||| |||||||| | |||| | ||||
Sbjct 420 TCAAGAAACCGTGTATGACCTGTTAGGCCAAGAGAAGCGAGTGGTT-GCTGTACTGGAAG 478
Query 479 GTGCACAAGGGAAAATTCAACTAAAGGGACTTTCTCAGG 517
|||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTGCACAAGGGAAAATTCAACTAAAGGGACTTTCTCAGG 517
> Ahg944024 jgi|Araly1|944024|scaffold_700253.1
Length=1055
Score = 435 bits (235), Expect = 1e-120
Identities = 357/412 (87%), Gaps = 23/412 (6%)
Strand=Plus/Plus
Query 151 TCGAAAGATTCATATAGATTGGACTATTGCTACGAAGAAAA-TGAAACTACTGGTTCAAT 209
|||||| ||||||||| |||||||||||||||| ||||||| ||| | || ||||||||
Sbjct 188 TCGAAA-ATTCATATAAATTGGACTATTGCTACAAAGAAAACAGAATC-ACAGGTTCAAT 245
Query 210 TCTCA-CTAAGGAGATAAAGCCTCTTATATCTACTGTCTTTGAGGGTAAAGATGCGAATG 268
||| | | |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 246 TCT-ATCAAAGGAGATAAAGCCTCTTATCTCTACTGTCTTTGAGGGTAAAGATGCTAATG 304
Query 269 TCATCGCCCACGGAGCAAGAAATAGTGGTAAAACACATCTGATACA-G----G---G-AA 319
||||||||||| ||||| ||||| | | ||||||||||| ||||| | | | ||
Sbjct 305 TCATCGCCCACAGAGCACGAAATTGCAGAAAAACACATCTCATACATGTATTGAAAGCAA 364
Query 320 ----ATGAGAGGGAACTTGGTTTAGCTGTCCTTACAATGTCTGAGATGTTATCCATGGCT 375
|| | ||||| ||||||||| | || ||||||||||||||||| |||||||||||
Sbjct 365 TCCCATTA-AGGGAGCTTGGTTTAACCGTTCTTACAATGTCTGAGATACTATCCATGGCT 423
Query 376 GAGGAAAGAGGAGACGCGA-TTTTTGTATCAGTTTACGAGGTGTCTCAAGAAACTGTGTA 434
||||||||||||||| | | ||| |||||||||||||||||| ||||| ||||| |||||
Sbjct 424 GAGGAAAGAGGAGACTC-AGTTTCTGTATCAGTTTACGAGGTTTCTCAGGAAACCGTGTA 482
Query 435 TGACCTGTTAGACCAAGAGAAGAGAGTGGTTAG-TGTATTAGAAGGTGCACAAGGGAAAA 493
|||||| ||||||||||||||| |||||||| | |||| | |||||||||||||||||||
Sbjct 483 TGACCTTTTAGACCAAGAGAAGCGAGTGGTT-GCTGTACTGGAAGGTGCACAAGGGAAAA 541
Query 494 TTCAACTAAAGGGACTTTCTCAGGTACCTGTGAAGTCACTCTCAGAATTCCA 545
||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 542 TTCAACTAAAGGGACTTCCTCAGGTACCTGTGAAGTCACTCTCAGAATTCCA 593
Score = 353 bits (191), Expect = 3e-96
Identities = 240/262 (92%), Gaps = 9/262 (3%)
Strand=Plus/Plus
Query 607 CATAAAGGTGTGATGATACATGTTACTACTGGAAACGCCAATTCAGGCTCCCTTGGGAGA 666
|||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||||||
Sbjct 592 CATAAAGGTGTGATGATACATGCTACCACTGGCAACGCCAATCCAGGCTCCCTTGGGAGG 651
Query 667 ATGAACTTTCTTGATATGGCAGGATATGAGGATTCCAGGAAACAAAACAGTGCTTTAGGT 726
|||||||||||||||||||| | |||||||||||||||||||||||| ||| |
Sbjct 652 ATGAACTTTCTTGATATGGC--------A-GATTCCAGGAAACAAAACAGTGCTCTAGCT 702
Query 727 CCTCTAGAGATTGCTAGAGTTAATAAGTCGATATATGCTTTACAGAATGTCATGTATGCT 786
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 703 CCTCTAGAGATTGCCAGAGTTAATAAGTTGATATATGCTTTACAGAATGTCATGTATGCT 762
Query 787 CTAAACGCAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGTATGCTGAAA 846
|| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 763 CTCAACGGAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGAATGCTGAAA 822
