BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24040.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326692 jgi|Araly1|326692|fgenesh1_pm.C_scaffold_6001912 1703 0.0
Ahg941933 jgi|Araly1|941933|scaffold_602477.1 429 2e-119
Ahg941935 jgi|Araly1|941935|scaffold_602479.1 351 5e-96
> Ahg326692 jgi|Araly1|326692|fgenesh1_pm.C_scaffold_6001912
Length=1122
Score = 1703 bits (922), Expect = 0.0
Identities = 1058/1124 (94%), Gaps = 8/1124 (1%)
Strand=Plus/Plus
Query 1 ATGGTAAAATGGTCGGAGTTGCCACCGGAGATTCTCCACTT-GATCTCCCTTAAAATCGA 59
||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||
Sbjct 1 ATGGTAAAATGGTCGGACTTGCCACCGGAGATTCTCCA-TTCGATCTCCCTAAAAATCGA 59
Query 60 CAATCCCTTTGATCTGATCCACTTTCGGTCAGTTTGTTCCTTTTGGCGATCCTCTAGTCT 119
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 60 CAATCCCTTTGATCTGATCCACTTTCGGTCGGTTTGTTCCTTTTGGCGATCTTCTAGTCT 119
Query 120 CCTCAAATTCAGACACATGACATCACTTAGATGTCCTCTTCCCCTTGATCCCGGCGGTTG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCTCAAATTCAGACACATGACATCACTTAGATGTCCTCTTCCCCTTGATCCCGGCGGTTG 179
Query 180 TGGTGATGATTGCCATATCTTGAGCAGCCGTGTCTACCTTCTCAAGTGTCCTAATCGTGA 239
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||
Sbjct 180 TGGTGATGATTGCCATATCTTGAGCAGCCGTGTTTACCTTCTCAAGTCTCCTAATCGCGA 239
Query 240 CCGTCCCCAATATTGGATGTTTAAACTACAAGCTAAAGAGAATGGAGAAGTTGTTCTACA 299
|||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 240 CCGTCCCCAATATTGGTTGTTTAAGCTACAAGCAAAAGAGAATGGAGAAGTTGTTCTACA 299
Query 300 TAGTTTGTTCTTAAGAAGAAACTCCTCTGCGTATGGATGCTTGTATCCAAGTCTATCTA- 358
||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 300 TAGTTTGTTCTTAAGAAGACACTCCTCTGCGTATGGATGCTTGTATCCAAGTCTGTC-AC 358
Query 359 TTGATTTGCTCAATTGTCAAATCTTTGAGCTAGCGCAAGAACATGTGGCTTGTTACAGCG 418
|||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 359 TTGATTTGCTTAATTGTCAAATCTTTGAGCTAGCGAAAGAACATGTGGCATGTTACAGCG 418
Query 419 AATGGTTTGAATTATTTGAATGCATTTCAAAATGTGAAGAACGTATCGGATTTATGGGTC 478
|||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 419 AATGGTCTGAATTATTCGAATGCATTTCAAAATGTGAAGAACGTATCGGCTTTATGGGTT 478
Query 479 TAAACAGAGAGAAAAACGAATATATGATTCTAGGGAAGCTCTCATTCAATGGTCTCGCAA 538
||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TAAGCACAGAGAACAACGAATATATGATTCTAGGGAAGCTCTCATTCAATGGTCTCGCAA 538
