BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23930.1
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489254 jgi|Araly1|489254|fgenesh2_kg.6__2388__AT5G23930.1 1941 0.0
> Ahg489254 jgi|Araly1|489254|fgenesh2_kg.6__2388__AT5G23930.1
Length=1365
Score = 1941 bits (1051), Expect = 0.0
Identities = 1266/1369 (92%), Gaps = 17/1369 (1%)
Strand=Plus/Plus
Query 1 ATGTTTTCATTAATACTCCATGGTGGAAGAAGGTCACGCGAGTTACATCAATGGCGGAAT 60
|||| |||||| |||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGTATTCATTGATACTCCAAGGTGGAAGAAGGTCACGCGAGTTACATCAATGGCAGAAT 60
Query 61 C------TGAATCTTCTTCTCCAAAACTCCTCTGCTTTCACTGAATCGTTCTCTTCCGTT 114
| |||||||||||||||||||| |||| |||||||||||||||||||||| |||
Sbjct 61 CGAGTAATGAATCTTCTTCTCCAAAACGGCTCTACTTTCACTGAATCGTTCTCTTCTGTT 120
Query 115 GTTACTACTACTAAAGATCTAAGTCTTGAAGATGAACGAAAGAGGAAAACTTTCACAGTC 174
||| |||| |||||||||||||| ||||||||||| |||||||||| ||||||||||||
Sbjct 121 GTTGCTACCGCTAAAGATCTAAGTTTTGAAGATGAAAGAAAGAGGAAGACTTTCACAGTC 180
Query 175 TCTTACCTTATTGATTCATTAGGGTTAACTACAAAACTCGCTGAATCAATCTCAATGAAA 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTTACCTTATTGATTCATTAGGGTTAACTACAAAACTCGCTGAATCAATCTCAATGAAA 240
Query 235 GCTAACTTCGATGAAAAAGGTAATCCAGATTCAGTGCTT-AAACT-CTTAAGAAGCTATG 292
||||| ||||||||||||||||||||||||||||| ||| ||||| || | |||||||||
Sbjct 241 GCTAATTTCGATGAAAAAGGTAATCCAGATTCAGT-CTTGAAACTTCT-ACGAAGCTATG 298
Query 293 GATTCAAAGATTCTCAAATCTCAAGTATTATTTCCACTTACCCACGATTTCTCATTGAGA 352
|||||||||||| ||||||||||||||| ||| | ||||||||||||||||| ||||||
Sbjct 299 GATTCAAAGATTGTCAAATCTCAAGTATCATTGCTACTTACCCACGATTTCTTGTTGAGA 358
Query 353 ATCCTGAGAAAACTCTTCGTGCTAAACTTCATTTCTTGAAGCTTAACGGAGCTTCAAGCT 412
|||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 359 GTCCTGAGAAATCTCTTCGTGCTAAGCTTCATTTCTTGAAGCTAAATGGAGCTTCAAGCT 418
Query 413 CTGAGCTTACAGAGATTGTTTCAAAAGTTCCTAAGATCTTGGGAAAGAGAGGAGGGAAAT 472
|||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||||||||
Sbjct 419 CTGAGCTTACTGAGATTGTTTCGAAAGTACCTAAAATCTTGGGGAAGAGAGGAGGGAAAT 478
Query 473 GGATTAGTCATTACTATGATTATGTCAAAGAGATTTTGCAAGATCAAGATTCTAGTTCTT 532
|||||| ||||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 479 GGATTATTCATTACTATGATTATGTCAAAGAGATCTTGCAAGATCAAGATACGAGTTCTT 538
Query 533 CTTCTTCCAAGAGAAAGCAGACGAATCGAAATCGAAATGTATCGGTTTTGAGAAAATTAG 592
|||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 539 CTTC--C-AAGAGAAAGCAGACGAATCGAAATCGAAATGTATCGGTTTTGAGAGAATTGG 595
Query 593 GAGTACCACAGAGACTGTTATTGAACTTGTTGATCTCTAGAGCTAAACCAGTTTGTGGTA 652
|||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 596 GAGTGCCTCAGAGACTGTTATTGAACTTGTTGATATCTAGAGCTAAACCAGTTTGTGGGA 655
