BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24010.1
Length=2821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489259 jgi|Araly1|489259|fgenesh2_kg.6__2393__AT5G24010.1 4324 0.0
> Ahg489259 jgi|Araly1|489259|fgenesh2_kg.6__2393__AT5G24010.1
Length=2740
Score = 4324 bits (2341), Expect = 0.0
Identities = 2595/2719 (95%), Gaps = 12/2719 (0%)
Strand=Plus/Plus
Query 3 AATACAGAGAAGTGACAGCAAAAACCCACTTTCTAGTTTCTCCATCTCTTCTTCTCTTTA 62
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AATACAGAGAAGTGACAGCAAAAACGCACTTTCTAGTTTCTCCATCTCTTCTTCTCTTTA 60
Query 63 ATATCATCAAACCAAAACCTTTCTCAAACCTTCCCCAAAAAAGCTTCACTCTAATGGCGT 122
|||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 ATATCATCAACCCAAAAACTTTCTCAAACCTTCCCC-AAAAAGCTTCACTCTAATGGCGT 119
Query 123 TT-CCAATAAATCTAACCCAAACCcttctcttcttcttctgccctcttcttcatctctct 181
|| |||| |||||||| ||||||||||||||||||||||| ||||||||||||| |||
Sbjct 120 TTCCCAA-AAATCTAATCCAAACCCTTCTCTTCTTCTTCT---CTCTTCTTCATCTTTCT 175
Query 182 ttcGCTGCTTTCACTCCAACTGATAATTATCTCATCAATTCCGGTTCTAACACCAATACA 241
|||||||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 176 CTCGCTGCTTTCACTCCAACTGATAATTACCTTGTCAATTCCGGTTCTAACACCAACACA 235
Query 242 TCTTTCTTCACAACCCGTTCTTTTCTCAGCGACTCTTCAGAACCTGGCTCGAGTTTTCTC 301
||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 236 TCTTTCTTCACAATCCGTTCTTTTCTCAGCGACTCTTCAAAACCTGGCTTGAGTTTTCTC 295
Query 302 TCCACCGATCGATCCATCTCGATTTCTGACACGAACCCATCTCCAGATTCACCCGTTTTG 361
||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||
Sbjct 296 TCCACCGATCGATCCATTTCGATTTCTGACCCGAACCCATCTCCAGATTCACCCGCTTTA 355
Query 362 TACAACACAGCTCGTGTTTTCCCCGTCGGAGGATCATACAAATTCCAAGTCACTACCAAA 421
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 356 TACAACACAGCTCGTGTTTTCCCCATCGGAGGATCATACAAATTCCAAGTCACTACCAAA 415
Query 422 GGCACTCACTTTATCCGTCTCCATTTCGCGCCTTTTAAAGCTTCGAGATTTAACTTAAGG 481
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 416 GGCACTCACTTTATCCGTCTCCATTTCGCGCCTTTTAAAGCTTCAAGCTTTAACTTAAGG 475
Query 482 TCTGCTAAATTTCGAGTTTTGATTAATGGGTTCTCTGTGATTAACAGTTTCAGTACTAGC 541
||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 476 TCTGCGAAATTTCGAGTTTTGATTAATGGGTTCTCTGTGATGAATAGTTTCAGTACTAGC 535
Query 542 TCCGTCGTTGTTAAAGAATTCATACTCAAAATCGATGACCCTGTTTTAGAGATTTCGTTT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCCGTCGTTGTTAAAGAATTCATACTCAAAATCGATGACCCTGTTTTAGAGATTTCGTTT 595
Query 602 TTGCCCTTTAAAGCTTCTGGATTTGGGTTTGTTAATGCGGTTGAAGTGTTTTCAGCACCT 661
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTGCCCTCTAAAGCTTCTGGGTTTGGGTTTGTTAATGCGGTTGAAGTGTTTTCAGCACCT 655
Query 662 AAGGATTATATAATGGATCAAGGAACGAAGCTTGTGATTCCTAACTCTGCTCAAATCTTT 721
|| |||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 656 AATAATTATATAATGGATCAAGGAACTAAGCTTGTAATCCCTAACTCTGCTCAAATCTTT 715
Query 722 AGTAACTTGTCATCTCAAGTTCTTGAGACTGTTCATAGAATCAACGTTGGTGGTTCGAAA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AGTAACTTGTCATCTCAAGTTCTTGAGACTGTTCATAGAATCAACGTTGGTGGTTCGAAA 775
Query 782 TTGACGCCGTTTAATGATACGTTGTGGAGGACTTGGGTTGTTGATGACAACTATCTTC-T 840
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 776 TTGACGCCGTTTAATGATACATTGTGGAGGACTTGGGTTGTTGATGACAACTATC-TCTT 834
Query 841 CTTGAGAGCTGCTGCTAGACGTGCTTGGACTACTCATTCTCCGAATTATCAAAACGGTGG 900
