BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23980.1
Length=2256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894281 jgi|Araly1|894281|Al_scaffold_0006_2277 3181 0.0
Ahg894282 jgi|Araly1|894282|Al_scaffold_0006_2278 2920 0.0
> Ahg894281 jgi|Araly1|894281|Al_scaffold_0006_2277
Length=2100
Score = 3181 bits (1722), Expect = 0.0
Identities = 1979/2105 (94%), Gaps = 10/2105 (0%)
Strand=Plus/Plus
Query 42 ATGGGAAATATGAGAAGCTTAGTGAAGACGTTAATGGTGGTTCTATTTCTTGGATGGATT 101
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGAAATATGAGAAGCTTAGTGAAGATGTTAATGGTGGTTCTGTTTCTTGGATGGATT 60
Query 102 TTGGTTTGGATTATGATTTCAACTAATCTTTTTAAAAGCAAATGGACCCCGAAACTCT-C 160
|| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||| | |
Sbjct 61 TTTGTTTGGATTATGATTTCAACTAATCTTTTCAAAAGCAAGTGGACTCCGAAACT-TGC 119
Query 161 CAAGTATCTCAATACTACTTATTTTGGCCCTCAAGGCACGAATCTTGTGCTTCTCACGGT 220
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 CAAAAATCTCAATACTACTTATTTTGGTCCTCAAGGCACGAATCTTGTGCTTCTCACGGT 179
Query 221 TCCCATGATGTTCATTGCGGTTCTAAGTTGTGTTTATTTGCATATCCAGAAGAAACCAAC 280
||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 180 TCCAATGATGTTCATTGCGGTTTTAAGTTGTGTTTATTTGCATGTCCAGAAGAAACCAAC 239
Query 281 CCAACCTCAAAGAGAATGGAAGCTAAAAAGGATAATGGGGAGGGTGATTATGGTGATGAA 340
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 240 CCAACCTCAAAGAGAATGGAAGCTAAAAAGGAGAATGGGGAAGGTGATTATGGTGATGAA 299
Query 341 CCCATTGGGGATAGTGACAGCCACGGAGTTAACTTTTTCTCTATTGTTTGTTGCTCTTTT 400
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 300 TCCATTGGGGATAGTGACAGCAACAGAGTTAACTTTTTCTCTATTGTTTGTTGCTCTTTT 359
Query 401 GGCTTGGTCCCTCTACAATTATCTCTACCTTAGCTATCACGTCCACCTTCATAACGACGA 460
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 360 GGCTTGGTCCCTCTACAATTATCTCTACATTAGCTATCACATCCACCTTCATAACGACGA 419
Query 461 CAACGCAAAAATATGGCAGGCAAAGTTTAGGGCTTTCGGCCTGAGAATAGGATATGTGGG 520
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAACGCAAAAATATGGCAGGCGAAGTTTAGGGCTTTCGGCCTGAGAATAGGATATGTGGG 479
Query 521 CAACATCTGTTGGGCCTTTTTGTTCTTCCCGGTGACAAGAGCCTCTACGATTCTGCCACT 580
| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 CCACATCTGCTGGGCTTTTTTGTTCTTCCCGGTGACAAGAGCCTCTACGATTCTGCCAAT 539
Query 581 TGTCGGGTTAACGTCAGAGTCAAGTATAAAATATCACATTTGGCTTGGACATGTCTCAAA 640
| ||||||||||||| |||||||| || |||||||||||||||||||||||| |||||||
Sbjct 540 TTTCGGGTTAACGTCGGAGTCAAGCATCAAATATCACATTTGGCTTGGACATATCTCAAA 599
Query 641 -TTT-TTGCTTCCTCGTTCACACAGTCGTTTTCCTTATCTACTGGGCCATGATCAATAAG 698
