BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23970.1
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489255 jgi|Araly1|489255|fgenesh2_kg.6__2389__AT5G23970.1 1897 0.0
> Ahg489255 jgi|Araly1|489255|fgenesh2_kg.6__2389__AT5G23970.1
Length=1357
Score = 1897 bits (1027), Expect = 0.0
Identities = 1256/1365 (92%), Gaps = 21/1365 (2%)
Strand=Plus/Plus
Query 1 TTTAGAATATTTTGTTGAAAAAGACGAAGTGAGAAAATGAAGCTAGAACTCTTAAGCAAA 60
||| |||| |||||||||||||||||||||| | ||||||||||||| || ||||||||
Sbjct 1 TTTTGAATTTTTTGTTGAAAAAGACGAAGTG-G-CAATGAAGCTAGAATTCGTAAGCAAA 58
Query 61 GAAGTAATCAAACCCGCTTCACCTAATCATCTCCAAACCCTTTCTCTTTCTCTCTTCGAC 120
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 59 GAAATAATCAAACCCGCTTCACCTAATCATCCCCAAACCCTTTCTCTTTCTCTCTTCGAC 118
Query 121 CAGTTTCTTCCTTCAACTTACGTTTCCGCCATTTTCTTTTACGATGATCACTCAAACCAA 180
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 119 CAGTTTCTTCCTTCAACTTACGTTTCCGCCATTTTCTTCTACGATGAACAAGCAAACCAA 178
Query 181 GAAGAC---A---TCCAGAGGCTCAAAAGCTCACTCTCTCAGACTCTGTCTCTTTTTTAT 234
|||||| | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 179 GAAGACATAATCGTCCAGAGGCTCAAGAGCTCACTCTCTCAGACTCTGTCTCTTTTTTAT 238
Query 235 CCACTCGCTGGACAAATCAAAGATGGAGTTACTGTCCATTGCAACGATGAGGGAGCTTTG 294
|||||||||||||||||||||||||| || ||||| ||||||||||| | |||||||||
Sbjct 239 CCACTCGCTGGACAAATCAAAGATGGTGTCACTGTTCATTGCAACGACCAAGGAGCTTTG 298
Query 295 TTTACTGAGGCACGGGCTGAAATATTTCTCTCGGATTTTCTGAGAAACCCATCAGATGCT 354
||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||
Sbjct 299 TTTACAGAGGCACGGGCTGATATATTTCTCTCTGATTTCCTGAGAAATCCATCAGATGCT 358
Query 355 GATTTGATTCAAAAGTTCATTGTCTCTCCGGACCATGCAGATCCAGAAACATGGCCGTTG 414
|||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 GATTTGGTTCACGAGTTCATTGTCTCTCCGGACCATGCAGATCCAGAAACCTGGCCGTTG 418
Query 415 TTGCACGTCAAGGTCATCTTCTTTAAAGACAAAGGATTTGCGGTTGCAGTTAGCGTGTCG 474
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 419 TTGCATGTCAAGGTCATTTTCTTTAAAGACAGAGGATTTGCGGTTGCAGTTAGCGTGTCT 478
Query 475 CACAAGATATGCGATGCGGCCTCGTTGTCAACGTTTGTTTGCAGCTGGACAAAGGCTTCA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 CACAAGATATGCGATGCGGCCTCGTTGTCAACGTTTGTTTGCAGCTGGACAAACGCTTCA 538
Query 535 AAAGGGTATGCGGACACAGTTG-ATCCTGAATTTGTGGGGGCCGATTTCTACCCTCCTGC 593
|||||||| || ||||||| || ||||||||||| |||| |||||||||||||||||||
Sbjct 539 AAAGGGTACGCTGACACAG-TGAATCCTGAATTTCCGGGGCCCGATTTCTACCCTCCTGC 597
Query 594 TGATATTTCTATCGAGTTTCCTCCATTACTGGTACACGAAACAAAATCTAAGACAAAGAG 653
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct 598 TGATATTTCTATCGAGTTTCCTCCATTACTGGTACGCAAAACAAAATCTAAGACAAAAAG 657