Query 653 AAGAAAGATTTGAAGAATCGGTTAAGAAGATTGTTGAGATGGGTTTTGATCCGAAAAGTC 712
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 656 AAGAAAGATTTGAAGAATCGGTTAAGAAGATTGTTGAGATGGGTTTTGATCCAAAAAGTC 715
Query 713 CAAAGTTTGTTAATGCTTTGTATGTTTTCTATGAGCTTAGTGATAAGACTATAGAGGAGA 772
|||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 716 CAAAGTTTGTCAGTGCTTTGTATGTTTTCTATGATCTTAGTGATAAGACTATAGAGGAGA 775
Query 773 AAGTGAATGCTTATATAAGGTTAGGACTTAGTGTTA-ATGAAGTTTGGGCAGTTTTCAAG 831
||||||||||||||| ||||||||||||| | || |||||||||||||||||||||||
Sbjct 776 AAGTGAATGCTTATAAAAGGTTAGGACTTTCT-TTGGATGAAGTTTGGGCAGTTTTCAAG 834
Query 832 AAATGGCCTTTCTCTTTGAAATACTCTGAGAAGAATATAATTCAAAAGTTTGAGACTTTG 891
|||||||||||||||||||||||||| |||||||| || ||||| | |||||||||||||
Sbjct 835 AAATGGCCTTTCTCTTTGAAATACTCGGAGAAGAAGATTATTCAGACGTTTGAGACTTTG 894
Query 892 AAACGTGTTGGTCTAACGAAAGAAGAGGTCTGCTTAGTGGTTAAGAAGTACCCTGAATGT 951
||||| |||||||||| | |||||||||| |||||| ||||||||| |||||||||||||
Sbjct 895 AAACGGGTTGGTCTAAGGGAAGAAGAGGTATGCTTAATGGTTAAGAGGTACCCTGAATGT 954
Query 952 GTAGGGACTTCAGAGGAGAAGATAGTGAAGTCAGTTAAAACTTTTCTTGAGCTAGGATTT 1011
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 955 GTAGGGACTTCAGAGGAGAAGATAGTGAAGTCAGTTGAAACTTTTCTTGAGTTAGGATTC 1014
Query 1012 ACGAAAGACGAGGTTT-TGATGATCATTAAGCGACATCCTCAGTGCATTGGATTAGCTGC 1070
|| ||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1015 ACAAAAGACGAG-TTTGTGATGATCATCAAGCGGCATCCTCAGTGCATTGGATTAGCTGC 1073
Query 1071 GGATTCGGTGAAGAAGAAGACCGAGTTTCTTGTGAAGACAATGGGTTGGCCTTTAAAGGT 1130
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1074 GGATTCGGTGAAGAAGAAGTCCGAGTTTCTTGTGAAGACAATGGGTTGGCCTTTGAAGGT 1133
Query 1131 TGTAGCTTCGACTCCTATTGTACTTGGTTTCAGCTTGGAGAAGTTCGTTTTACCGCGGTG 1190
||||||||| || || ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1134 TGTAGCTTCAACCCCCATTGTACTTGGATTCAGCTTGGAGAAGTTTGTTTTACCGCGGTG 1193
Query 1191 TAATGTAATCAAAGCTCTTATGTCGAACGGGCTGATCGGTGAAATGCCTGCGATATCGTC 1250
||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||
Sbjct 1194 TAATGTAATCAAAGCTCTTTTGTCGAACGGGCTGATCGATGAAATCCCTGCGATCTCGTC 1253
Query 1251 TGTTTTGACGAGTCCTAAGCTGAAGTTTTTGAAGCTTTTTGTGGAGAAGCATCAGGATGT 1310
||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 1254 TGTATTGACGAGTCCTAAGCTGAAGTTTTTGAAGCTCTTTGTGGAGAAGCACCAAGATGT 1313
Query 1311 GTTGCCTGAGTTGAACTCTATCTTCACCGGAGATAGCATTCTAATAAAT 1359
||||||||||||||||||||||||||| ||||||| | ||||| |||||
Sbjct 1314 GTTGCCTGAGTTGAACTCTATCTTCACTGGAGATAACGTTCTAGTAAAT 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51427815033
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5