BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24050.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930567 jgi|Araly1|930567|scaffold_303024.1 1338 0.0
Ahg905663 jgi|Araly1|905663|Al_scaffold_0003_2791 1336 0.0
Ahg480001 jgi|Araly1|480001|fgenesh2_kg.3__2702__AT3G24850.1 902 0.0
Ahg497170 jgi|Araly1|497170|fgenesh2_kg.26__5__AT5G24050.1 616 1e-175
Ahg930645 jgi|Araly1|930645|scaffold_303102.1 614 5e-175
Ahg930646 jgi|Araly1|930646|scaffold_303103.1 255 3e-67
Ahg930632 jgi|Araly1|930632|scaffold_303089.1 182 6e-45
Ahg887802 jgi|Araly1|887802|Al_scaffold_0123_3 86.1 5e-16
> Ahg930567 jgi|Araly1|930567|scaffold_303024.1
Length=1079
Score = 1338 bits (724), Expect = 0.0
Identities = 954/1060 (90%), Gaps = 35/1060 (3%)
Strand=Plus/Plus
Query 1 ATGACTAGTATCTATCACGATGATGAC-GATCATCTCACGGCTTCAGGTAAAGACCTGTG 59
||||||||| | |||||| | || | |||||||||||||||||||| || ||||||||
Sbjct 21 ATGACTAGTCTGTATCAC-A--AT-TCTGATCATCTCACGGCTTCAGGGAAGGACCTGTG 76
Query 60 GTCGAATTTCTGTGTACTGGTTGATGCGGCGGTTATGTTATATgaagaagaagaagaaga 119
|| ||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 77 GTTGAATTTCTGTGTACTGGTTGATGCGGCAGTTATGTTATAT---------GAAGAAGA 127
Query 120 acaacgtcgtaagattgtctctgaagaagaagaagaattc-cagaagagaaTCTTTTGTC 178
||||||||||||||||||||| ||||||||||||| | | ||| |||||||||||||||
Sbjct 128 ACAACGTCGTAAGATTGTCTCCGAAGAAGAAGAAG-AGGCACAGCAGAGAATCTTTTGTC 186
Query 179 TCTTCCCGAGAAAAACAAGATCGTCTTTGGTGAAGAGACAACAAAATCTTATTAGGG--- 235
|||||||||||||||||||||||||||||||||||||||||||||| |||| | |||
Sbjct 187 TCTTCCCGAGAAAAACAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAATGGGGTTT 246
Query 236 -T--TTCTACTTCTTCATCGCTTATCGATCTTAACCAGTTCCCTACCGATTCTGAGATCG 292
| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 247 CTACTTCTACTTCTTCATCGCTTATCGATCTTAACCAGTTCCCTACTGATTCTGAGA-C- 304
Query 293 AAGACCCACAAAACCATCTTCAAG-GGCTATCCTCTTCATGTTTCATTGCCGCTAATTCC 351
||| |||||||||||||| || |||||| ||||||||||||| | |||| |||||
Sbjct 305 -AGA---ACAAAACCATCTTC-AGTTGCTATCTTCTTCATGTTTCA-T--CGCTGATTCC 356
Query 352 GAGACAAAAACATTACAAAACCCTAGTTCAGAACCTTGTTCTTCACTCGGACTCTTTGGT 411
|||| ||||| |||||||||||||||| ||| ||||||||||||||| |||||||| |
Sbjct 357 GAGATGAAAACCCTACAAAACCCTAGTTCTGAATCTTGTTCTTCACTCGTACTCTTTGAT 416
Query 412 CACAAGACGGCTGAGTACC-AAAAGACGGAGACGAAAGACCCACCAAACCCTAATTTCCC 470
||||||||||||||| || | |||||||||||||||||||||| ||||| |||||||||
Sbjct 417 TACAAGACGGCTGAGT-CCGAGAAGACGGAGACGAAAGACCCACTAAACCGTAATTTCCC 475
Query 471 ATGTACTATGTCTTTGTGCCTAATGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACA 530
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 476 ATGTTCTATGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACA 535
Query 531 AAGGAAGCGTAGTGGTGGAGTCAAGAAAGCAAATGTTGCTCCTTTTTCACAAACGGCGAG 590
||||| ||| ||||||||||||||||||||| |||||| || |||| ||||||
Sbjct 536 GAGGAAACGTTCTGGTGGAGTCAAGAAAGCAAAGGTTGCTTGTTCTTCAGGGACGGCGCC 595
Query 591 AGAGACACCTGAGTGGCTTGTCAAGGTGATGACAAACATGAAAGAAGCCAAAGACGCTAA 650