Query 539 TGTATAGGTCAGTCGATAACCGTTGGACTGAGCTCGAGATAA-C-ACCCGATTCATTTTT 596
||| ||||||||||||||| |||||||||||||| | ||||| | | |||||||||||
Sbjct 539 TGTTTAGGTCAGTCGATAAGCGTTGGACTGAGCTTGGGATAATCTAT--GATTCATTTTT 596
Query 597 TGAAGGGATAGTTCCATTTAAAGGCAAGTTTTACGCGATAGATCGCACCGGAAAAACAAC 656
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 597 TGAAGGGATAGTTCCATTTAAAGGTAAGTTTTACGCAATAGATCGCACTGGAAAAACAAC 656
Query 657 AGTGGTAGATCCAACACTAGAAGTGAATACATTTCAGCGGTCAAGACCTTGTGATAAGAC 716
||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 657 AGTGGTAGAGCCAACTCTAGAAGTGAATACATTTCAGCGGTCAAGGCCTTGTGATAAGAC 716
Query 717 AAGGAAACGTTGGCTTTTAATGACAGGGGACAAACTCATTCTCGTAGAGATGTGCACAAA 776
|||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 717 AAGGAAACGTTGGCTTGTAATGTCAGGGGACAAACTCATACTCGTAGAGATGTGCACAAA 776
Query 777 GAGCCGATACGATTTTCACATACCAAATATCCGTGAGAAAAAGATATGGTTCGAAATATC 836
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 777 GAGCCGATACGATTTTCACATACCAAACATCCGTGAGAAAAAGATATGGTTCGAAATATC 836
Query 837 AGAGTTAAACGAGGAAAGAAACGATTGGGATCAAGTGGAAGATATGGACGGTCGTGTGTT 896
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 837 AGAGTTAAACGAGGAAAGAAACGATTGGGATCAAGTGGAAGATATGGATGGTCGCGTGTT 896
Query 897 GTTCTTGGAGCATTATTGTACCTTCTCATGCTTGGCTACTGAAATTCCAGGGTTTAGGGC 956
|||||||||||||||||| | |||||||||||||||||||| ||||| |||||||||||
Sbjct 897 GTTCTTGGAGCATTATTGCAGTTTCTCATGCTTGGCTACTGAGATTCCGGGGTTTAGGGC 956
Query 957 TAACTCTATAATCTTCATGGACTTGTGGGGAGGATCTAACTCATATGAACTTGAAAGCAT 1016
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 957 TAACTCTATAATCTTCATGGACTTGTGGGGAGGATCTAACTCGTATGAACATGAAAGCAT 1016
Query 1017 TCTCGTGTATGAATTCAATGAGAAAGGCGTAAGATCTTTAAGAGATAAATTGGAGTATAT 1076
|||||| |||||||| ||||| |||| ||||| |||||| ||||||| |||||||||
Sbjct 1017 TCTCGTATATGAATTTGATGAGCAAGGAATAAGAACTTTAATAGATAAACAGGAGTATAT 1076
Query 1077 AGAGCTGTTTCCATTTCCCCCTGGTTGGGTAATCTCCAACGGAT 1120
|||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1077 AGAGCTGTTTCCATCTCCCCCTGGTTGGGTAATCTCCAACAGAT 1120
> Ahg941933 jgi|Araly1|941933|scaffold_602477.1
Length=301
Score = 429 bits (232), Expect = 2e-119
Identities = 277/299 (93%), Gaps = 2/299 (1%)
Strand=Plus/Plus
Query 746 ACAAACTCATTCTCGTAGAGATGTGCACAAAGAGCCGATACGATTTTCACATACCAAATA 805
|||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| || |