Query 654 GTTTGTCTTTGGTTCTTTGATGATTGAAAAGCTTAAAAACAGAGCTTCAAGTGGCAAACG 713
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 658 GTTTGTCTTTGGTTCTTTGATGATTGAAAAGCTAAAAAACAGAGCTTCTAGTGGCAATCT 717
Query 714 TGTA-CCACAAGCT-ACCCGTATTGAGTCCATCACGGCGCTGCTGTTAAGATGCATGACA 771
|| | ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TG-AGCCACAAG-TCACCCGTATTGAGTCCATCACGGCGCTGCTGTTAAGATGCATGACA 775
Query 772 AAAGCAGGGCATTCAAAGTCGGGTAAGGTGAA-AGAATTTGCAATAACACAGACAATGGA 830
|| ||||||||||||||| |||||||||| || | ||||||||||||||||||| ||| |
Sbjct 776 AAGGCAGGGCATTCAAAGGCGGGTAAGGT-AACAAAATTTGCAATAACACAGACCATGAA 834
Query 831 CTTGCGACCTAGAGTTTCTTCCTCTCTCTTGCCGCACAAGGCAATTGGAAACTTCTTCTT 890
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 835 CTTGCGAACTAGAGTTTCTTCCTCTTTCTTGCCGCACAAGGCAATTGGAAACTTCTTCTT 894
Query 891 TTTACCATTACTTAAGGAAAGCTCAGAGAGTAAGATGGAAATCGAAGAAACGGTGTCTAA 950
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 895 TTTACCATTACTTAAGGAAAGCTCAGAGAGTAAGATGGAAATCGAAGAAACTGTTTCTAA 954
Query 951 GCTGCAGAAAACTAAACAGGAGCTGAATGAGCTTATCAGAAACGATTCGGAAGACGCAAA 1010
|||||||||||||||| ||||||| ||| ||||||||||||||||| | || ||||||||
Sbjct 955 GCTGCAGAAAACTAAAGAGGAGCTCAATCAGCTTATCAGAAACGATCCTGACGACGCAAA 1014
Query 1011 GAGTAGCGTTGAAGCCAAAGAGAGAATCGCAAGCGCGATGCTGAGTTCGTTGTGTGAGAT 1070
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 1015 GAGTAGCGTTGAAGCCAAAGAGAGAATCGCAAGCGCGATGCTGAGTTCTTTGCACGAGGT 1074
Query 1071 AAGTCCTGAGATGGAGACATATGCTGTGTCTAGCTGGTGCAGAATGTCGTTTTACGAGGC 1130
||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct 1075 AAGTCCTGAGACCGAGACATATGTTGTGTCTAGTTGGTGCAGGATGTCGTTTTACGAGGC 1134
Query 1131 GAATTTTGGATGGGGGAAGCCGGTTTGGGTTGCCCCAGATTCAGTTGATAAGACGCAGGT 1190
| ||||||||||||| |||||||||||||||||||||| ||| |||| |||||| |||||
Sbjct 1135 GGATTTTGGATGGGGAAAGCCGGTTTGGGTTGCCCCAGGTTCGGTTGGTAAGACCCAGGT 1194
Query 1191 CGTGTTAATGGACT-CAAAGGACAGTGAAGGGGTTGAGGCAAGGGTTACACTACCTGAAA 1249
|||||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1195 CGTGTTAATGGA-TGCAAAGGACAGTGAAGGGATTGAGGCATGGGTTACACTACCTGAAA 1253
Query 1250 CCGACATGGCTAAGTATGAGCATGAT-AGTGAACTACTCGTTTACGCTACTCCAAGTCCT 1308
||||||||| | ||| |||||||||| | ||| || |||| |||||||||| |||||||
Sbjct 1254 CCGACATGGTTGAGTTTGAGCATGATGA-TGAGCTGCTCGCTTACGCTACTATAAGTCCT 1312
Query 1309 AGTATCCTCATCTAGTAATAATTA-TGTTTATCAAACAAGTCTAA 1352
||| ||||||||||||||||| || ||||||||| ||||||||||
Sbjct 1313 AGTGTCCTCATCTAGTAATAACTAATGTTTATCAGACAAGTCTAA 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51313446282
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5