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 CTTTCTT--TTCCTCGTTCACACAGTTGTTTTCCTTATCTACTGGGCCATGATCAATAAG 657
Query 699 TTGATGGAGACGTTTGCATGGAATCCAACATATGTGCCTAATCTGGCCGGAACAATAGCG 758
||||||||||| |||||||||||| | ||||||||||| ||||| |||||||||||||||
Sbjct 658 TTGATGGAGACCTTTGCATGGAATGCGACATATGTGCCAAATCTAGCCGGAACAATAGCG 717
Query 759 ATGGTGATTGGAATAGCGATGTGGGTGACGAGTTTACCATCCTTTAGACGAAAGAAGTTT 818
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 ATGGTGATTGGAATAGCGATGTGGGTAACGAGTTTACCATCCTTTAGACGAAAGAAGTTT 777
Query 819 GAGATTTTCTTCTACACTCACCATCTCTACGGTCTCTATATAGTCTTCTACGTAATCCAC 878
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 778 GAGATTTTCTTCTACACTCACCATCTCTACGGTGTCTACATAGTCTTCTACGTAATCCAT 837
Query 879 GTGGGAGACTCGTGGTTCTGCATGATCTTGCCAAACATCTTTCTCTTTTTTATAGACCGA 938
|| || |||||||||||||||||||||||||| ||| ||||||||||||| || |||||
Sbjct 838 GTCGGTGACTCGTGGTTCTGCATGATCTTGCCCAACGTCTTTCTCTTTTTCATCGACCGG 897
Query 939 TACTTGAGA-TTCTTACAATCCACCAAGAGATCCAGACTTGTGTCTGCTAGGATCTTACC 997
| ||||||| ||| ||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 898 TTCTTGAGATTTC-TACAATCGACCAAGAGATCCAGACTTGTTTCTGCTAGGATCTTACC 956
Query 998 TTCAGACAACCTCGAACTCACTTTCTCCAAAACCCCAGGGCTACATTATACCCCAACAAG 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TTCAGACAACCTCGAACTCACTTTCTCCAAAACCCCAGGGCTACATTATACCCCAACAAG 1016
Query 1058 CATATTGTTTCTACATGTGCCAAGCATTTCGAAGATTCAATGGCATCCATTTACTATAAC 1117
|||||||||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||
Sbjct 1017 CATATTGTTTCTACATATGCCAAGCATTTCCAAGCTGCAATGGCATCCATTTACTGTAAC 1076
Query 1118 TTCGAGCAGCAACTTAGAGAAAGATACATTAAGTGTTGTAATCAGAAGACAGGGAAGTTG 1177
||||||||| | |||||||||||||||| |||| |||||||| |||| ||| ||||||||
Sbjct 1077 TTCGAGCAGTACCTTAGAGAAAGATACACTAAGCGTTGTAATTAGAAAACAAGGAAGTTG 1136
Query 1178 GACTCAAAAGCTTTACACACATCTCTCTTCTTCCATTGATTCTCTCGAAGTTTCTACTGA 1237
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1137 GACTCAAAAGCTTTACACCCAAATCTCTTCTTCCATTGATTCTCTCGAAGTTTCTACTGA 1196
Query 1238 GGGTCCGTATGGCCCTAACTCTTTTGATGTCTCAAGGCATAACTCTCTAATACTAGTGAG 1297
||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1197 AGGTCCTTATGGCCCTAATTCTTTTGATGTCTCGAGGCATAACTCTCTAATACTAGTGAG 1256
Query 1298 CGGTGGAAGCGGAATTACACCCTTCATTTCGGTTATCAGAGAACTCATATCTCAGAGCCA 1357
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1257 CGGTGGAAGCGGAATTACACCCTTCATTTCGGTTATCAGAGAACTCATATTTCAGATTCA 1316
Query 1358 AAACAAGAGCACAAAGCTACCAGATGTTCTTCTTGTTTGTTCTTTTAAACATTACCATGA 1417
|||| ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 1317 AAACCAGAGCACAAAGCTACCAGATGTTCTTCTTGTTTGTTCCTTCAAAGATTACCATGA 1376