Sbjct 1 ACAAACTCATTCTCATAGAGATGTACACAAAGAGTCGATACGATTTTCACATACCTAACA 60
Query 806 TCCGTGAGAAAAAGATATGGTTCGAAATATCAGAGTTAAACGAGGAAAGAAACGATTGGG 865
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCGTGAGAAAAATATATGGTTCGAAATATCAGAGTTAAACGAGGAAAGAAACGATTGGG 120
Query 866 ATCAAGTGGAAGATATGGACGGTCGTGTGTTGTTCTTGGAGCATTATTGTACCTTCTCAT 925
||||||||||||||||||| ||| | ||||||||||||||||||||||| || || ||||
Sbjct 121 ATCAAGTGGAAGATATGGATGGTAGCGTGTTGTTCTTGGAGCATTATTGCACTTTTTCAT 180
Query 926 GCTTGGCTACTGAAATTCCAGGGTTTAGGGCTAACTCTATAATCTTCATGGACTTGTGGG 985
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 181 GCTTGGCTACTGAGATTCCGGGGTTTAGAGCTAACTCTATAATCTTCATGGACTTGTGGG 240
Query 986 GAGGATCTAACTCATATGAACTTGAAAGCATTCTCGTGTATGAAT-TCAATGAGAAAGG 1043
||||||||||||| ||||||| |||||||||||||||||| |||| | | | |||||||
Sbjct 241 GAGGATCTAACTCGTATGAACATGAAAGCATTCTCGTGTAAGAATATGA-TCAGAAAGG 298
> Ahg941935 jgi|Araly1|941935|scaffold_602479.1
Length=1115
Score = 351 bits (190), Expect = 5e-96
Identities = 750/1007 (74%), Gaps = 91/1007 (9%)
Strand=Plus/Plus
Query 10 TGGTCGGAGTTGCCACCGGAGATTC-TCCACTTGATCTCCCTTAAAATCGACAATCCCTT 68
|||||||||||||||| |||| || ||||| |||| || | | ||| ||||| |||||
Sbjct 30 TGGTCGGAGTTGCCACTAGAGA-TCATCCACATGATATCAGTGAGAATTGACAACCCCTT 88
Query 69 TGATCTGATCCACTT-TCGGTCAGTTTGTTCCTTTTGGCGATCCTCTAGTCTCCTCAAAT 127
||||||||||| || || || || ||||||| ||||||||||| || || |||| ||
Sbjct 89 CGATCTGATCCA-TTACCGATCGGTATGTTCCTCATGGCGATCCTCGAGCCTTCTCACAT 147
Query 128 TCAGACACA-TGACATCACTTAGATGTCCTCTTCC-CCTTGATCCCGGCGGTTGTGGTGA 185
|| ||| || | ||||||||||||||||| |||| || ||| || | |||| ||
Sbjct 148 TCCGAC-CAGTTCCATCACTTAGATGTCCTGTTCCACC-AGAT----GCCG--GTGGAGA 199
Query 186 TGATTGCCATATCTT-GAGCAGCCGTGTCTACCTTCTCAAGTGTC---CTAATCGTGACC 241
|||||| |||| || || || ||||| || || |||||| || || | ||| |||
Sbjct 200 TGATTGTTATAT-TTCAAGGAGTCGTGTTTATCTGATCAAGTCTCTTTCT-AGCGT-ACC 256
Query 242 GTCCCCAATATTGGATGTTTAAACTACAAGCTAA-A-GAGAATGGAGAAGTTGTTCTACA 299
| ||||| |||| ||||||| |||| || || | |||||| | | | ||| ||| ||
Sbjct 257 -TTTCCAATTTTGGTTGTTTAAGCTACTAG--AAGAGGAGAAT-G-G-ACTTGCTCTGCA 310
Query 300 TAGTTTGTTC-TTAAGAAGAAACTCCTCTGCGTATGGATGCTT-GTATCCAAGTCTATCT 357
| ||||||| | ||||||| || ||||| || ||||| || ||||||||| | ||
Sbjct 311 CATTTTGTTCAGT-AGAAGAACCTTCTCTGTGTGGGGATG-TTCATATCCAAGTTTGTC- 367
