BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24060.2
Length=1811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894293 jgi|Araly1|894293|Al_scaffold_0006_2289 2013 0.0
Ahg485272 jgi|Araly1|485272|fgenesh2_kg.5__1264__AT3G49140.1 475 4e-133
Ahg348010 jgi|Araly1|348010|fgenesh1_pg.C_scaffold_5001402 370 2e-101
Ahg897766 jgi|Araly1|897766|Al_scaffold_0005_1732 86.1 8e-16
> Ahg894293 jgi|Araly1|894293|Al_scaffold_0006_2289
Length=1398
Score = 2013 bits (1090), Expect = 0.0
Identities = 1268/1350 (94%), Gaps = 27/1350 (2%)
Strand=Plus/Plus
Query 172 GGTGTGGATTTCTTAAGTGTTA-TAGTGACTATATTACAAGAAAATACCTGCGGAGGAAT 230
||||||||||||| ||||| || ||||||||| ||||||||||| ||||||||||||||
Sbjct 50 GGTGTGGATTTCTCAAGTG-TAGCAGTGACTATCTTACAAGAAAACACCTGCGGAGGAAT 108
Query 231 AGGACTCAAGCTATAGCAGAGTATTTGGGTTCAGCTTCAGATCCTAAGAAGCCAACTGGG 290
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 109 AGGACTCAAGCCATAGCAGAGTATTTAGGTTCAGCTTCAGATCCTAAGAAGCCAACTGGG 168
Query 291 AAGTCAAGTTATCATCCTTCAGAAGATATCAGAGCATATGTGCCAGAGAAGAATCCTGGA 350
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 169 AAGTCAAGTTATCATCCTTCCGAAGAAATCAGAGCTTATGTGCCAGAGAAGAATCCTGGA 228
Query 351 GATTCTAGGCTTTCACCTCCTGAAACTGCTAGAACCATCATTGAGGTGAACAAAAAAGGA 410
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 229 GATTCTAGGCTTTCACCTCCAGAAACTGCTAGAACCATCATTGAGGTGAACAAAAAAGGA 288
Query 411 ACCCTGATGCTCTCAGGTTTACTTGGTATTGGAGTTCATGAGAATATTCTCTGGCCGGAT 470
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 289 ACCCTGATGCTTTCAGGTTTACTTGGTATTGGAGTTCATGAGAATATTCTCTGGCCCGAT 348
Query 471 ATACCTTATGTCACAGATCAGCATGGAAATATATATTTTCAAGTAAAGGAAAATGAGGAC 530
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 ATACCTTATGTAACAGATCAGCATGGAAATATATATTTTCAAGTAAAGGAAAATGAGGAT 408
Query 531 ATAATGCAGACTGTTGTTACATCTGATAATAATTATGTGCAAGTAATAGTAGGTTTTGAT 590
|||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct 409 ATAATGCAGACTGTTGTTGCTTCTGATAATAATTATGTGCAAGTGATAGTAGGTTTTGAT 468
Query 591 ACGATGGAGATGATCAAGGACATGGAGCTGAGCAGTCCATCTGGTATTGGTTTTGGGATT 650
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 469 ACGATGGAGATGATCAAGGACATGGAGCTGAGCAGTCCATCTGGTATTGGTTTCGGGATT 528
Query 651 GAAGAAATCGAAGATGGTGAAAGTGAAGTTGAGGATGAAAACAAGGGCGATGAGGATGAA 710
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 529 GAAGAAATCGAAGATGGTGAAAGTGAAGTCGAGGATGAAAACAAGGGGGATGAGGATGAA 588
Query 711 GGAGAAGACAAAGATGACGAGGAATGGGTTGCTGTTCTAGAAGATGGAGATGACGAGGAT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GGAGAAGACAAAGATGACGAGGAATGGGTTGCTGTTCTAGAAGATGGAGATGACGAGGAT 648
