BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24030.1
Length=2389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489261 jgi|Araly1|489261|fgenesh2_kg.6__2395__AT5G24030.1 3568 0.0
> Ahg489261 jgi|Araly1|489261|fgenesh2_kg.6__2395__AT5G24030.1
Length=2362
Score = 3568 bits (1932), Expect = 0.0
Identities = 2234/2379 (94%), Gaps = 24/2379 (1%)
Strand=Plus/Plus
Query 18 ttttttCTATTTTCTCCTAATTCGTCTTCGCTTCTTTCCCTACC--AAAACACAATTCTT 75
|||||||||||| |||||||||| |||||||||||||||| ||| ||||||| ||||||
Sbjct 1 TTTTTTCTATTTCCTCCTAATTCTTCTTCGCTTCTTTCCCAACCAAAAAACACCATTCTT 60
Query 76 ATCTCTACAAGAATAAGAGAAGATCTGTAGATTTTAAACACCATTTCTGATTTCTACGGC 135
|||||||||||||| ||||||||||| ||||||| ||||| | | |||||||||||
Sbjct 61 ATCTCTACAAGAATTAGAGAAGATCTATAGATTTCAAACA-C----C--ATTTCTACGGC 113
Query 136 TGCAAAATTTCAAAATCGTCAGAGGAAAT-TAAAAAG-AAGaaaaaaaTGGAGGAGAAAC 193
||| ||||||| |||||| ||| | | | | | | || |||||||||||||||||||
Sbjct 114 TGC-AAATTTCCAAATCGCCAG-GTTAGTGTTAGGGGAAATAAAAAAATGGAGGAGAAAC 171
Query 194 CAAACTATGTGATACAAGTAGAAGAAGAGCTTCCAACTTTACTGAGAAAAGCCACAACAG 253
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 172 CAAACTATGTGATACAAGTAGAAGAAGAGCTTCCAAGTTTACTGAGAAAAGCTACAACAG 231
Query 254 AAGAAATGGTTGGCTTTGACAATTACAAAGAGAATGGTCATCCTTTTCCTCACTCAATCA 313
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 AAGAAATGGTTGGGTTTGACAATTACAAAGAGAATGGTCATCCTTTTCCTCACTCAATCA 291
Query 314 GTCGTTTTCATCCATCGCATGCCTCCACGACTACTTTGAATGGTCAAGAAACATCAAGAT 373
||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 292 GTCGTTTTCATCCTTCTCATGCCTCCACGACTACTTTGAATGGTCAAGAAGCATCAAGAT 351
Query 374 CAATAGACACAATGGAAGCTCATCATCATAACTACAATGAGACAACACCATGGACTCATC 433
|||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 352 CAATAGACACAATGGAAG--C-TCATCATAACTACAATGAGACACCACCATGGACTCATC 408
Query 434 AAAGAAAACCATCAATTTCAATGCCAACTTCACCAAATGTTCTCATGATCTCCGACCCGA 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 AAAGAAAACCATCAATTTCAATGCCAACTTCACCAAATGTTCTCATGATCTCCGACCCGA 468
Query 494 CAACATCTTTGTCTTCCGAAAACCACAAGAACAGTGGGTCGACTGGCAAATCCGTCAAGT 553
||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||||
Sbjct 469 CAACATCTTTGGCTTCCGAAAACAACAAGAACAGTGGGTCGACTGGGAAATCTGTCAAGT 528
Query 554 TTCTCTCTCAGCCGATGACCAAAGTCTCATCTCTCTACATAGAAAGCGGTAATGGTGATG 613
||||||||||||| ||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 529 TTCTCTCTCAGCCAATGACCAAAGTCTCATCTCTCTACATAGAAACCGGTAACGATGATA 588
Query 614 ATGATCGTCGTCAAAGCCATGATAatcatcatcatcatcttcatcgacaacatcagagtg 673
|||||||||||| ||||||||| | |||||||||||| ||| | ||||||||||| ||
Sbjct 589 ATGATCGTCGTCTTAGCCATGAT-A--ATCATCATCATCGTCAACAACAACATCAGAATG 645
Query 674 gtcatcatcaaaatcaaaatcaGGCTGCGAACAAGCTTAAAGACAACAGGTACAACTCGT 733
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 646 GTCATCATCAAAATCAAAATCCGGCGGCGAACAAGCTTAAAGACAACAGGTACAACTCGT 705
Query 734 TCAAGACTTGGTCGGGGAAACTTGAGAGACAATTCACAAGAAAACCAGCTTCTGTTGAAC 793