Query 847 GATTGTTTAAAAGGATCCAACA 868
|||||||||||||||| |||||
Sbjct 823 GATTGTTTAAAAGGATGCAACA 844
Score = 283 bits (153), Expect = 4e-75
Identities = 188/205 (92%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 935 CATCACGGATCTGTCTAGGCGGTAACCGAGCCATCACTAATCCTACCAAGAAGAAGATCA 994
||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct 851 CATCACGGATCTGTCTAGGTAGTAACCGAGCCATGACTAATCCTACTAAGAAGAAGATCT 910
Query 995 ATGGTCTCGATAGATCTGTTTCATTATCCTCAGCCGCTCAAAGGAGACAGACACCTTTGA 1054
| ||||| || |||||| ||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 911 ACGGTCTTGAAAGATCTATTTCATTATGCTCTGCCGCTCAAAGGAGACAGACACCTTTGA 970
Query 1055 CTATGTCTGCTGCTTCTAGAAAACAGACAGTGCTGAGGGGAAATGTGACAGAGAGAAA-G 1113
|| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 971 CTGTGTCTGCTACTTCTAGAAAACAGACAGTGCTAAGGGGAAATGTGACAGAGAGAAAAG 1030
Query 1114 ACTAAAATCAACACTGCTACTTCTG 1138
||||||||||||| |||| ||||||
Sbjct 1031 ACTAAAATCAACATTGCTGCTTCTG 1055
> Ahg936288 jgi|Araly1|936288|scaffold_500479.1
Length=935
Score = 385 bits (208), Expect = 1e-105
Identities = 325/378 (86%), Gaps = 22/378 (6%)
Strand=Plus/Plus
Query 157 GATTCATATAGATTGGACTATTGCTACGAAGAAAA-TGAAACTACTGGTTCAATTCTCA- 214
|||||||||| |||||||||||||||| ||||||| ||| | || ||||||||||| |
Sbjct 133 GATTCATATAAATTGGACTATTGCTACAAAGAAAACAGAATC-ACAGGTTCAATTCT-AT 190
Query 215 CTAAGGAGATAAAGCCTCTTATATCTACTGTCTTTGAGGGTAAAGATGCGAATGTCATCG 274
| || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 191 CAAAAGAGATAAAGCCTCTTATCTCTACTGTCTTTGAGGGTAAAGATGCTAATGTCATCG 250
Query 275 CCCACGGAGCAAGAAATAGTGGTAAAACACATCTGATACA-G----G---G-AA----AT 321
||||| ||||| ||||| | || |||||||||| ||||| | | | || ||
Sbjct 251 CCCACAGAGCACGAAATTGCGGAAAAACACATCCCATACATGTATTGAAAGCAATCCCAT 310
Query 322 GAGAGGGAACTTGGTTTAGCTGTCCTTACAATGTCTGAGATGTTATCCATGGCTGAGGAA 381
| ||||| ||||||||| | || |||||||||||||||||| |||||||||||||||||
Sbjct 311 TA-AGGGAGCTTGGTTTAACCGTTCTTACAATGTCTGAGATGATATCCATGGCTGAGGAA 369
Query 382 AGAGGAGACGCGA-TTTTTGTATCAGTTTACGAGGTGTCTCAAGAAACTGTGTATGACCT 440
||||||||| | | ||| |||||||||||||||||| ||||||||||| |||||||||||
Sbjct 370 AGAGGAGACTC-AGTTTCTGTATCAGTTTACGAGGTTTCTCAAGAAACCGTGTATGACCT 428
Query 441 GTTAGACCAAGAGAAGAGAGTGGTTAG-TGTATTAGAAGGTGCACAAGGGAAAATTCAAC 499
||||||||||||||| |||||||| | |||| | |||||||||||||||||||||||||
Sbjct 429 TTTAGACCAAGAGAAGCGAGTGGTT-GCTGTACTGGAAGGTGCACAAGGGAAAATTCAAC 487
Query 500 TAAAGGGACTTTCTCAGG 517
||||||||||| ||||||
Sbjct 488 TAAAGGGACTTCCTCAGG 505
Score = 346 bits (187), Expect = 5e-94
Identities = 234/255 (92%), Gaps = 9/255 (4%)
Strand=Plus/Plus
Query 614 GTGTGATGATACATGTTACTACTGGAAACGCCAATTCAGGCTCCCTTGGGAGAATGAACT 673
||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||