|||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 596 AGAGACACCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCTAAAGACGCTAA 655
Query 651 ATTGATCTTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACAAAGAACCGTCTCTC 710
| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 656 ACTGATCTTTGAGAAGACACTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTC 715
Query 711 AATGCCTTTCAACAACTTACTCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAATCAT 770
|||||||||||||||||||||||| |||||||| |||| | || ||||||| ||||||
Sbjct 716 AATGCCTTTCAACAACTTACTCCGCAACGATTTTTTGACACCAGTAGAGTCCAGAATCAT 775
Query 771 AAACGAAGACATCAACAACAATAACAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACG 830
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 776 AAACGAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGCGATTCTCGTTGATCAACG 835
Query 831 GTGTAAAAAGTGGGGTGTGATGTTAAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGG 890
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 836 GTGTGAAAAGTGGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGG 895
Query 891 AAGCTGGAGTTACAATTTGATTTGTGGGTGGAACGACATCGTTGAGGCTAACAGATTGAA 950
|||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 896 AAGCTGGAATTACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAATGGATTGAA 955
Query 951 AGAAGGCGACAACATTACTCTTTGGTCGTTTAGGTGCTGTGGAATCCTCTGCTTTGCCAT 1010
||| ||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 956 AGAGGGCGACAACATTAGTCTTTGGTCGTTTAGGTGCTGTGAAATCCTTTGCTTTGCCAT 1015
Query 1011 GGAACAGAGTAGCTCTTCCCTTGCTCTCTGTCTCTGCTAA 1050
||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GGAACAGAGTAGCTCTTCCCTTGCTCTCTGTCTCTGCTAA 1055
> Ahg905663 jgi|Araly1|905663|Al_scaffold_0003_2791
Length=1038
Score = 1336 bits (723), Expect = 0.0
Identities = 956/1063 (90%), Gaps = 38/1063 (4%)
Strand=Plus/Plus
Query 1 ATGACTAGTATCTATCACGATGATGACGATCATCTCACGGCTTCAGGTAAAG-ACCTGTG 59
|||| || ||| ||||||||| | |||||||||||||||||||||| ||| |||||||
Sbjct 1 ATGAATATTATGTATCACGAT--T-ACGATCATCTCACGGCTTCAGG-GAAGAACCTGTG 56
Query 60 GTCGAATTTCTGTGTACTGGTTGATGCGGCGGTTATGTTATATgaagaagaagaagaaga 119
||||||||||| ||||||||||||||||||||| ||||||||| |||||| |
Sbjct 57 GTCGAATTTCTTTGTACTGGTTGATGCGGCGGTAATGTTATAT---------GAAGAACA 107
Query 120 acaacgtc-gtaagattgtctctgaagaagaagaagaattc-cagaagagaaTCTTTTGT 177
|||||| | ||||||||||||| ||||||||||||| | | ||||||||||||||||||
Sbjct 108 ACAACG-CAGTAAGATTGTCTCCGAAGAAGAAGAAG-AGACACAGAAGAGAATCTTTTGT 165
Query 178 CTCTTCCCGAGAAAAACAAGATCGTCTTTGGTGAAGAGACAACAAAATCTTATTAGGGTT 237
||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 166 CTCTTCCCGAGAAAAACAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTAAT-GGGTT 224
Query 238 T----CT---ACTTCTTCATCGCTTATCGATCTTAACCAGTTCCCTACCGATTCTGAGAT 290
| || |||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 225 TTTAACTTCTACTTCTTCATCGTTTATCGATCTTAACCAGTTCCCTACTGATTCTGAGA- 283
Query 291 CGAAGACCCACAAAACCATCTTCAAGG--GCTATCCTCTTCATGTTTCATTGCCGCTAAT 348
| | || |||||||||||||| || |||||| |||||||||||||| ||||| ||
Sbjct 284 C-A-GA---ACAAAACCATCTTC--GGTTGCTATCTTCTTCATGTTTCATCCCCGCTGAT 336
