BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24020.1
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941931 jgi|Araly1|941931|scaffold_602475.1 1594 0.0
> Ahg941931 jgi|Araly1|941931|scaffold_602475.1
Length=1021
Score = 1594 bits (863), Expect = 0.0
Identities = 974/1027 (95%), Gaps = 9/1027 (1%)
Strand=Plus/Plus
Query 29 CTGAAGAAGCAGCAGCACTATCAATGGCGTCTCTGAGATTGTTCTCAACGAATCATCAAT 88
||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 CTGAAGAAGCA--A-CACTATCAATGGCGTCTCTGAGATTGTTCTCCACGAATCATCAAT 57
Query 89 CTCTTCTCCTTCCATCATCTCTCTCACA-AAAGACTCTAATATCTTCACCAAGATTCGTC 147
|||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 58 CTCTTCTCCTTCCATCGTCTCTCTCACACAAA-CCTCTAATATCTTCACCACGATTCGTC 116
Query 148 AATAACCCTAGCAGACGGAGTCCAATACGATCCGTTCTTCAATTTAATCGCAAACCGGAA 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AATAACCCTAGCAGACGGAGTCCAATACGATCCGTTCTTCAATTTAATCGCAAACCGGAA 176
Query 208 CTCGCCGGAGAAACGCCGCGTATCGTCGTTATCACCTCCGGAAAAGGCGGTGTTGGAAAG 267
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 177 CTCGCCGGAGAAACGCCGCGTATCGTTGTTATCACCTCCGGAAAAGGCGGTGTTGGAAAG 236
Query 268 ACGACAACCACCGCAAATGTCGGTCTCTCTCTCGCTCGTTACGGTTTCTCAGTTGTCGCC 327
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 237 ACGACAACCACCGCAAATGTCGGTCTCTCTCTAGCTCGTTACGGCTTCTCAGTTGTCGCT 296
Query 328 ATTGACGCCGACCTTGGTCTCCGTAACCTCGATCTCCTCCTAGGGTTAGAGAATCGAGTC 387
|||||||| |||||||| || ||||| ||||||||||| |||||||||||||||||||||
Sbjct 297 ATTGACGCTGACCTTGGACTTCGTAATCTCGATCTCCTTCTAGGGTTAGAGAATCGAGTC 356
Query 388 AATTACACTTGCGTCGAGGTTATAAACGGAGATTGTCGTCTCGATCAAGCTCTGGTACGT 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AATTACACTTGCGTCGAGGTTATAAACGGAGATTGTCGTCTCGATCAAGCTCTGGTACGT 416
Query 448 GATAAGCGTTGGTCGAATTTCGAATTGCTATGTATATCTAAACCTAGATCGAAACTTCCG 507
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 417 GATAAGCGTTGGTCGAATTTTGAATTGCTATGTATTTCGAAACCTAGATCGAAACTTCCG 476
Query 508 ATGGGATTTGGTGGTAAAGCATTGGAATGGCTTGTGGATGCGTTGAAAACTAGACCGGAA 567
|||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 477 ATGGGATTTGGTGGAAAAGCGTTGGAATGGCTTGTTGATGCGTTGAAAACGAGACCGGAA 536
Query 568 GGTTCACCGGATTTCATCATCATCGATTGTCCTGCAGGAATCGATGCCGGATTCATAACC 627
||||||||||| ||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct 537 GGTTCACCGGACTTCATTATCATTGATTGTCCTGCAGGAATCGATGCCGGGTTTATAACC 596
Query 628 GCCATTACTCCGGCGAATGAAGCAGTTCTGGTAACAACTCCGGATATAACAGCGTTAAGG 687
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||
Sbjct 597 GCCATTACTCCGGCGAATGAAGCAGTCCTGGTTACAACTCCGGATATAACAGCGCTAAGA 656
Query 688 GATGCTGATAGGGTTACGGGTTTGTTAGAATGCGATGGAAT-CAGAGATATAAAGATGAT 746
||||| ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct 657 GATGCAGATAGGGTTACGGGTTTGTTAGAATGCGACGGAATTC-GAGATATAAAGATGAT 715
Query 747 TGTGAACAGAGTGAGAACTGATATGATTAAAGGAGAGGATATGATGTCAGTGTTAGATGT 806
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 716 TGTGAACCGAGTGAGAACTGATATGATCAAAGGAGAGGATATGATGTCAGTGTTAGATGT 775
Query 807 GCAGGAGATGTTGGGATTGTCATTGCTTGGTGTAATTCCTGAAGATTCTGAGGTTATTCG 866
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 776 GCAGGAGATGTTGGGATTGTCATTGCTTGGCGTGATTCCTGAAGATTCTGAGGTTATTCG 835
Query 867 AAGCACGAATCGAGGGTTTCCGCTTGTTCTGAATAAGCCTCCTACGCTTGCGGGATTGGC 926
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 836 TAGCACGAATCGAGGGTTTCCGCTTGTTCTGAACAAGCCTCCAACGCTTGCGGGATTGGC 895
Query 927 GTTTGAGCAGGCGGCTTGGAGACTCGTTGAGCAAGATAGTATGAAGGCTGTTATGGTGGA 986
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 896 ATTTGAGCAGGCAGCTTGGAGACTCGTGGAGCAAGATAGTATGAAGGCTGTTATGGTGGA 955
Query 987 GGAAGAACCTAAGAAACGTGGCTTCTTCTCTTTCTTTGGCGGCTAAATGGCA-AACGGAT 1045
|||||| ||||||||||| ||||||||||||||||||||||||||||||||| || |||
Sbjct 956 GGAAGAGCCTAAGAAACGCGGCTTCTTCTCTTTCTTTGGCGGCTAAATGGCATAA-GGAG 1014
Query 1046 CGAACCG 1052
|||||||
Sbjct 1015 CGAACCG 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50550987942
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5