Query 771 AACTATGTCTCAGACTCTGATGAATCACTTGGAGACTGGGCAAACTTGGAAACGATGCGA 830
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AGTTATGTATCAGAGTCTGATGAATCACTTGGAGACTGGGCAAACTTGGAAACGATGCGG 708
Query 831 TATTGCCATCCTATGTATTTTGCCAGGAGGATGGCCGAGGTTGCTTCAACTGATCCTGTA 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TATTGCCATCCTATGTATTTTGCCAGGAGGATGGCCGAGGTTGCTTCAACTGATCCTGTA 768
Query 891 AATTGGATGGATCAGCCGTCCGCTGGCCTTGCTATCCAAGGGCTCTTGAGTCCTGTCATT 950
||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| ||
Sbjct 769 AATTGGATGGAGCAGCCGTCCGCTGGCCTTGCTATCCAGGGGCTCTTGAGTCGTGTTGTT 828
Query 951 GTGGAAGATCACTCAGATATCCAAAAACATATCTCTGGTTGTATATCTACAGGCACTGAC 1010
|||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 829 GTGGAAGATCACTCGGATATCCAAAAACATATCTCTGGTTGCAAATCTACAGGCACTGAC 888
Query 1011 AAAAACAAGGAGAGAGAAAACTCAGAAGAGATATTTGAAGGCATTGGTGAGAATGAATCT 1070
| |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 889 AGAAACAAGGAGGGAGGAAACTCAGAAGAGAAATTTGAAGGCATTGGTGAGAATGAATCT 948
Query 1071 GAGATATTGCATG-TTGAAAATTCGAGAAATGCTATA-CAGTACTACAAGCTGGAGATAA 1128
||||||||||| | ||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 949 GAGATATTGCA-GCTTGAAAATTCGAGAAATGCCATATC-GTACTACAAGCTGGAGATAA 1006
Query 1129 TAAGAATCCAGCTCATCACGGCACAGGG------G-CA---T-C--A-G----ACTGAAG 1170
|||||||||||||||||||||||||||| | || | | | | |||||||
Sbjct 1007 TAAGAATCCAGCTCATCACGGCACAGGGACATCAGGCAAGATTCTCACGCCTTACTGAAG 1066
Query 1171 TGGAAGTGGAAGACGTCAGGAAAGCACAACCTGATGTTATTGCTTGTGCATCAGATGGTA 1230
|| ||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||
Sbjct 1067 TGAAAGTGGAAGACGTCAGGAAAGTACAACCTGATGCTATTGCTCGTGCATCAGATGGTA 1126
Query 1231 TAC-TGACTCGTCTAGAAGAAGATGGCGATAAACTAACTGAAGCTCTCAGATCTCTGTGT 1289
| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1127 T-CGTGACTCGTCTAGAAGAAGATGGCGATAAACTAACTGAAGCTCTCAAATCTCTGTGC 1185
Query 1290 TGGAGAAATAATGGGATTCAAGCAGAGGAAGTGAAGCTCATTGGGATAGATTCACTTGGT 1349
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1186 TGGAGACATAATGGGATTCAAGCAGAGGAAGTGAAGCTCATAGGGATAGATTCACTTGGT 1245
Query 1350 TTCGACCTTAGGATTTGCTCAGGAATGCAAATTGAGACATTACGGTTTGCATTCTCGATA 1409
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TTCGACCTCAGGATTTGCTCAGGAATGCAAATTGAGACATTACGGTTTGCATTCTCGATA 1305
Query 1410 AGGGCAACATCAGAACACAACGCTGAGGGACAGTTGAGAGAATTATTATTCGCTTCTACA 1469
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1306 AGGGCAACATCAGTTCACAACGCTGAGGGACAGTTGAGAGAATTATTATTCGTTTCGACA 1365
Query 1470 CCTTCCAAGCCGC-AGAAACCAAAACAAAC 1498
|| |||| || | ||||||||||||||||