Query 349 TCCGAGACAAAAACATTACAAAACCCTAGTTCAGAACCTTGTTCTTCACTCGGACTCTTT 408
|||||||| ||||| |||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 337 TCCGAGACGAAAACCCTACAAAACCCTAGTTCTGAACCTTGTTCTTCACTCGTAGTCTTT 396
Query 409 GGTCACAAGACGGCTGAGTACCAAA-AGACGGAGACGAAAGACCCACCAAACCCTAATTT 467
| | |||||| |||||||| || | ||| |||||||||||||||| ||||||||||||
Sbjct 397 GATTACAAGATGGCTGAGT-CCGAGGAGAGGGAGACGAAAGACCCAGTAAACCCTAATTT 455
Query 468 CCCATGTACTATGTCTTTGTGCCTAATGGAGAACACAAGCCGCAAGAGACGTGCTGTGGA 527
| |||| || ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 456 TCAATGTTCTTTGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGA 515
Query 528 ACAAAGGAAGCGTAGTGGTGGAGTCAAGAAAGCAAATGTTGCTCCTTTTTCACAAACGGC 587
||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 516 ACAGAGGAAGCGTACTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTTTTCACAAACGGC 575
Query 588 GAGAGAGACACCTGAGTGGCTTGTCAAGGTGATGACAAACATGAAAGAAGCCAAAGACGC 647
||||||| | ||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 576 GAGAGAGGCGCCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGCCAAAGACGC 635
Query 648 TAAATTGATCTTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACAAAGAACCGTCT 707
|||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 636 TAAACTGATCTTTGAGAAGACTCTGTTCGTGACTGATGTGAACCCAACACAGAACCGTCT 695
Query 708 CTCAATGCCTTTCAACAACTTACTCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAAT 767
|||||||||||||||||||||| |||| ||||||||| |||| ||||||||||||| |||
Sbjct 696 CTCAATGCCTTTCAACAACTTAATCCGGAACGATTTCTTGACCTCTGTGGAGTCCAGAAT 755
Query 768 CATAAACGAAGACATCAACAACAATAACAAGATTGGAGTGGGAGCGATTCTCGTGGATCA 827
|||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 756 CATAGACAAAGACATCAACAACGATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCA 815
Query 828 ACGGTGTAAAAAGTGGGGTGTGATGTTAAAGAGATGGGAGATGAAGAAGGAATCAGGTAA 887
||||| | | ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 816 ACGGTCTGAGAAGTGGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGAAA 875
Query 888 AGGAAGCTGGAGTTACAATTTGATTTGTGGGTGGAACGACATCGTTGAGGCTAACAGATT 947
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 876 AGGAAGCTGGAATTACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATT 935
Query 948 GAAAGAAGGCGACAACATTACTCTTTGGTCGTTTAGGTGCTGTGGAATCCTCTGCTTTGC 1007
||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 936 GAAAGCCGGCGACAACATTAGTCTTTGGTCGTTTAGGTGCTGTGGAGTCCTCTGCTTTGC 995
Query 1008 CATGGAACAGAGTAGCTCTTCCCTTGCTCTCTGTCTCTGCTAA 1050
||||||||||||||||||||| |||||||||||||||||||||
Sbjct 996 CATGGAACAGAGTAGCTCTTCTCTTGCTCTCTGTCTCTGCTAA 1038
> Ahg480001 jgi|Araly1|480001|fgenesh2_kg.3__2702__AT3G24850.1
Length=817
Score = 902 bits (488), Expect = 0.0
Identities = 632/699 (90%), Gaps = 19/699 (3%)
Strand=Plus/Plus
Query 352 GAGACAAAAACATTACAAAACCCTAGTTCAGAACCTTGTTCTTCACTCGGACTCTTTGGT 411
||||| |||||| |||||||||||||||| ||| ||||||||||||||| |||||||| |
Sbjct 136 GAGACGAAAACACTACAAAACCCTAGTTCTGAATCTTGTTCTTCACTCGTACTCTTTGAT 195
