BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24000.1
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489258 jgi|Araly1|489258|fgenesh2_kg.6__2392__AT5G24000.1 2189 0.0
> Ahg489258 jgi|Araly1|489258|fgenesh2_kg.6__2392__AT5G24000.1
Length=1403
Score = 2189 bits (1185), Expect = 0.0
Identities = 1335/1408 (95%), Gaps = 7/1408 (0%)
Strand=Plus/Plus
Query 10 AAAAGTGCAATGGCTCTTCTATTCACAGTGGTATCACCAAATCCACTGTCCCCCACAATC 69
||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1 AAAAGTGGTATGGCTCTTCTATTCACAGTGGTTTCACCAAATCCACTGTCACCCACAATC 60
Query 70 TCATCGCTCCACGTGTCTCCTTCCCGCCACCACTTATCATCATCAATAACCATACGCCGT 129
||||||||||||||||||||||||||||||||| | | ||||||||||| ||| ||||||
Sbjct 61 TCATCGCTCCACGTGTCTCCTTCCCGCCACCAC-T-T-ATCATCAATAATCATCCGCCGT 117
Query 130 AACAAATCGCCGCCGGTAACAC-TCACTCCACATCGTCTTGTTTCATCTCGACGCCGGCG 188
|||||||||||||||| ||||| || |||||| ||||||||||||||||||||||||||
Sbjct 118 AACAAATCGCCGCCGGGAACACTTC-CTCCACCGCGTCTTGTTTCATCTCGACGCCGGCG 176
Query 189 CGTGAAGGTCTACTCACAACTACGATTCCCTCTAATCTCCCCAGACGATCACTGGTCACA 248
||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 177 CGTGAAGGTCTTCTCACAACAACGATTCCCTCTAATCTCCCCCGACGATCACTGGTCTCA 236
Query 249 ATGGGCTGCTCTCTTCGCCGCCGGAGCTTTCGGTGTCTGGTCGGAGAAGACGAAAATTGG 308
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATGGGCCGCTCTCTTCGCCTCCGGAGCTTTCGGTGTCTGGTCGGAGAAGACGAAAATTGG 296
Query 309 AAGTATGGTGAGTGGTGCGTTGACAAGTACGTTACTTGGGCTCGCCGCTAGCAATTTAAG 368
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 297 AAGCATGGTGAGTGGTGCGTTGACAAGTACGTTACTTGGGCTCGCCGCGAGCAATTTAGG 356
Query 369 GTTAATTCCGTTTGAAACGCCGTCGTATGGCTTCTTCATGGAGTTTCTCTTGCCGCATAC 428
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 357 GTTAATTCCGTTTGAAACGCCGTCGTATGACTTCTTCATGGAGTTTCTCTTGCCGCATAC 416
Query 429 GATTCCATTGTTGTTGTTTAGAGCTGATCTCCGTCGTATTATCCGATCTACTGGATCATT 488
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 417 GATTCCATTGTTGTTGTTTAGAGCTGATCTTCGTCGTATTATCCGATCTACTGGGTCATT 476
Query 489 GCTTCTTGCATTCTTAATTGGATCTGTTGCGACGATTGTTGGAACAGTGGTGGCTTTTAT 548
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 477 GCTTCTTGCATTCTTAATTGGATCTGTTGCGACGATTGTTGGGACTGTGGTGGCTTTTAT 536
Query 549 GTTGGTACCGATGAGATCGCTTGGTCCGGATAACTGGAAAATAGCAGCTGCTCTTATGGG 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTTGGTACCGATGAGATCGCTTGGTCCGGATAACTGGAAAATAGCAGCTGCTCTTATGGG 596
Query 609 GAGTTACATTGGTGGATCCCTTAATTTTGTTGCGATATCGGAGGCTCTACAGATATCTCC 668
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 597 GAGTTACATTGGTGGATCCCTTAATTTTGTTGCGATATCGGAGGCTCTACAGATTTCTCC 656
Query 669 ATCTGTTATAGCAGCGGGTGTAGCTGTGGATAATGTCATATGTGCTCTTCACTTCATGGT 728