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GTTGAGAGCTGCTGCGAGACGTGCTTGGACTACTCATTCTCCGAATTATCAAAACGGTGG 894
Query 901 TGCCACGAGAGAGATTGCTCCGGATAATGTTTATATGACTGCTCAGGAGATGGATCGAGA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TGCCACGAGAGAGATTGCTCCGGATAATGTTTATATGACTGCTCAGGAGATGGATCGAGA 954
Query 961 TAATCAGGAGTTGCAGGCAAGGTTTAACATTAGTTGGGGGTTTCAGGTTGATGAGAAACG 1020
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 955 TAATCAGGAGTTGCAGGCAAGGTTTAACATTAGTTGGGGATTTCAGGTTGATGAGAAACG 1014
Query 1021 AGTTCTTCATTTGGTTCGTTTGCATTTCTGCGATATCGTTAGTTCGTCGCTTAATCAGCT 1080
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1015 AGTTCTTCATTTGGTTCGTTTGCATTTCTGCGATGTCGTTAGTTCGTCGCTTAATCAGCT 1074
Query 1081 CTATTTCAATGTCTTTATCAATGAGTATCTTGCGTTTAAGGATGTTGATCTCTCCACGCT 1140
||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1075 CTATTTCAATGTCTTTATCAATGAGTATCTTGCGTATAAAGATGTTGATCTTTCCACGCT 1134
Query 1141 TACTTTCCATGTGCTTGCGTCTCCGTTGTACATTGATTTTGTTGCGGAGTCTGATCGTTC 1200
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1135 TACTTTCCATGTGCTTGCGTCTCCGTTGTACATTGATTTTGTTGCGGAATCTGATCGTTC 1194
Query 1201 TGGAATGTTGAGGATTAGTGTTGGACCGTCTGATCTTAGTAATCCGGCGAGAGTTAATGC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TGGAATGTTGAGGATTAGTGTTGGACCGTCTGATCTTAGTAATCCGGCGAGAGTTAATGC 1254
Query 1261 TCTATTGAATGGAGTTGAGATCATGAGGATTTTGAGCCCTGTGAGTTCTGAAGTGGTATC 1320
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1255 TCTATTGAATGGAGTTGAGATCATGAGGATTTTAAGCCCTGTGAGTTCTGAAGTGGTATC 1314
Query 1321 TGGAAAGAGGAATGTTGTCTGGATCGTGGTTGGCTCGGTTTTGGGAGGTTTTGTGTTCTT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TGGAAAGAGGAATGTTGTCTGGATCGTGGTTGGCTCGGTTTTGGGAGGTTTTGTGTTCTT 1374
Query 1381 GTCGCTGTTCTTCTTGAGCGTTTTGTGCTTGTGCAGGCGCAAGAACAACAAGACGAGGAG 1440
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1375 GTCGCTGTTCTTCTTGTGCGTTTTGTGCTTGTGCAGGCGCAAGAACAACAAGATGAGGAG 1434
Query 1441 TTCAGAGAGCACGGGATGGACACCTTTGAGGAGGTTTAGAGGCAGTTCCAATAGTAGAAC 1500
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TTCGGAAAGCACGGGGTGGACACCTTTGAGGAGGTTTAGAGGCAGTTCCAATAGTAGAAC 1494
Query 1501 AACTGAAAGAACTGTTAGTTCTAGTGGCTACCATACTCTGAGAATCTCGTTCGCGGAGTT 1560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1495 AACTGAAAGAACTGTTAGTTCTAGTGGCTACCATACTCTGAGAATCTCTTTCGCGGAATT 1554
Query 1561 ACAATCCGGAACCAATAACTTTGATAGAAGTTTAGTTATCGGAGTTGGCGGATTCGGGAT 1620
|||||||||||||||||||||||||| ||||||||| |||||||| |||||||| |||||
Sbjct 1555 ACAATCCGGAACCAATAACTTTGATAAAAGTTTAGTAATCGGAGTAGGCGGATTTGGGAT 1614
Query 1621 GGTTTTTAGAGGGTCTCTTAAAGACAACACCAAAGTAGCTGTGAAGAGAGGCTCTCCTGG 1680
||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1615 GGTCTTTAAAGGGTCTCTCAAAGACAACACCAAAGTAGCTGTAAAGAGAGGCTCGCCTGG 1674
Query 1681 TTCAAGACAGGGCTTACCAGAGTTTCTCTCTGAGATAACCATTCTCTCTAAGATCCGTCA 1740
|||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 1675 TTCAAGACAGGGCTTACCGGAGTTTCTATCTGAGATAACCATCCTCTCTAAGATCCGTCA 1734
Query 1741 TCGCCATCTAGTTTCACTTGTTGGGTATTGCGAAGAACAGTCTGAGATGATTCTTGTTTA 1800
||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1735 TCGCCATCTGGTTTCGCTGGTGGGGTATTGCGAAGAACAGTCTGAGATGATTCTTGTTTA 1794
Query 1801 TGAGTACATGGATAAAGGACCACTCAAAAGTCACTTATACGGATCCACCAACCCGCCTTT 1860
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1795 TGAGTACATGGATAAAGGACCCCTCAAAAGTCACTTATACGGATCCACCAACCCGCCTTT 1854