Query 1418 TCTTGCGTTTTTAGACCTAATCTTCCCACTGGATATGTCAGCCTCTGACATTTCTAGGCT 1477
|||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||
Sbjct 1377 TCTTGCGTTTTTAGACCTAATCTTCCCATTGGATATATCAGTCTCTGACATTTCTAGGCT 1436
Query 1478 GAATCTCCGAATTGAGGCCTATATTACAAGAGAAGACAAGAAGCCCGAGACAACTGATGA 1537
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1437 GAATCTTCGAATTGAGGCCTATGTTACAAGAGAAGACAAGAAGCCCGAGACAACTGATGA 1496
Query 1538 CCACAGACTTCTTCAAACAAAATGGTTTAAACCGCAGCCTCTAGACTCTCCTATCTCACC 1597
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1497 TCACAGACTTCTTCAAACAAAATGGTTCAAACCGCAGCCTCTAGACTCTCCTATATCACC 1556
Query 1598 TGTTCTTGGACCAAACAACTTCCTCTGGCTCGGAGTTGTGATCTTATCATCATTCGTCAT 1657
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TGTTCTTGGACCCAACAACTTTCTCTGGCTCGGAGTTGTGATCTTATCATCATTCGTCAT 1616
Query 1658 GTTTCTCTTGCTCATAGGGATCGTCACACGTTACTATATATACCCTGTTGACCATAATAC 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1617 GTTTCTCTTGCTCATAGGGATCGTCACACGTTACTATATATACCCTGTTGACCATAACAC 1676
Query 1718 AGGATCCATCTACAATTTCTCATATAGAGGGCTTTGGGACATGTTTCTAGGAAGTGCGTG 1777
|||||| |||||||||||||| ||||||||||||||||||||||| |||||| ||| |||
Sbjct 1677 AGGATCGATCTACAATTTCTCGTATAGAGGGCTTTGGGACATGTTCCTAGGATGTGTGTG 1736
Query 1778 CATTTTCATCTCTTCCAGTGTAGTTTTCTTATGGCGCAAGAAACAGAACAAAGAAGGGGA 1837
||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1737 CATTTTCATCTCTTCAAGCATAGTTTTCTTATGGCGCAAGAAACAGAACAAAGAAGGAGA 1796
Query 1838 TAAGGAGTTCAAGAATCAGGTACAAAGCGTAGAGTTTCAGACACCCACTTCTTCTCCAGG 1897
|||||| |||||| |||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1797 TAAGGAAACCAAGAAGCAGGTACAAAGCGTAGAGTTTCAGACGCCCACGTCCTCTCCAGG 1856
Query 1898 TTCATGGTTCCACGGCCACGAGAGAGAGCTCGAGAGTGTTCCCTATCAATCTATAGTACA 1957
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1857 TTCATGGTTCCACGGCCACGAGAGAGAGCTCGAGAGCGTTCCCTATCAATCTATAGTAAA 1916
Query 1958 AGCCACTTCAGTCCACTTCGGCTCCAAACCTAATCTGAAAAAGATTCTACTTG-AGGCTG 2016
||||||||||||||| |||||||||||||||||||||||||||||||| ||| | || |
Sbjct 1917 AGCCACTTCAGTCCATTTCGGCTCCAAACCTAATCTGAAAAAGATTCTG-TTGGACGCAG 1975
Query 2017 AGGGTTCAGAAGACGTTGGGGTGATGGTTTGCGGACCAAGAAAGATGAGACATGAAGTTG 2076
| || || ||||| ||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1976 AAGGCTCGGAAGATGTTGGGGTGATGGTTTGCGGACCAAAAAAGATGAGACATGAGGTTG 2035
Query 2077 CAAAGATATGTTCATCTGGTTTGGCTAAGAACCTTCACTTTGAGGCAATTAGTTTCAACT 2136
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2036 CAAAGATATGTTCATCTGGTTTGGCTAAGAATCTTCACTTTGAGGCCATTAGTTTCAACT 2095
Query 2137 GGTGA 2141
|||||
