BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G23950.1

Length=861
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941925 jgi|Araly1|941925|scaffold_602469.1                        608    2e-173


> Ahg941925 jgi|Araly1|941925|scaffold_602469.1
Length=763

 Score =  608 bits (329),  Expect = 2e-173
 Identities = 402/437 (92%), Gaps = 5/437 (1%)
 Strand=Plus/Plus

Query  24   TTTCCAA-TATACCCTCAAGGAAATGTCATCCCACGGCCGAGAAGTAGAGGTGACCATCT  82
            ||||||| |||||||||||| ||||||| || |  ||||||||||| |||||||||||||
Sbjct  1    TTTCCAATTATACCCTCAAGAAAATGTCGTCTCGTGGCCGAGAAGTGGAGGTGACCATCT  60

Query  83   CATCGGCAAAGGATATCAAGAACGTGAACTGGCGCAACGGCCCAAACAAGCCATACGCCG  142
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CATCGGCGAAGGATATCAAGAACGTGAACTGGCGCAACGGCCCAAACAAGCCATACGCCG  120

Query  143  TTGTATGGATCGATCCGA-AGTTCAAATCCTCCACAAGAGTTGACGAAGACGGCAACACT  201
            |||||||| | ||||||| | | ||||||||||||||||||||| ||||||||| |||| 
Sbjct  121  TTGTATGGGTTGATCCGACA-TACAAATCCTCCACAAGAGTTGAAGAAGACGGCGACACG  179

Query  202  TGTACAACGTGGAACGAGACATTTGTCATCGCTTTACCTCCGGCCAACGACGATGACGAC  261
            ||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct  180  TGTCCAACGTGGAACGAGACATTTGTCATCCCTTTGCCTCCGGCCAACGACGATGACGAC  239

Query  262  AAGGTATACATCAACATCGTACACGCAGGCCGTGAAGAGAACACAAAGCCCCTCATCGGC  321
            |||||||||||| ||||||||||||||||  ||||| |||||||||||||||||||||||
Sbjct  240  AAGGTATACATCGACATCGTACACGCAGGAGGTGAAAAGAACACAAAGCCCCTCATCGGC  299

Query  322  TCCGCCCATCTCAGCCTCCGTGATGTCATTGATGACGTCGGCTTCGGCGTCCCCTTCATG  381
            |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct  300  TCCGCCCATCTCAGCCTCCGTGATGTCATTGATGACGTCGGCTTTGGCGTCCCTTTCATG  359

Query  382  AAAACCCTCAAGCTCAAACGCCCCTCTGGCCGACCTCAGGGCAAACTCGA-CGTCACTGT  440
            |||||||||||||||||||| ||||| |||||||| || ||||||||||| | | || ||
Sbjct  360  AAAACCCTCAAGCTCAAACGTCCCTCCGGCCGACCACACGGCAAACTCGAACTT-ACCGT  418

Query  441  CACCGTTCGAGAGACTC  457
             |||||||||||| |||
Sbjct  419  TACCGTTCGAGAGCCTC  435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31870758612


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5