BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23970.1 Length=1371 Score E Sequences producing significant alignments: (Bits) Value Ahg489255 jgi|Araly1|489255|fgenesh2_kg.6__2389__AT5G23970.1 1897 0.0 > Ahg489255 jgi|Araly1|489255|fgenesh2_kg.6__2389__AT5G23970.1 Length=1357 Score = 1897 bits (1027), Expect = 0.0 Identities = 1256/1365 (92%), Gaps = 21/1365 (2%) Strand=Plus/Plus Query 1 TTTAGAATATTTTGTTGAAAAAGACGAAGTGAGAAAATGAAGCTAGAACTCTTAAGCAAA 60 ||| |||| |||||||||||||||||||||| | ||||||||||||| || |||||||| Sbjct 1 TTTTGAATTTTTTGTTGAAAAAGACGAAGTG-G-CAATGAAGCTAGAATTCGTAAGCAAA 58 Query 61 GAAGTAATCAAACCCGCTTCACCTAATCATCTCCAAACCCTTTCTCTTTCTCTCTTCGAC 120 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 59 GAAATAATCAAACCCGCTTCACCTAATCATCCCCAAACCCTTTCTCTTTCTCTCTTCGAC 118 Query 121 CAGTTTCTTCCTTCAACTTACGTTTCCGCCATTTTCTTTTACGATGATCACTCAAACCAA 180 |||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct 119 CAGTTTCTTCCTTCAACTTACGTTTCCGCCATTTTCTTCTACGATGAACAAGCAAACCAA 178 Query 181 GAAGAC---A---TCCAGAGGCTCAAAAGCTCACTCTCTCAGACTCTGTCTCTTTTTTAT 234 |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 179 GAAGACATAATCGTCCAGAGGCTCAAGAGCTCACTCTCTCAGACTCTGTCTCTTTTTTAT 238 Query 235 CCACTCGCTGGACAAATCAAAGATGGAGTTACTGTCCATTGCAACGATGAGGGAGCTTTG 294 |||||||||||||||||||||||||| || ||||| ||||||||||| | ||||||||| Sbjct 239 CCACTCGCTGGACAAATCAAAGATGGTGTCACTGTTCATTGCAACGACCAAGGAGCTTTG 298 Query 295 TTTACTGAGGCACGGGCTGAAATATTTCTCTCGGATTTTCTGAGAAACCCATCAGATGCT 354 ||||| |||||||||||||| ||||||||||| ||||| |||||||| |||||||||||| Sbjct 299 TTTACAGAGGCACGGGCTGATATATTTCTCTCTGATTTCCTGAGAAATCCATCAGATGCT 358 Query 355 GATTTGATTCAAAAGTTCATTGTCTCTCCGGACCATGCAGATCCAGAAACATGGCCGTTG 414 |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 359 GATTTGGTTCACGAGTTCATTGTCTCTCCGGACCATGCAGATCCAGAAACCTGGCCGTTG 418 Query 415 TTGCACGTCAAGGTCATCTTCTTTAAAGACAAAGGATTTGCGGTTGCAGTTAGCGTGTCG 474 ||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 419 TTGCATGTCAAGGTCATTTTCTTTAAAGACAGAGGATTTGCGGTTGCAGTTAGCGTGTCT 478 Query 475 CACAAGATATGCGATGCGGCCTCGTTGTCAACGTTTGTTTGCAGCTGGACAAAGGCTTCA 534 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 479 CACAAGATATGCGATGCGGCCTCGTTGTCAACGTTTGTTTGCAGCTGGACAAACGCTTCA 538 Query 535 AAAGGGTATGCGGACACAGTTG-ATCCTGAATTTGTGGGGGCCGATTTCTACCCTCCTGC 593 |||||||| || ||||||| || ||||||||||| |||| ||||||||||||||||||| Sbjct 539 AAAGGGTACGCTGACACAG-TGAATCCTGAATTTCCGGGGCCCGATTTCTACCCTCCTGC 597 Query 594 TGATATTTCTATCGAGTTTCCTCCATTACTGGTACACGAAACAAAATCTAAGACAAAGAG 653 ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| || Sbjct 598 TGATATTTCTATCGAGTTTCCTCCATTACTGGTACGCAAAACAAAATCTAAGACAAAAAG 