Sbjct 2096 GGTGA 2100
> Ahg894282 jgi|Araly1|894282|Al_scaffold_0006_2278
Length=2100
Score = 2920 bits (1581), Expect = 0.0
Identities = 1934/2107 (92%), Gaps = 14/2107 (1%)
Strand=Plus/Plus
Query 42 ATGGGAAATATGAGAAGCTTAGTGAAGACGTTAATGGTGGTTCTATTTCTTGGATGGATT 101
|||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1 ATGGGAGATATGAGAAGCTTAGTGAAGATGTTAATGGTGGTTCTATTTCTAGGATGGATT 60
Query 102 TTGGTTTGGATTATGATTTCAACTAATCTTTTTAAAAGCAAATGGACCCCGAAACTCTCC 161
|| |||||||||||||||||||| |||||| ||||| |||||||| || |||||| ||
Sbjct 61 TTTATTTGGATTATGATTTCAACTGATCTTTACAAAAGTAAATGGACTCCAAAACTCGCC 120
Query 162 AAGTATCTCAATACTACTTATTTTGGCCCTCAAGGCACGAATCTTGTGCTTCTCACGGTT 221
||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||
Sbjct 121 AAGAATCTCAATACTACTTATTTTGGCCCTCAAGGCATGAATCTTGTGCTACTCACAGTT 180
Query 222 CCCATGATGTTCATTGCGGTTCTAAGTTGTGTTTATTTGCATATCCAGAAGAAACCAACC 281
|| |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 181 CCAATGATGTTTATTGCGGTTCTGAGTTGTGTTTATTTGCATACCCAGAAGAAACCAACC 240
Query 282 CAACCTCAAAGAGAATGGAAGCTAAAAAGGATAATGGGGAGGGTGATTATGGTGATGAAC 341
|||||||||||||||||||| ||||| ||| |||||| ||||| || ||||||||||||
Sbjct 241 CAACCTCAAAGAGAATGGAAATTAAAAGGGAGAATGGGAAGGGTAATAATGGTGATGAAC 300
Query 342 CCATTGGGGATAGTGACAGCCACGGAGTT-AACTTTTTCTCTATTGTTTGTTGCTCTTTT 400
|||||||||||||| || ||||| ||||| | | |||||||| ||||| || ||||||||
Sbjct 301 CCATTGGGGATAGTAACGGCCACAGAGTTGATC-TTTTCTCTGTTGTTCGTGGCTCTTTT 359
Query 401 GGCTTGGTCCCTCTAC-AATTATCTCTACCTTAGCTATCACGTCCACCTTCATAACGACG 459
| |||| | |||| | | | |||| |||||||||||||||||||||||||||||| |||
Sbjct 360 GATTTGGGCTCTCT-CTAGTCATCTATACCTTAGCTATCACGTCCACCTTCATAACCACG 418
Query 460 ACAACGCAAAAATATGGCAGGCAAAGTTTAGGGCTTTCGGCCTGAGAATAGGATATGTGG 519
||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 419 ACAACGCCAAAATATGGCAGGCAAAGTTTAGGGCTTTTGGACTGAGAATAGGATACGTGG 478
Query 520 GCA-AC-ATCTGTTGGGCCTTTTTGTTCTTCCCGGTGACAAGAGCCTCTACGATTCTGCC 577
| | || || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 G-ACACTAT-TGCTGGGCCTTTTTGTTCTTCCCGGTGACAAGAGCCTCTACGATTCTGCC 536
Query 578 ACTTGTCGGGTTAACGTCAGAGTCAAGTATAAAATATCACATTTGGCTTGGACATGTCTC 637
|||||| ||||| || || |||||||| || |||||||| |||||||| |||||||||||
Sbjct 537 ACTTGTTGGGTTGACTTCGGAGTCAAGCATCAAATATCATATTTGGCTCGGACATGTCTC 596
Query 638 AAA-TTTTTGCTTCCTCGTTCACACAGTCGTTTTCCTTATCTACTGGGCCATGATCAATA 696
||| ||| | |||||| |||||||| || ||||||||||||||||||||||||| ||||
Sbjct 597 AAACTTTCT-CTTCCTTGTTCACACCGTGGTTTTCCTTATCTACTGGGCCATGACCAATC 655
Query 697 AGTTGATGGAGACGTTTGCATGGAATCCAACATATGTGCCTAATCTGGCCGGAACAATAG 756