Query 412 CACAAGACGGCTGAGTACC-AAAAGACGGAGACGAAAGACCCACCAAACCCTAATTTCCC 470
|||||| |||||||| || | ||||| ||||||||||| | || | |||| |||
Sbjct 196 TACAAGATGGCTGAGT-CCGAGAAGACAGAGACGAAAGA--C-CC--A--CTAA--ACCC 245
Query 471 ATGTACTATGTCTTTGTGCCTAAT-GGAGAACACAAGCCGCAAGAGACGTGCTGTGGAAC 529
| | |||||||| |||| || ||||||||||||||||||||||||||| || ||
Sbjct 246 ---T-C--TGTCTTTGGGCCT-ATCGGAGAACACAAGCCGCAAGAGACGTGCCGTAAAAG 298
Query 530 AAAGGAAGCGTAGTGGTGGAGTCAAGAAAGCAAATGTTGCTCCTTTTTCACAAACGGCGA 589
| |||||||||| ||||||| ||||||||||||| |||||||||||| ||| || ||||
Sbjct 299 AGAGGAAGCGTACTGGTGGATTCAAGAAAGCAAAGGTTGCTCCTTTTCCACGGACAGCGA 358
Query 590 GAGAGACACCTGAGTGGCTTGTCAAGGTGATGACAAACATGAAAGAAGCCAAAGACGCTA 649
||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 359 GAGAGACGCCTGAGTGGCTTGTCAAGGTGATGAGTGACATGAAAGAAGCTAAAGACGCTA 418
Query 650 AATTGATCTTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACAAAGAACCGTCTCT 709
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 419 AACTGATCTTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCT 478
Query 710 CAATGCCTTTCAACAACTTACTCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAATCA 769
||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct 479 CAATGCCTTTCAACAACTTACTCCGCAACGATTTCTTGACGTCTGTGGAGTCCAGAATCA 538
Query 770 TAAACGAAGACATCAACAACAATAACAAGATTGGAGTGGGAGCGATTCTCGTGGATCAAC 829
|| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 539 TAGACAAAGACATCAACAACGATAAGAAGATTGGAGTGGGAGCGATTCTCGTGGATCAAC 598
Query 830 GGTGTAAAAAGTGGGGTGTGATGTTAAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAG 889
||| | | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 599 GGTCTGAGAAGTGGGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAG 658
Query 890 GAAGCTGGAGTTACAATTTGATTTGTGGGTGGAACGACATCGTTGAGGCTAACAGATTGA 949
||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 659 GAAGCTGGAATTACAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTGA 718
Query 950 AAGAAGGCGACAACATTACTCTTTGGTCGTTTAGGTGCTGTGGAATCCTCTGCTTTGCCA 1009
|||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 719 AAGATGGCGACAACATTAGTCTTTGGTCGTTTAGGTGTTGTGGAATCCTCTGCTTTGCCA 778
Query 1010 TGGAACAGAGTAGCTCTTCCCTTGCTCTCTGTCTCTGCT 1048
|||||||||||||||||||||||||||||||||||||||
Sbjct 779 TGGAACAGAGTAGCTCTTCCCTTGCTCTCTGTCTCTGCT 817
Score = 172 bits (93), Expect = 4e-42
Identities = 127/142 (89%), Gaps = 7/142 (5%)
Strand=Plus/Plus
Query 148 gaagaagaattccagaagagaaTCTTTTGTCTCTTCCCGAGAAAAACAAGATCGTCTTTG 207
|||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 GAAGCAGAAAGCCAGAAGAGAATCTTTTGTCTCTTCCCGAGAAAAATAAGATCGTCTTTG 60
Query 208 GTGAAGAGACAACAAAATCTTATTAGGGTTTCTACTTCTTCATCGCTTATCGATCTTAAC 267
||||||||||||||||| |||| | || |||||| ||||||||||||||||||||
Sbjct 61 GTGAAGAGACAACAAAACCTTAAT-GG------ACTTCTACATCGCTTATCGATCTTAAC 113
Query 268 CAGTTCCCTACCGATTCTGAGA 289
||||||||||| ||||||||||
Sbjct 114 CAGTTCCCTACTGATTCTGAGA 135
> Ahg497170 jgi|Araly1|497170|fgenesh2_kg.26__5__AT5G24050.1
Length=897
Score = 616 bits (333), Expect = 1e-175