Sbjct 509 GTGTGATGATACATGTTACCACTGGCAACGCCAATCCAGGCTCCCTTGGGAGGATGAACT 568
Query 674 TTCTTGATATGGCAGGATATGAGGATTCCAGGAAACAAAACAGTGCTTTAGGTCCTCTAG 733
||||||||||||| | |||||||||||||||||||||||| ||| ||||||||
Sbjct 569 TTCTTGATATGGC--------A-GATTCCAGGAAACAAAACAGTGCTCTAGCTCCTCTAG 619
Query 734 AGATTGCTAGAGTTAATAAGTCGATATATGCTTTACAGAATGTCATGTATGCTCTAAACG 793
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 620 AGATTGCCAGAGTTAATAAGTTGATATATGCTTTACAGAATGTCATGTATGCTCTCAACG 679
Query 794 CAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGTATGCTGAAAGATTGTT 853
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 680 GAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGAATGCTGAAAGATTGTT 739
Query 854 TAAAAGGATCCAACA 868
||||||||| |||||
Sbjct 740 TAAAAGGATACAACA 754
Score = 244 bits (132), Expect = 2e-63
Identities = 161/175 (92%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 965 CCATCACTAATCCTACCAAGAAGAAGATCAATGGTCTCGATAGATCTGTTTCATTATCCT 1024
|||| ||||||||||| |||||||||||| | ||||| || |||||| ||||||||| ||
Sbjct 761 CCATGACTAATCCTACTAAGAAGAAGATCTACGGTCTTGAAAGATCTATTTCATTATGCT 820
Query 1025 CAGCCGCTCAAAGGAGACAGACACCTTTGACTATGTCTGCTGCTTCTAGAAAACAGACAG 1084
| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 821 CTGCCGCTCAAAGGAGACAGACACCTTTGACTGTGTCTGCTACTTCTAGAAAACAGACAG 880
Query 1085 TGCTGAGGGGAAATGTGACAGAGAGAAA-GACTAAAATCAACACTGCTACTTCTG 1138
|||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 881 TGCTAAGGGGAAATGTGACAGAGAGAAAAGACTAAAATCAACACTGCTGCTTCTG 935
> Ahg923205 jgi|Araly1|923205|scaffold_104486.1
Length=993
Score = 364 bits (197), Expect = 1e-99
Identities = 346/412 (84%), Gaps = 33/412 (8%)
Strand=Plus/Plus
Query 151 TCGAAAGATTCATATAGATTGGACTATTGCTAC-GAAGAAAA-TGAAACTACTGGTTCAA 208
|||||||||||||||| |||||||||||||||| || |||| ||| | || |||||||
Sbjct 136 TCGAAAGATTCATATAAATTGGACTATTGCTACAAAAAAAAACAGAATC-ACAGGTTCAA 194
Query 209 TTCTCA-CTAAGGAGATAAAGCCTCTTATATCTACTGTCTTTGAGGGTAAAGATGCGAAT 267
|||| | | |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 195 TTCT-ATCAAAGGAGATAAAGCCTCTTATCTCTACTGTCTTTGAGGGTAAAGATGCTAAT 253
Query 268 GTCATCGCCCACGGAGCAAGAAATAGTGGTAAAACACATCTGATACA-G----G---G-A 318
|||||||||||||||||||||||| | || ||||||||||| ||||| | | | |
Sbjct 254 GTCATCGCCCACGGAGCAAGAAATTGCGGAAAAACACATCTCATACATGTATTGAAAGCA 313
Query 319 A----ATGAGAGGGAACTTGGTTTAGCTGTCCTTACAATGTCTGAGATGTTATCCATGGC 374
| || | ||||| ||||||||| | || |||||||||||||||||| ||||||||||
Sbjct 314 ATCCCATTA-AGGGAGCTTGGTTTAACCGTTCTTACAATGTCTGAGATGCTATCCATGGC 372
Query 375 TGAGGAAAGAGGAGACGCGATTTTTGTATCAGTTTACGAGGTGTCTCAAGAAACTGTGTA 434
| | | | | ||| |||||||||||||||||| ||||| ||||| |||||
Sbjct 373 T---------GTA-TC-AG-TTTCTGTATCAGTTTACGAGGTTTCTCAGGAAACCGTGTA 420
Query 435 TGACCTGTTAGACCAAGAGAAGAGAGTGGTTAG-TGTATTAGAAGGTGCACAAGGGAAAA 493