|||||||||||||||||||||||||||| ||||||||| |||| || |||||||||||||
Sbjct 656 AGTTGATGGAGACGTTTGCATGGAATCCGACATATGTGTCTAACCTAGCCGGAACAATAG 715
Query 757 CGATGGTGATTGGAATAGCGATGTGGGTGACGAGTTTACCATCCTTTAGACGAAAGAAGT 816
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 716 CGATGGTGATTGGAATTGCGATGTGGGTGACGAGTTTACCATCCTATAGACGAAAGAAGT 775
Query 817 TTGAGATTTTCTTCTACACTCACCATCTCTACGGTCTCTATATAGTCTTCTACGTAATCC 876
| ||| ||||||||||||||||||| |||||||||||||| ||| ||||||||||||| |
Sbjct 776 TCGAGCTTTTCTTCTACACTCACCAACTCTACGGTCTCTACATAATCTTCTACGTAATGC 835
Query 877 ACGTGGGAGACTCGTGGTTCTGCATGATCTTGCCAAACATCTTTCTCTTTTTTATAGACC 936
| ||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||
Sbjct 836 ATGTGGGAGACTCGTGGTTCTGCATGATCTTGCCAAACATCTTCCTCTTCTTCATCGACC 895
Query 937 GATACTTGAGATTCTTACAATCCACCAAGAGATCCAGACTTGTGTCTGCTAGGATCTTAC 996
| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 896 GCTACTTGAGATTCTTACAATCCACCAAGAGATCCAGACTTGTTTCTGCTAAGATCTTAC 955
Query 997 CTTCAGACAACCTCGAACTCACTTTCTCCAAAACCCCAGGGC-TACATTATACCCCAACA 1055
|||||||||||||||||||||||||| ||||||| || ||| |||||||||||||||||
Sbjct 956 CTTCAGACAACCTCGAACTCACTTTCGCCAAAACTTCA-GGCGTACATTATACCCCAACA 1014
Query 1056 AGCATATTGTTTCTACATGTGCCAAGCATTTCGAAGATTCAATGGCATCCATTTACTATA 1115
||||||||||||||||||||||| |||||||| ||| |||||||||||||||| || |||
Sbjct 1015 AGCATATTGTTTCTACATGTGCCGAGCATTTCCAAGCTTCAATGGCATCCATTCACAATA 1074
Query 1116 ACTTCGAGCAGCAACTTAGAGAAAGATACATTAAGTGTTGTAATCAGAAGACAGGGAAGT 1175
||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 1075 ACTTCGAGCAGCAACTTAGAGAAAGATACGCTAAGTGTTGTGATCAGGAGACAGGGAAGT 1134
Query 1176 TGGACTCAAAAGCTTTACACACATCTCTCTTCTTCCATTGATTCTCTCGAAGTTTCTACT 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TGGACTCAAAAGCTTTACACACATCTCTCTTCTTCCATTGATTCTCTCGAAGTTTCTACT 1194
Query 1236 GAGGGTCCGTATGGCCCTAACTCTTTTGATGTCTCAAGGCATAACTCTCTAATACTAGTG 1295
|| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1195 GAAGGTCCTTATGGCCCTAACTCTTTTGATGTCTCGAGGCATGGCTCTCTAATACTAGTG 1254
Query 1296 AGCGGTGGAAGCGGAATTACACCCTTCATTTCGGTTATCAGAGAACTCATATCTCAGAGC 1355
||||||| |||||| ||||||||||||||||||| ||||| |||||||||| |||||||
Sbjct 1255 GGCGGTGGTAGCGGAGTTACACCCTTCATTTCGGTGATCAGGGAACTCATATTTCAGAGC 1314
Query 1356 CAAAACAAGAGCACAAAGCTACCAGATGTTCTTCTTGTTTGTTCTTTTAAACATTACCAT 1415
|||||| |||| |||| |||||| ||||||| ||||||||| | |||||||||||||||
Sbjct 1315 CAAAACCCGAGCGCAAAACTACCAAATGTTCTCCTTGTTTGTGCCTTTAAACATTACCAT 1374
Query 1416 GATCTTGCGTTTTTAGACCTAATCTTCCCA-CTGGATATGTCAGCCTCTGACATTTCTAG 1474
|||||||||||||||||| ||||||||||| | | |||| |||| ||| ||||||||||