Identities = 516/597 (86%), Gaps = 42/597 (7%)
Strand=Plus/Plus
Query 237 TTCTACTTCTTCATCGCTTATCGATCTTAACCAGTTCCCTACCGATTCTGAGATCGAAGA 296
||||||||||||||||||||||||| |||||||||||||||| |||||||||| | |||
Sbjct 183 TTCTACTTCTTCATCGCTTATCGATATTAACCAGTTCCCTACTGATTCTGAGA-C--AGA 239
Query 297 CCCACAAAACCATCTTCAAG-GGCTATCCTCTTCATGTTTCATTGCCGCTAATTCCGAGA 355
|||||||||||||| || |||||| |||||||||||||| ||||| |||||||||
Sbjct 240 ---ACAAAACCATCTTC-AGTTGCTATCTTCTTCATGTTTCATCCCCGCTGATTCCGAGA 295
Query 356 CAAAAACATTACAAAACCCTAGTTCAGAACCTTGTTCTTCACTCGGACTCTTTGGTCACA 415
| || | || | ||| || ||||| | || || ||||| | |
Sbjct 296 C--GAA-A--AC---A--CTA---CAAAACCTAG---TT--CT--GACTC--T--T---- 327
Query 416 AGACGGCTGAGTACC-AAAAGACGGAGACGAAAGACCCACCAAACCCTAATTTCCC-ATG 473
| |||||||| || | ||| ||||||||||||||||| ||| ||||| ||||| ||
Sbjct 328 --ATGGCTGAGT-CCGAGGAGAGGGAGACGAAAGACCCACAAAATCCTAA-TTCCCAATC 383
Query 474 TACTATGTCTTTGTGCCTAATGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAAAG 533
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 384 TTCTATGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGCTGTGGAACAGAG 443
Query 534 GAAGCGTAGTGGTGGAGTCAAGAAAGCAAATGTTGCTCCTTTTTCACAAACGGCGAGAGA 593
|||||||| ||||||||||||||||||||| |||||||||| |||| || ||||||||
Sbjct 444 GAAGCGTACTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTCTTCAGGGACAGCGAGAGA 503
Query 594 GACACCTGAGTGGCTTGTCAAGGTGATGACAAACATGAAAGAAGCCAAAGACGCTAAATT 653
||| ||||||||||||||||||||||||| | |||||||||||| |||||||||||| |
Sbjct 504 GACGCCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGTTAAAGACGCTAAACT 563
Query 654 GATCTTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACAAAGAACCGTCTCTCAAT 713
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 564 GATATTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACACAGAACCGTCTCTCAAT 623
Query 714 GCCTTTCAACAACTTACTCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAATCATAAA 773
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 GCCTTTCAACAACTTAATCCGAAACGATTTCCTGACGTCTGTGGAGTCCATAATCATAAA 683
Query 774 CGAAGACATCAACAACAATAACAAGATTGGAGTGGGAGCGATTCTCGTGGATCAACG 830
||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||
Sbjct 684 CGAAGACATCAACAATAATAAGAAGATTGGAGTGGGAGTGATTCTCGTGGATCAACG 740
> Ahg930645 jgi|Araly1|930645|scaffold_303102.1
Length=475
Score = 614 bits (332), Expect = 5e-175
Identities = 408/445 (92%), Gaps = 4/445 (1%)
Strand=Plus/Plus
Query 404 TCTTTGGTCACAAGACGGCTGAGTACC-AAAAGACGGAGACGAAAGACCCACCAAACCCT 462
|||||| | |||||| |||||||| || | ||| ||||||||||||||||| ||| |||
Sbjct 7 TCTTTGATTACAAGATGGCTGAGT-CCGAGGAGAGGGAGACGAAAGACCCACAAAATCCT 65
Query 463 AATTTCCC-ATGTACTATGTCTTTGTGCCTAATGGAGAACACAAGCCGCAAGAGACGTGC 521
|| ||||| || | || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 66 AA-TTCCCAATCTTCTCTGTCTTTGTGCCTAACGGAGAACACAAGCCGCAAGAGACGTGC 124
Query 522 TGTGGAACAAAGGAAGCGTAGTGGTGGAGTCAAGAAAGCAAATGTTGCTCCTTTTTCACA 581
||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 125 TGTGGAACAGAGGAAGCGTAGTGGTGGAGTCAAGAAAGCAAAGGTTGCTCCTTCTTCAGG 184