| |||| ||||||||||||||| |||||||| | |||| | |||||||||||||||||||
Sbjct 421 TAACCTTTTAGACCAAGAGAAGCGAGTGGTT-GCTGTACTGGAAGGTGCACAAGGGAAAA 479
Query 494 TTCAACTAAAGGGACTTTCTCAGGTACCTGTGAAGTCACTCTCAGAATTCCA 545
||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 480 TTCAACTAAAGGGACTTCCTCAGGTACCTATGAAGTCACTCTCAGAATTCCA 531
Score = 348 bits (188), Expect = 1e-94
Identities = 239/262 (91%), Gaps = 9/262 (3%)
Strand=Plus/Plus
Query 607 CATAAAGGTGTGATGATACATGTTACTACTGGAAACGCCAATTCAGGCTCCCTTGGGAGA 666
|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||
Sbjct 530 CATAAAGGTGTGATGATACATGTTACCACTGGCAACGCCAATCCAGGCTCCCTTGGGAGG 589
Query 667 ATGAACTTTCTTGATATGGCAGGATATGAGGATTCCAGGAAACAAAACAGTGCTTTAGGT 726
|||||||||||||||||||| | |||||||||||||||||||||||| ||| |
Sbjct 590 ATGAACTTTCTTGATATGGC--------A-GATTCCAGGAAACAAAACAGTGCTCTAGCT 640
Query 727 CCTCTAGAGATTGCTAGAGTTAATAAGTCGATATATGCTTTACAGAATGTCATGTATGCT 786
|||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||
Sbjct 641 CCTCTAGAGATTGCCAGAGTTAATACTTTGATATATGCTTTACAGAATGTCATGTATGCT 700
Query 787 CTAAACGCAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGTATGCTGAAA 846
|| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 701 CTCAACGGAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGAATGCTGAAA 760
Query 847 GATTGTTTAAAAGGATCCAACA 868
|||||||||||||||| |||||
Sbjct 761 GATTGTTTAAAAGGATGCAACA 782
> Ahg894640 jgi|Araly1|894640|Al_scaffold_0006_2636
Length=735
Score = 324 bits (175), Expect = 2e-87
Identities = 235/262 (90%), Gaps = 12/262 (5%)
Strand=Plus/Plus
Query 607 CATAAAGGTGTGATGATACATGTTACTACTGGAAACGCCAATTCAGGCTCCCTTGGGAGA 666
||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||
Sbjct 283 CATAAAGGTGTGATGATACATTTTACCACTGGCAACGCCAATCCAGGCTCCCTTGGGAGG 342
Query 667 ATGAACTTTCTTGATATGGCAGGATATGAGGATTCCAGGAAACAAAACAGTGCTTTAGGT 726
|||||||||||||||||||| | ||||||||||||||||||||| ||| |
Sbjct 343 ATGAACTTTCTTGATATGGC-----------A-TCCAGGAAACAAAACAGTGCTCTAGCT 390
Query 727 CCTCTAGAGATTGCTAGAGTTAATAAGTCGATATATGCTTTACAGAATGTCATGTATGCT 786
|||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||
Sbjct 391 CCTCTAGAGATTGCCAGAGTTAATACTTTGATATATGCTTTACAGAATGTCATGTATGCT 450
Query 787 CTAAACGCAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGTATGCTGAAA 846
|| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 451 CTCAACGGAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGAATGCTGAAA 510
Query 847 GATTGTTTAAAAGGATCCAACA 868
|||||||||||||||| |||||
Sbjct 511 GATTGTTTAAAAGGATGCAACA 532
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 518 TACCTGTGAAGTCACTCTCAGAATTCCA 545
||||||||||||||||||||||||||||
Sbjct 257 TACCTGTGAAGTCACTCTCAGAATTCCA 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89435895260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5