BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23940.1
Length=1858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351411 jgi|Araly1|351411|fgenesh1_pg.C_scaffold_6002004 2132 0.0
> Ahg351411 jgi|Araly1|351411|fgenesh1_pg.C_scaffold_6002004
Length=1425
Score = 2132 bits (1154), Expect = 0.0
Identities = 1314/1393 (94%), Gaps = 4/1393 (0%)
Strand=Plus/Plus
Query 117 ATGAAGATAAAGATTATGAGCAAAACACATGTGAAACCAACAAAACCAGTACTAGGGAAG 176
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGATAAAGATAATGAGCAAAACACATGTGAAACCAACAAAACCAGTACTAGGGAAG 60
Query 177 AAACAATTCCACCTCACCACATTTGATCTTCCTTACCTTGCTTTCTACTACAACCAGAAG 236
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACAATTCCAGCTCACCACATTTGATCTTCCTTACCTTGCTTTCTACTACAACCAGAAG 120
Query 237 TTTCTACTCTACAAGTTCCAGAACCTTCTAGATCTCGAGGAACCCACATTCCAAAACGAG 296
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTCTGCTCTACAAGTTCCAGAACCTTCTAGATCTCGAGGAACCCACATTCCAAAACGAC 180
Query 297 GTCGTGGAGAATCTCAAAGATGGTTTGGGTTTGGTTCTTGAAGACTTCTATCAACTCGCC 356
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GTCGTGGAGAAGCTCAAAGATGGTTTGGGTTTGGTTCTTGAAGACTTCTATCAGCTCGCC 240
Query 357 GGTAAGCTGGCCAAGGACGATGAAGGAGTCTTCCGTGTTGAGTACGACGCTGAAGACTCA 416
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| ||
Sbjct 241 GGTAAGCTGGCCAAGGACGACGAAGGAGTCTTCCGTGTTGAGTACGACGCCGACGACACA 300
Query 417 GAGATCAACGGCGTAGAGTTCTCCGTCGCTCATGCTGCTGACGTAACCGTCGATGATCTA 476
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 301 GAGATCAACGGCGTAGAGTTCTCAGTTGCTCATGCTGCTGACGTTACCGTCGATGATCTA 360
Query 477 ACGGCTGAGGACGGGACGGCTAAGTTCAAGGAGTTGGTTCCTTACAATGGGATCTTGAAC 536
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 ACGGCTGAGGACGGGACGGCTAAGTTCAAGGAGTTGGTTCCTTACAATGCGATCTTGAAC 420
Query 537 TTGGAAGGACTTAGCAGACCACTCCTTGCTGTCCAGGTGACCAAGCTAAAAGATGGGCTT 596
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGGAAGGACTTAACAGACCTCTACTTGCTGTCCAGGTGACCAAGCTAAAAGATGGGCTT 480
Query 597 GCAATGGGCCTAGCTTTCAATCACGCAGTCTTAGACGGGACATCCACGTGGCATTTTATG 656
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 481 GCAATGGGCCTAGCTTTTAATCACGCAGTCTTAGACGGGACTTCCACGTGGCATTTCATG 540
Query 657 AGCTCATGGGCCGAGATCTGTCGTGGAGCCCAATCCATCTCGACTCAACCTTTCCTTGAC 716
|||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||
Sbjct 541 AGCTCATGGGCCGAGATCTGCCGTGGAGCCCAATCTATCTCGACCCAACCATTCCTTGAC 600
Query 717 CGATCGAAGGCGCGTGACACGCGCGTGAAGCTCGACCTCACTGCTCCCAAGGACCCCAAC 776
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 601 CGATCGAAGGCGCGTGACACGCGCGTGAAGCTCGACCTCACTGCTCCTAAGGATCCCAAC 660
Query 777 GAGACCTCCAACGGCGAAGATGCTGCCAATCCGACGGTGGAACCGCCGCAGCTAGTAGAA 836