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 706 TCAAGACTTGGTCGGGGAAACTCGAGAGACAATTCACAAGAAAACCAGCTTCTGTTGAAC 765
Query 794 CGGAGGCACCAAACCGGAATAACCAAAATTTGAATACCAATGAAGCCATGCCTGTGGACC 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 CGGAGGCACCAAACCGGAATAACCAAAATTTGAATACCAATGAAGCCATGCCTGTGGACC 825
Query 854 GTTACTATGACGCCTTAGAAGGTCCTGAATTAGAGACCCTACGGCCTCAAGAAGAGATCG 913
| |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 826 GCTACTATGATGCCTTAGAAGGTCCTGAATTAGAGACTCTACAGCCTCAAGAAGAGATCG 885
Query 914 TTCTACCAAATGATAAAAAGTGGCCGTTTCTTCTCCGTTACCCCATTTCCACCTTCGGTA 973
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 886 TTCTACCAAATGATAAAAAGTGGCCGTTTCTTCTCCGTTACCCGATCTCCACCTTCGGTA 945
Query 974 TGTGCCTAGGAGTGAGCAGCCAAGCCATAATGTGGAAAACCCTAGCCACTGCAGAGCCAA 1033
||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 946 TGTGCCTCGGAGTGAGCAGCCAAGCCATAATGTGGAAAACTCTAGCCACCGCGGAGCCAA 1005
Query 1034 CCAAGTTCCTCCACGTACCCCTCTGGATCAACCAGGGTCTATGGTTCATTTCAGTGGCTT 1093
||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1006 CCAAGTTTCTCCATGTACCCCTCTGGATCAACCAGGGTCTCTGGTTCATCTCAGTCGCTT 1065
Query 1094 TGATCCTCACTATCGCCACCATCTACCTCCTCAAGATCATCCTTT-TCTTCGAAGCCGTA 1152
||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1066 TGATCTTCACTATCGCCACCATCTACCTCCTCAAGATCATCCTTTAT-TTCGAAGCCGTA 1124
Query 1153 CGCCGCGAATACTACCATCCAATCAGAATCAACTTCTTCTTTGCTCCTTTCATTTCTTTA 1212
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1125 CGCCGCGAATACTACCATCCAATTAGAATCAACTTCTTTTTTGCTCCTTTCATTTCTTTA 1184
Query 1213 CTCTTCCTTGCCCTCGGTGTCCCACCTTCCATAATTACAGATTTGCCGCATTTCCTTTGG 1272
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1185 CTCTTCCTGGCCCTCGGTGTCCCACCTTCCATAATTACAGATTTGCCACATTTCCTTTGG 1244
Query 1273 TACCTCCTCATGTTTCCATTCATCTGTCTTGAGCTTAAGATCTACGGTCAGTGGATGTCC 1332
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1245 TACCTCCTCATGTTTCCTTTCATCTGTCTTGAGCTTAAGATCTACGGTCAATGGATGTCC 1304
Query 1333 GGTGGTCAACGACGGCTCTCCCGGGTCGCCAACCCGACCAACCATCTCTCGGTCGTTGGG 1392
||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1305 GGTGGTCAACGCCGGCTCTCCCGAGTCGCCAACCCGACCAACCATCTCTCAGTCGTCGGG 1364
Query 1393 AACTTTGTTGGGGCCTTGCTTGGTGCGTCCATGGGGCTTAGAGAAGGCCCTATATTCTTC 1452
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 AACTTTGTCGGGGCCTTGCTTGGTGCGTCCATGGGGCTTAGAGAAGGCCCTATATTCTTC 1424
Query 1453 TATGCTGTTGGGATGGCTCATTACTTGGTTCTGTTCGTGACTCTCTACCAAAGGCTACCG 1512
|| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1425 TACGCTGTTGGGATGGCTCACTACTTGGTTCTGTTTGTGACTCTCTACCAAAGGCTACCG 1484
Query 1513 ACCAACGAGACTTTGCCTAAAGATCTTCATCCTGTCTTCTTCCTCTTCGTTGCGGCTCCA 1572
||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||
Sbjct 1485 ACCAACGAGACTTTGCCTAAAGATCTTCACCCTGTATTCTTCCTCTTTGTCGCGGCTCCA 1544
Query 1573 AGTGTTGCTTCCATGGCTTGGGCTAAGGTCACTGGCTCCTTCGATTATGGCTCCAAAGTT 1632