Query 582 AACGGCGAGAGAGACACCTGAGTGGCTTGTCAAGGTGATGACAAACATGAAAGAAGCCAA 641
|| ||||||||||| ||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 185 GACAGCGAGAGAGACGCCTGAGTGGCTTGTCAAGGTGATGAGAGACATGAAAGAAGTTAA 244
Query 642 AGACGCTAAATTGATCTTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACAAAGAA 701
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 245 AGACGCTAAACTGATATTTGAGAAGACTCTGTTCGTGACTGATGTAAACCCAACACAGAA 304
Query 702 CCGTCTCTCAATGCCTTTCAACAACTTACTCCGAAACGATTTCCTGACGTCTGTGGAGTC 761
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 305 CCGTCTCTCAATGCCTTTCAACAACTTAATCCGAAACGATTTCCTGACGTCTGTGGAGTC 364
Query 762 CATAATCATAAACGAAGACATCAACAACAATAACAAGATTGGAGTGGGAGCGATTCTCGT 821
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 365 CATAATCATAAACGAAGACATCAACAACAATAAGAAGATTGGAGTGGGAGTGATTCTCGT 424
Query 822 GGATCAACGGTGTAAAAAGTGGGGT 846
||||||||||| | | |||||||||
Sbjct 425 GGATCAACGGTCTGAGAAGTGGGGT 449
> Ahg930646 jgi|Araly1|930646|scaffold_303103.1
Length=237
Score = 255 bits (138), Expect = 3e-67
Identities = 197/223 (88%), Gaps = 13/223 (6%)
Strand=Plus/Plus
Query 7 AGTATCTATCACGATGATGACGATCATCTCACGGCTTCAGGTAAAGACCTGTGGTCGAAT 66
||||| ||| ||||||| | | |||||||||||||||||| |||| | |||||||||||
Sbjct 24 AGTATGTATTACGATGA-G--GTTCATCTCACGGCTTCAGGGAAAGGCATGTGGTCGAAT 80
Query 67 TTCTGTGTACTGGTTGATGCGGCGGTTATGTTATATgaagaagaagaagaagaacaacgt 126
|| ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 81 TTATGTGTACTGGTTGATGCGG-GGTTATGTTATAT---------GAAGAAGAACAACGT 130
Query 127 cgtaagattgtctctgaagaagaagaagaattccagaagagaaTCTTTTGTCTCTTCCCG 186
|||| || ||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 131 CGTACGACTGTCTCTGAAGAAGAAGCAGAAAGCCAGAAGAGAATCTTTTGTCTCTTCCCG 190
Query 187 AGAAAAACAAGATCGTCTTTGGTGAAGAGACAACAAAATCTTA 229
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct 191 AGAAAAACAAGATCGTCTTTGGTGAAGAGACAACAAAAGCTTA 233
> Ahg930632 jgi|Araly1|930632|scaffold_303089.1
Length=420
Score = 182 bits (98), Expect = 6e-45
Identities = 126/140 (90%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 288 GATCGAAGACCCACAAAACCATCTTCAAGGGCTATCCTCTTCATGTTTCATTGCCGCTAA 347
|||||||||||||||||||||||||||| ||||| | |||||||||||||| |||||| |
Sbjct 244 GATCGAAGACCCACAAAACCATCTTCAACGGCTAACTTCTTCATGTTTCATCGCCGCTGA 303
Query 348 TTCCGAGACAAAAACATTACAAAACCCTAGTTCAGAACCTTGTTCTTCACTCGGACTCTT 407
|||| |||| |||||| |||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 304 TTCCAAGACGAAAACACTACAAAACCCTAGTTCTGAACTTTGTTCTTCACTCGTACTCTT 363
Query 408 TGGTCACAAGACGGCTGAGT 427
|| | |||||| ||||||||
Sbjct 364 TGATTACAAGATGGCTGAGT 383
> Ahg887802 jgi|Araly1|887802|Al_scaffold_0123_3
Length=351
Score = 86.1 bits (46), Expect = 5e-16
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 288 GATCGAAGACCCACAAAACCATCTTCAAGGGCTATCCTCTTCATGTTTCATTGCCGCT 345
|||||||||||||||||||||||||||| ||||| | |||||||||||||| ||||||
Sbjct 292 GATCGAAGACCCACAAAACCATCTTCAACGGCTAACTTCTTCATGTTTCATCGCCGCT 349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5