||||||||||||||||||||||| |||||||| |||| || |||||||||||| || ||
Sbjct 661 GAGACCTCCAACGGCGAAGATGCCGCCAATCCCACGGCGGTACCGCCGCAGCTTGTTGAG 720
Query 837 AAGATCTTCAGGTTCTCGGACTTTGCTGTCCACACGATCAAGTCAAGAGCTAATTCAGTA 896
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 721 AAGATCTTCAGGTTCTCGGACTCTGCTGTCCACACGATCAAGTCAAGAGCCAATTCAGTC 780
Query 897 ATCCCATCGGACAGTTCAAAACCATTCTCAACATTCCAATCCCTGACATCACACATCTGG 956
|||||||||||| |||||||||||||||| || |||||||| || |||||||||||||||
Sbjct 781 ATCCCATCGGACGGTTCAAAACCATTCTCCACTTTCCAATCACTCACATCACACATCTGG 840
Query 957 CGCCACGTCACCTTAGCGCGTGGACTCAAACCGGAGGACATAACTATTTTCACCGTCTTC 1016
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 841 CGCCACGTCACCTTAGCGCGTGGACTCAAACCGGAGGACATAACGATCTTCACCGTCTTC 900
Query 1017 GCCGACTGTCGCCGCCGCGTTGATCCTCCAATGCCGGAGGAATATTTCGGAAACTTGATT 1076
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 GCCGATTGCCGCCGCCGCGTTGATCCTCCAATGCCGGAGGAATATTTCGGAAACTTAATT 960
Query 1077 CAAGCGATCTTCACCGGAACAGCGGCGGGGCTACTAGCAGCGCACGGACCGGAGTTCGGA 1136
|| || |||||||||||||| ||||||||||||||||| || ||||||||||| ||||||
Sbjct 961 CAGGCAATCTTCACCGGAACCGCGGCGGGGCTACTAGCGGCCCACGGACCGGAATTCGGA 1020
Query 1137 GCTTCGGTGATCCAGAAAGCAATCGCGGCACACGACGCGAGTGTGATCGACGCACGTAAC 1196
|||||||||||||| ||||| ||| |||||||||| ||| ||| ||||||||| ||||||
Sbjct 1021 GCTTCGGTGATCCAAAAAGCGATCACGGCACACGATGCGCGTGCGATCGACGCGCGTAAC 1080
Query 1197 GACGAGTGGGAGAAATCGCCGAAGATTTTTCAATTCAAAGACGCCGGAGTGAATTGTGTT 1256
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1081 GACGAGTGGGAGAAATCGCCGAAGATATTTCAATTCAAAGACGCCGGAGTGAATTGTGTT 1140
Query 1257 GCGGTGGGAAGCTCACCGAGGTTTC-GTGTTTACGAGGTGGATTTCGGGTTTGGA-AAAC 1314
|||||||||||||| |||||||||| | |||||||| || |||||||| || || ||||
Sbjct 1141 GCGGTGGGAAGCTCGCCGAGGTTTCAG-GTTTACGAAGTTGATTTCGG-TTGGGGTAAAC 1198
Query 1315 CGGAAACGGTTAGGAGCGGGTCGAATAACCGGTTTAATGGGATGATGTATTTGTACCAAG 1374
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CGGAAATTGTGAGGAGCGGGTCGAATAACCGGTTTAATGGGATGATGTATTTGTACCAAG 1258
Query 1375 GTAAAGCAGGAGGCATAAGTATTGATGTGGAGATAACTCTTGAAGCTTCTGTTATGGAGA 1434
||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1259 GTAAAGCTGGAGGGATAAGTATTGATGTGGAGATTACTCTGGAAGCTTCTGTTATGGAGA 1318
Query 1435 AGCTTGTGAAGAGCAAAGAGTTTTTACTTAGTGAGGAGGAAGAAGAAGATGATGGAAAGA 1494
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1319 AGCTTGAGAAGAGCAAAGAGTTTTTACTTAGTGAGGAGGAAGAAGAAGATGATGGTAAGA 1378
Query 1495 AGCTCACcaatgg 1507
||||||| |||||
Sbjct 1379 AGCTCACTAATGG 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69781328840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5