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1545 AGTGTTGCTTCCATGGCTTGGGCTAAGGTCACTGGCTCCTTTGATTATGGCTCCAAAGTT 1604
Query 1633 TGTTACTTTATCGCCATTTTCCTCTATTTCTCATTGGCTGTTCGGATCAATTTCTTCAGG 1692
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1605 TGTTACTTTATCGCCATTTTCCTCTATTTCTCATTGGCTGTTCGGATTAATTTCTTCCGG 1664
Query 1693 GGAATCAAATTTTCGCTGTCCTGGTGGGCGTACACCTTTCCGATGACCGGAGCTGCAATT 1752
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 1665 GGAATCAAATTTTCGCTGTCTTGGTGGGCGTACACATTTCCGATGACCGGGGCTGCAATT 1724
Query 1753 GCTACCATCAGGTACGCAACAGTGGTTAAGAGCACTATGACTCAAATCATGTGTGTGGTC 1812
|| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1725 GCAACCATCAGATACGCAACAGTGGTTAGGAGCACTATGACTCAAATCATGTGTGTGGTC 1784
Query 1813 CTATGTGCCATTGCAACGTTAGTCGTGTTCGCACTGCTCGTGACCACCATTATCCACGCC 1872
|| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 1785 CTCTGTGCCATTGCAACGTTGGTCGTATTCGCACTGCTTGTGACCACCATTATCCACGCC 1844
Query 1873 TTTGTCCTCCGAGATCTTTTTCCCAATGACCTCGCCATAGCCATCAGCAACCGTCCGAGA 1932
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1845 TTTGTTCTCCGGGATCTTTTTCCCAATGACCTCGCCATAGCCATCAGCAACCGGCCGAGA 1904
Query 1933 CCCAAACAGAATAGCCAACACCGGTGGCTTGACCAACTGAGAAACGTAAGCTCAGAGAAC 1992
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1905 CCCAAACAGAATAGCCATCACCGGTGGCTTGACCAATTGAGAAACGTAAGCTCAGAGAAC 1964
Query 1993 ATCGAGAACTACTTGAAATTCACAGACTCCGACAGCAGTCAGAGTAATGATGTAGAAGCT 2052
|||||||| |||||||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 1965 ATCGAGAATTACTTGAAATTCACAGACTCCGACAGCACTCATAGTAATGATTTAGAAGCT 2024
Query 2053 TGCAACGGCAAAACTCAAGAGAGTGATTCATCATAAATTGGAGAATCACGAAAAAAGTTT 2112
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 2025 TGCAACGGCAAAACTCAAGAGAGTGATTCATCATAAATTGGAAAATCATTAAAAAAAAAT 2084
Query 2113 TCATAACCCCTAATACAGAGTCGTATCCGAAGTTTTGGTTTTGGTTTGTTGTCAGTGTCT 2172
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2085 TCATAACCCCTGGTACAGAGTCGTATCCGAAGTTTTGGTTTTTATTTGTTGTCAGTGTCT 2144
Query 2173 CTGACACAAGTGAGGAACCTAGTAACG-TAATTGTTGCTGTGGTTCTAATGATCATGTGT 2231
||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||
Sbjct 2145 CTGACACAAGTGAGGAACCTAGTAACGGTAAT-GTTGCTGTGGTTCTAATGAGCATGTGT 2203
Query 2232 TTAAA-GCAGTATTAAGTAAACGGGAGGGGTTGTCTACAATGGTGAACCAATCCAAACGA 2290
|||| | |||| |||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2204 GTAAAAGTAGTAGTAAGCAAACGATAGGGGTTGTCTACAATGGTGAGCCAATCCAAACGA 2263
Query 2291 CCCAGTATCTCTTAAACCAGAACTGTTAGCAGTTATCATAATACTTCAAAGAGCATGTAT 2350
||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||
Sbjct 2264 CCCAGTATCTCCTAAACCGGAACTGTTAACAGTTATCACAATACTTCAAAGAGCATGTAA 2323
Query 2351 ACTTGTTTTGTTCCAATAAATAAAAAGTTTTGAGGGGTT 2389
|||||||||||||||||||||||||||||||||||||||
Sbjct 2324 ACTTGTTTTGTTCCAATAAATAAAAAGTTTTGAGGGGTT 2362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90007248935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5