Sbjct 1366 CCACCCAAACCACTAGAAACCAAAACAAAC 1395
> Ahg485272 jgi|Araly1|485272|fgenesh2_kg.5__1264__AT3G49140.1
Length=3784
Score = 475 bits (257), Expect = 4e-133
Identities = 733/949 (77%), Gaps = 87/949 (9%)
Strand=Plus/Plus
Query 569 GCAAGTAATAGTAGGTTTTGATACGATGGAGATGATCAAGGACATGGAGCTGA-GCAGTC 627
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 2697 GCAAGTTATAGTTGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGG-GTC 2755
Query 628 CATCTGGTATTGGTTTTGGGATTGAAGAA-ATCGAA-GATGGTGAA-AGTGA-AGTTGAG 683
|||| || || |||| | |||||| || ||| | ||| || | ||| ||| |||
Sbjct 2756 TTTCTGATAGTGACTTTGAAACTGAAGATGAT-GAAAG-TGGAGAGGA-TGACAGT-GAG 2811
Query 684 GATGAAA--ACAAGG-GC-GATGAGGATGAA-GGA--GAAGA-CAA-AG-ATGACGAGGA 733
||| | | | ||| | |||||||| ||| || | | | | || |||| || ||
Sbjct 2812 GAT-ACAGGAGAAGACGAAGATGAGGAGGAATGGGTTGCTGTTCTAGAGGATGAAGATGA 2870
Query 734 ATG--G--GTTGCTGTTCTAGAA-GATGGA-GATGACGAGGATAACT-ATG-TCTCAGAC 785
| | | | || || | || | |||| | ||||| || ||| | | ||| | || ||
Sbjct 2871 A-GACGACGATGATGATG-AGGATGATG-ATGATGATGATGATGA-TGATGAT-TCTGAT 2925
Query 786 TCTGATGAATCACTTGGAGACTGGGCAAACTTGGAAACGATGCG-ATATTGCCATCCTAT 844
|| |||||||| || |||||||||||||| |||||||| ||| | | ||||||||| ||
Sbjct 2926 TCCGATGAATCGCTGGGAGACTGGGCAAATTTGGAAACAATGAGGAG-TTGCCATCCCAT 2984
Query 845 GTATTTTGCCAGGAGGATGGCCGAGGTTGCTTCAACTGATCCTGTAAATTGGATGGATCA 904
|| |||||| | ||| ||| | ||||||||||||| ||||||||| |||||||||||||
Sbjct 2985 GTTTTTTGCAAAGAGAATGACTGAGGTTGCTTCAAATGATCCTGTTGATTGGATGGATCA 3044
Query 905 GCCGTCCGCTGGCCTTGCTATCCAAGGG-CT-CTTGAGTCCTGTCATT-GTGGAAGATCA 961
|||||| ||||||||||||||||| ||| || || ||||| | || || ||||||||| |
Sbjct 3045 GCCGTCTGCTGGCCTTGCTATCCA-GGGACTTCT-GAGTCATATC-TTAGTGGAAGATTA 3101
Query 962 CTCAGATATCCAAAA-ACA-TATCTCTGGTTGTATAT-CTACAGGCACTGA-CAAAAACA 1017
|||||||||||||| | | | | ||| | ||| || ||||| ||| || || |||||
Sbjct 3102 TTCAGATATCCAAAAGAAACT-TG-CTGATAGTA-ATTCTACAACCAC-GAACAGAAACA 3157
Query 1018 AGGA-GAGAGAAAACTCAGAAGAGATAT-TTGAAGGCATT-G---G--TGA-G---AATG 1065
|||| | |||||||| |||||| | | ||| || |||| | | || | || |
Sbjct 3158 AGGATGC-AGAAAACTTAGAAGAAA-AGCTTGCAGACATTAGTAAGGCTGGTGCTGAA-G 3214
Query 1066 AATCTGAGATA--TT-G-C--ATGTTGAAAATTCGAGAAATGCTA-TA-CAGTACTACAA 1117
||||||| ||| || | | | | |||||| |||| || | | || | |||||
Sbjct 3215 AATCTGACATAGATTCGTCGCAGGGTGAAAAAGAAAGAACTG-TGGTGGCATTT-TACAA 3272
Query 1118 GCTGGAGATAATAAGAATCCAGCTCATCACGGCACA-GGGGCATCAGACTGAAGTGGAAG 1176
||||||||| |||||||| ||||| || || ||||| |||| ||||||||||||| || |
Sbjct 3273 GCTGGAGATGATAAGAATTCAGCTTATTACAGCACAAGGGG-ATCAGACTGAAGTTGAGG 3331