||||||| ||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 657 ATCTGTTGTAGCAGCGGGTGTAGCTGTAGACAATGTCATATGTGCTCTTTACTTCATGGT 716
Query 729 TTTGTTTGCGTTGGCCTCAAAGATACCCCCTGAGACCGCCTCAGCATCTTCCCCTGATGC 788
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 717 TTTGTTTGCGTTGGCCTCAAAGATACCGCCTGAGACCACCTCAGCATCTTCCCCTGATGC 776
Query 789 TGACATGACTAAGGATGACAAGCTCGAGGACAAGAACAGAGTGGTTTCAACTTCAATTGC 848
|||||||||||| |||||| ||||| ||||||||||||||||||||||||| || |||||
Sbjct 777 TGACATGACTAAAGATGACGAGCTCAAGGACAAGAACAGAGTGGTTTCAACGTCGATTGC 836
Query 849 ACTATC-AGTTTCCTTCCTGATATGCAAAGCTGCAATTACGTTGACGACGCTATTTAAGA 907
||||| | ||||||||||||||||||||||||| || || |||||||||||||||| |
Sbjct 837 GCTATCGA-TTTCCTTCCTGATATGCAAAGCTGCTGTTTCGATGACGACGCTATTTAATA 895
Query 908 TACAAGGAGTTATGCTTCCTGCAGTAACAGCCATCACCATTGTCTTGGCAACATCCTTCC 967
| ||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 896 TCCAAGGAGGCATGCTTCCTGCAGTAACAGCCATCACCATCGTCTTGGCAACTTCATTCC 955
Query 968 CTGATTTCTTCAACTCTCTGGCACCTTCTGCTGAAACCATCTCTCTCATTCTCATGCAGG 1027
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CTGATTTCTTCAATTCTCTGGCACCTTCTGCTGAAACCATCTCTCTCATTCTCATGCAGG 1015
Query 1028 TATTTTTCACAATTCTAGGAGCCACAGGGAGTGTATGGAATGTAATCAACACTGCCCCAA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TATTTTTCACAATTCTAGGAGCCACAGGGAGTGTATGGAATGTAATCAACACTGCCCCAA 1075
Query 1088 GTATCTTCTTATTTGCTGCTATTCAAGTAATGGTTCATCTAGCAGTGACTTTGGTTCTAG 1147
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GTATCTTCCTATTTGCTGCAATTCAAGTAATGGTTCATCTAGCAGTGACTTTGGTTCTAG 1135
Query 1148 GAAAACTATTCTGTATCGACATGAAGCTATTACTTCTTGCATCAAATGCTAACATCGGAG 1207
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1136 GAAAGCTATTCTGTATCGACATGAAGCTATTACTTCTTGCATCAAACGCTAACATCGGAG 1195
Query 1208 GCCCAACCACTGCGTGTGCCATGGCAACCGCAAAAGGATGGACTTCTCTTGTCGTCCCCG 1267
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1196 GCCCAACAACTGCGTGTGCCATGGCAACCGCAAAAGGATGGACTTCTCTAGTCGTCCCCG 1255
Query 1268 GGATTCTCTCTGGTGTTTTTGGGGTCTCCATAGCAACTTTTCTAGGCATTGGATGTGGAG 1327
|||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1256 GGATTCTCTCGGGCGTTTTTGGGGTCTCTATAGCAACTTTTCTCGGCATTGGATGTGGAG 1315
Query 1328 TTTTTGTCCTCAAACGATTATAGATTTCTAAACAGTTCTAATGATTGGAGGATTCTGAAG 1387
|||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 1316 TTTTTGTCCTTAAACGATTATAGATTTCTAAACAGTTGTAATGATTAGAAGATTCTGAAG 1375
Query 1388 CTAGACTTCTTGTAAATTGCTAATTGTT 1415
| | ||| ||||||||||| ||||||||
Sbjct 1376 CCACACTCCTTGTAAATTGTTAATTGTT 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52983530795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5