657 Query 654 GTTTGTCTTTGGTTCTTTGATGATTGAAAAGCTTAAAAACAGAGCTTCAAGTGGCAAACG 713 ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | Sbjct 658 GTTTGTCTTTGGTTCTTTGATGATTGAAAAGCTAAAAAACAGAGCTTCTAGTGGCAATCT 717 Query 714 TGTA-CCACAAGCT-ACCCGTATTGAGTCCATCACGGCGCTGCTGTTAAGATGCATGACA 771 || | ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TG-AGCCACAAG-TCACCCGTATTGAGTCCATCACGGCGCTGCTGTTAAGATGCATGACA 775 Query 772 AAAGCAGGGCATTCAAAGTCGGGTAAGGTGAA-AGAATTTGCAATAACACAGACAATGGA 830 || ||||||||||||||| |||||||||| || | ||||||||||||||||||| ||| | Sbjct 776 AAGGCAGGGCATTCAAAGGCGGGTAAGGT-AACAAAATTTGCAATAACACAGACCATGAA 834 Query 831 CTTGCGACCTAGAGTTTCTTCCTCTCTCTTGCCGCACAAGGCAATTGGAAACTTCTTCTT 890 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 835 CTTGCGAACTAGAGTTTCTTCCTCTTTCTTGCCGCACAAGGCAATTGGAAACTTCTTCTT 894 Query 891 TTTACCATTACTTAAGGAAAGCTCAGAGAGTAAGATGGAAATCGAAGAAACGGTGTCTAA 950 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 895 TTTACCATTACTTAAGGAAAGCTCAGAGAGTAAGATGGAAATCGAAGAAACTGTTTCTAA 954 Query 951 GCTGCAGAAAACTAAACAGGAGCTGAATGAGCTTATCAGAAACGATTCGGAAGACGCAAA 1010 |||||||||||||||| ||||||| ||| ||||||||||||||||| | || |||||||| Sbjct 955 GCTGCAGAAAACTAAAGAGGAGCTCAATCAGCTTATCAGAAACGATCCTGACGACGCAAA 1014 Query 1011 GAGTAGCGTTGAAGCCAAAGAGAGAATCGCAAGCGCGATGCTGAGTTCGTTGTGTGAGAT 1070 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | Sbjct 1015 GAGTAGCGTTGAAGCCAAAGAGAGAATCGCAAGCGCGATGCTGAGTTCTTTGCACGAGGT 1074 Query 1071 AAGTCCTGAGATGGAGACATATGCTGTGTCTAGCTGGTGCAGAATGTCGTTTTACGAGGC 1130 ||||||||||| |||||||||| ||||||||| |||||||| ||||||||||||||||| Sbjct 1075 AAGTCCTGAGACCGAGACATATGTTGTGTCTAGTTGGTGCAGGATGTCGTTTTACGAGGC 1134 Query 1131 GAATTTTGGATGGGGGAAGCCGGTTTGGGTTGCCCCAGATTCAGTTGATAAGACGCAGGT 1190 | ||||||||||||| |||||||||||||||||||||| ||| |||| |||||| ||||| Sbjct 1135 GGATTTTGGATGGGGAAAGCCGGTTTGGGTTGCCCCAGGTTCGGTTGGTAAGACCCAGGT 1194 Query 1191 CGTGTTAATGGACT-CAAAGGACAGTGAAGGGGTTGAGGCAAGGGTTACACTACCTGAAA 1249 |||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 1195 CGTGTTAATGGA-TGCAAAGGACAGTGAAGGGATTGAGGCATGGGTTACACTACCTGAAA 1253 Query 1250 CCGACATGGCTAAGTATGAGCATGAT-AGTGAACTACTCGTTTACGCTACTCCAAGTCCT 1308 ||||||||| | ||| |||||||||| | ||| || |||| |||||||||| ||||||| Sbjct 1254 CCGACATGGTTGAGTTTGAGCATGATGA-TGAGCTGCTCGCTTACGCTACTATAAGTCCT 1312 Query 1309 AGTATCCTCATCTAGTAATAATTA-TGTTTATCAAACAAGTCTAA 1352 ||| ||||||||||||||||| || ||||||||| |||||||||| Sbjct 1313 AGTGTCCTCATCTAGTAATAACTAATGTTTATCAGACAAGTCTAA 1357 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51313446282 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5