Query 358 A-TTGATTTGCTCAATTGTCAAATCTTTGAGCTAGCGCAAGAACATGTGGCTTGTTACAG 416
| |||| |||||||| | |||| || |||||||||| ||||||||||| ||||||||||
Sbjct 368 ACTTGACTTGCTCAACTCTCAAGTCATTGAGCTAGCTCAAGAACATGTTGCTTGTTACAC 427
Query 417 CGAATGGTTTGA-ATTATTTGA--ATGCA-TTT-C-AA-AATG--TGAAGAACGTATCGG 467
| |||| || || || || ||| | ||| | || || | ||| || |||| ||
Sbjct 428 CTCTTGGTGCGACCTT-TTCGATGATG-ATTTTGCGAATAAAGAAGGAA-AAAGTATTGG 484
Query 468 ATTTATG-GGTCTAAACAG-AGAGAAAAACGAATATATGATTCTAGGGAAG-CTCTCATT 524
|||||| || || | | |||||| || |||| ||| ||| | | |||| |||||| |
Sbjct 485 TTTTATGCAGT-TAGA-TGCAGAGAACAAGGAATTTATAATT-TTGCGAAGACTCTCAAT 541
Query 525 CAATGGTC-TCGCAATGTATAGGTCAGTCGATAACCGTTGGACTGAGCTCGAGATA-ACA 582
| | || | | || |||||||||||| | ||||| ||||||| ||| |||||||| | |
Sbjct 542 CCAGGGACTTGGC-ATGTATAGGTCATTTGATAAGTGTTGGACCGAGATCGAGATAGA-A 599
Query 583 CCCGATTCATTTT-TTGAAGGGA-TAG-TTCCATTTAAAGG-CAAGTTTTACGCGATAGA 638
|| || || |||| | ||| | | ||| | | | ||| || | | ||||| || || ||
Sbjct 600 CCTGA-TCGTTTTCTAGAA-GCAGTAGCGT-CGTATAACGGACTA-TTTTATGCCATCGA 655
Query 639 -TCGCACCGGAAAAACAACAGTGGTAGATCCAACACTAGAAGTGAA-TACATTTCAGCGG 696
|| |||||| || | ||||||| | ||| | ||||||||||| | | ||||| |||
Sbjct 656 TTC-TACCGGAGTAATGATAGTGGTAAAGCCATCTCTAGAAGTGAACT-CGTTTCATCGG 713
Query 697 TCAAGACCTTGTGATAAGACAAGGAAACGTTGGCTTTT-AATGACAGG-GGACAAACTCA 754
|| || |||||||||||||||||||||||||||||| || | || ||| ||||||
Sbjct 714 TCGAGGCCTTGTGATAAGACAAGGAAACGTTGGCTTGCCAA-GTT-GGAGGAGAAACTCC 771
Query 755 TTCTCGTAGAGATGTGCACA-AAGAGCCGATACGATTTTCACATACCAAATA-TCCGT-G 811
| || |||||||| ||||| || |||| | | || | || || |||||| | ||| | |
Sbjct 772 TACTAGTAGAGATCTGCACCGAA-AGCCAAAAGGAGTATCTCACACCAAA-ACTCC-TAG 828
Query 812 AGAAAAAGATATGGTTCGAAATATCAGAGTTAAACGAGGAA-AGAAACGATTGGGAT-CA 869
| ||||| ||||||||| || || |||||| ||||| || |||||||||||| || ||
Sbjct 829 CGGAAAAGGGATGGTTCGAGATTTCGGAGTTAGACGAG-AAGAGAAACGATTGG-ATTCA 886
Query 870 AGTGGAAGATATGGACGGTCGTGTGTTGTTCTTGGA--GCATTATTG-TACCTTCTCATG 926
|||||||||| ||| |||| || ||||||||||| || |||| | | ||||| ||
Sbjct 887 AGTGGAAGATGTGGGTGGTCACGTCTTGTTCTTGGACTGCC--ATTGCT-CTTTCTCTTG 943
Query 927 CTTGGCTACTGAAATTCCAGGGTTT-AGGGCTAACTCTATAATCTTC 972
| || ||||| ||||||| |||||| || | ||||||||||| |||
Sbjct 944 CCTGCCTACTCAAATTCC-GGGTTTTAGACCCAACTCTATAATTTTC 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5