Sbjct 1375 GATCTTGCGTTTTTAGACTTAATCTTCCCATCAG-ATATATCAGTCTCGGACATTTCTAA 1433
Query 1475 GCTGAATCTCCGAATTGAGGCCTATATTACAAGAGAAGACAAGAAGCCCGAGACAACTGA 1534
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GCTAAATCTCCGAATTGAGGCCTATATTACAAGAGAAGACAAGAAGCCCGAGACAACTGA 1493
Query 1535 TGACCACAGACTTCTTCAAACAAAATGGTTTAAACCGCAGCCTCTAGACTCTCCTATCTC 1594
||| |||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 1494 TGATCACAGACTTCTTCAGACAAAATGGTTCAAACCACAGCCTCTAGACTCCCCTATCTC 1553
Query 1595 ACCTGTTCTTGGACCAAACAACTTCCTCTGGCTCGGAGTTGTGATCTTATCATCATTCGT 1654
||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 1554 ACCTGTTCTTGGACCCAACAACTTCCTCTGGCTCGGAGTCGTGATTTTATCATCATTCTT 1613
Query 1655 CATGTTTCTCTTGCTCATAGGGATCGTCACACGTTACTATATATACCCTGTTGACCATAA 1714
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||
Sbjct 1614 CATGTTTCTCTTGCTCATAGGGATTGTCACACGTTACTATGTATACCCTGTTGATCATAA 1673
Query 1715 TACAGGATCCATCTACAATTTCTCATATAGAGGGCTTTGGGACATGTTTCTAGGAAGTGC 1774
|||||| |||||||||||||| ||||||| ||||||||| ||||| |||||| ||
Sbjct 1674 CACAGGAAAGATCTACAATTTCTCGTATAGAGCGCTTTGGGATATGTTCCTAGGATCTGT 1733
Query 1775 GTGCATTTTCATCTCTTCCAGTGTAGTTTTCTTATGGCGCAAGAAACAGAACAAAGAAGG 1834
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1734 GTGCATTTTCATCTCTTCAAGCATAGTTTTCTTATGGCGCAAGAAACAGAACAAAGAAGG 1793
Query 1835 GGATAAGGAGTTCAAGAATCAGGTACAAAGCGTAGAGTTTCAGACACCCACTTCTTCTCC 1894
|||||||||| |||||| |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1794 AGATAAGGAGTCCAAGAAGCAGGTACAGAGCGTAGAGTTTCAGACTCCCACGTCTTCTCC 1853
Query 1895 AGGTTCATGGTTCCACGGCCACGAGAGAGAGCTCGAGAGTGTTCCCTATCAATCTATAGT 1954
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1854 AGGTTCATGGTTCCACGGCCACGAGAGAGAGCTCGAGAGCGTTCCCTATCAATCCATAGT 1913
Query 1955 ACAAGCCACTTCAGTCCACTTCGGCTCCAAACCTAATCTGAAAAAGATTCTACTTGAGGC 2014
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1914 ACAAGCCACTTCAGTCCACTTCGGCTCCAAACCTAATTTGAAAAAGATTCTATTTGAGGC 1973
Query 2015 TGAGGGTTCAGAAGACGTTGGGGTGATGGTTTGCGGACCAAGAAAGATGAGACATGAAGT 2074
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1974 AGAAGGTTCCGAAGACGTTGGGGTGATGGTTTGCGGACCAAGAAAGATGAGACATGAGGT 2033
Query 2075 TGCAAAGATATGTTCATCTGGTTTGGCTAAGAACCTTCACTTTGAGGCAATTAGTTTCAA 2134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 TGCAAAGATATGTTCATCTGGTTTGGCTAAGAACCTTCACTTTGAGGCAATTAGTTTCAA 2093
Query 2135 CTGGTGA 2141
|||||||
Sbjct 2094 CTGGTGA 2100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84941246350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5