Query 1861 ATCTTGGAAACAACGGCTTGAGGTCTGCATTGGTGCAGCCAGAGGACTTCATTACCTTCA 1920
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 GTCATGGAAGCAACGGCTTGAGGTCTGCATTGGTGCAGCCAGAGGACTTCATTACCTTCA 1914
Query 1921 CACCGGTTCTTCGCAAGGAATCATCCACCGGGATATCAAATCCACCAATATCTTACTAGA 1980
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1915 CACCGGTTCTTCGCAAGGAATCATCCACCGGGATATCAAATCTACCAATATCTTACTAGA 1974
Query 1981 TAACAACTATGTAGCCAAAGTTGCAGACTTTGGACTCTCAAGATCCGGTCCTTGTATTGA 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 TAACAACTATGTAGCCAAAGTTGCAGACTTTGGACTCTCAAGATCCGGTCCTTGTATTGA 2034
Query 2041 TGAGACACATGTGAGCACCGGTGTAAAAGGAAGCTTTGGATATCTTGATCCTGAATACTT 2100
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2035 TGAGACACATGTGAGCACCGGTGTAAAAGGAAGCTTCGGATATCTTGATCCTGAATACTT 2094
Query 2101 CAGAAGACAACAGCTCACGGATAAGTCCGATGTTTATTCATTTGGTGTTGTTCTTTTTGA 2160
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 2095 CAGAAGACAACAGCTCACGGATAAATCCGATGTTTATTCATTTGGGGTTGTTCTTTTCGA 2154
Query 2161 AGTTCTTTGCGCTAGACCCGCTGTTGATCCGTTGCTTGTTAGGGAGCAAGTAAATTTAGC 2220
|||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 2155 AGTTCTTTGCGCTAGACCAGCTGTTGATCCATTGCTTGTTAGAGAGCAAGTCAATTTAGC 2214
Query 2221 AGAATGGGCAATAGAGTGGCAAAGGAAAGGGATGCTTGATCAGATCGTTGATCCGAATAT 2280
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 2215 AGAATGGGCAATCGAGTGGCAAAGGAAAGGGATGCTCGATCAAATCGTTGATCCGAAAAT 2274
Query 2281 CGCAGATGAAATCAAACCGTGCTCGTTGAAGAAATTCGCTGAAACCGCAGAGAAATGCTG 2340
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2275 CGCCGATGAAATCAAACCGTGCTCATTGAAGAAATTCGCTGAAACCGCCGAGAAATGCTG 2334
Query 2341 TGCGGATTACGGTGTAGATAGACCGACAATTGGCGATGTTCTATGGAACTTAGAACATGT 2400
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2335 TGCGGATTACGGCGTAGATAGACCGACAATTGGCGATGTTCTGTGGAATTTAGAACATGT 2394
Query 2401 GCTTCAGCTTCAAGAATCCGGACCATTGAACATTCCTGAAGAAGATTATGGAGATGTTAC 2460
||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2395 ACTTCAGCTTCAAGAATCAGGACCATTGAACAATCCTGAAGAAGTTTATGGAGATGTTAC 2454
Query 2461 CGACCCGAGAACGGCTCGGCAAGGTCTGTCTAATGGCTCGAACATAGAGAGAGACTATGG 2520
|||| || |||| ||||||||||||| ||||| ||||||||||| ||| || ||||||||
Sbjct 2455 CGACTCGGGAACAGCTCGGCAAGGTCCGTCTAGTGGCTCGAACACAGATAGGGACTATGG 2514
Query 2521 AGATGGAACTTCAGGCATAATCAGTAGCACCCAAGTGTTCTCTCAGCTAATGACCAACGC 2580
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 2515 AGATGGAACTTCAGGCATAATCAGTAGCAGCCAAGTCTTCTCTCAGCTAATGACCAACGC 2574
Query 2581 TGGGAGATAAATTAAAGTCATTGCTATATAGAGCAAGTATTTAT-CATAGTCATAGAGT- 2638
||| |||||||| ||||||||| || ||||||||||| | | || |||||||||||||
Sbjct 2575 TGGCAGATAAATAAAAGTCATTCCTGTATAGAGCAAG-AGT-ATTCATAGTCATAGAGGG 2632
Query 2639 ACAATACCTAAACCGGGAAACCAAAGCGGTGTACCGGTATCTCAGATTCGGTTCGTGTTT 2698
||||||| ||||||||||||||||||| ||||||||| |||| |||||| ||| ||||||
Sbjct 2633 ACAATACATAAACCGGGAAACCAAAGCAGTGTACCGGCATCTTAGATTCTGTTTGTGTTT 2692
Query 2699 GGTATAATTTTGTTTGGTT 2717
|||||||||||||||||||
Sbjct 2693 GGTATAATTTTGTTTGGTT 2711
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 2782 TACATTATTTGGTTAAATATTAAACCGGTT 2811
||||||||||||||||||||||||||||||
Sbjct 2711 TACATTATTTGGTTAAATATTAAACCGGTT 2740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106462234775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5