Query 1177 TGGAAGACGTCAGGAAAGCACAACCTGATGTTATTGCTTGTGCATCAGATGGTAT-ACTG 1235
||||||| ||||| |||||||||||||||| ||||||| |||||||| | || | |
Sbjct 3332 TGGAAGATGTCAGAAAAGCACAACCTGATGCTATTGCTCATGCATCAGCTCAAATCA-TA 3390
Query 1236 A-CTCGTCTAGAAGAAGATGGCGATAAACTAACTGAAGCTCTCAGATCTCTGTGTTGGAG 1294
| | ||| |||||||| ||| ||||||||||||||||| |||| |||||||||||||||
Sbjct 3391 AGC-CGTTTAGAAGAATCTGGTGATAAACTAACTGAAGCCCTCAAATCTCTGTGTTGGAG 3449
Query 1295 AAATAATGGGATTCAAGCAGAGGAAGTGAAGCTCATTGGGATAGATTCACTTGGTTTCGA 1354
| |||| || |||| |||||||||||||||||| |||||||||||||| || ||||| ||
Sbjct 3450 ACATAACGGTATTCTAGCAGAGGAAGTGAAGCTGATTGGGATAGATTCCCTAGGTTTTGA 3509
Query 1355 CCTTAGGATTTGCTCAGGAATGCAAA--TTGAGACATTACGGTTTGCATTCTCGATAAGG 1412
||| ||| ||||| ||||| ||||| ||||| |||| |||||||||||||||| ||||
Sbjct 3510 CCTCAGGCTTTGCGCAGGA--GCAAAGATTGAGTCATTGCGGTTTGCATTCTCGACAAGG 3567
Query 1413 GCAACATCAGAACACAACGCTGAGGGACAG-TTGAGAGAATTATTATTC 1460
|||||||||||| | || || |||||||| || |||||| ||||||||
Sbjct 3568 GCAACATCAGAAGAAAATGCAGAGGGACAAATT-AGAGAACTATTATTC 3615
> Ahg348010 jgi|Araly1|348010|fgenesh1_pg.C_scaffold_5001402
Length=1044
Score = 370 bits (200), Expect = 2e-101
Identities = 710/935 (76%), Gaps = 119/935 (13%)
Strand=Plus/Plus
Query 569 GCAAGTAATAGTAGGTTTTGATACGATGGAGATGATCAAGGACATGGAGCTGA-GCAGTC 627
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 180 GCAAGTTATAGTAGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGG-GTC 238
Query 628 CATCTGGTATTGGTTTTGGGATTGAAGAAATCGAAGATGGTGAAAGTGAAGTTGAGGATG 687
|||| || || |||| | || | ||||||| |||||||| || || |||
Sbjct 239 TTTCTGATAGTGACTTTG--A---AAC---T-GAAGATGATGAAAGTGGAGA--AG-ATG 286
Query 688 AAAACAAGGGCGATGAGGATGA-AGGAGAAGACAAAGATGACGAGGAATGGGTTGCTGTT 746
| || | ||||||| | |||||||||| || |||| ||||||||||||||||||
Sbjct 287 A---CA-G-----TGAGGAT-ACAGGAGAAGACGAATATGAGGAGGAATGGGTTGCTGTT 336
Query 747 CTAGAAGATGGAGATGACGAGGATAACTATGTCTCAGACTCTGATGAATCACTTGG-AGA 805
||||| |||| | ||| || | | | | |||||||| || || |||
Sbjct 337 CTAGAGGATG-A--TGATGA---T------G----A---T--GATGAATCGCT-GGCAGA 374
Query 806 CTGGGCAAACTTGGAAACGATGCG-ATATTGCCATCCTATGTATTTTGCC--AG-GAGGA 861
||||||||| |||||||| ||| | | ||||||||| |||| |||| | ||| |
Sbjct 375 CTGGGCAAATTTGGAAACAATGAGGAG-TTGCCATCCCATGTTTTTTTTTTTAAAGAGAA 433
Query 862 TGGCCGAGGTTGCTTCA-ACTGATCCTGTAAATTGGATGGATCAGCCGTCCGCTGGCCTT 920
|| | |||||||||||| | ||||| ||| ||||||||||||||||||| |||||||||
Sbjct 434 TGACTGAGGTTGCTTCAGA-TGATCTTGTTGATTGGATGGATCAGCCGTCTGCTGGCCTT 492
Query 921 GCTATCCAAGGGC-T-CTTGAGTCCTGTCATT-GTGGAAGATCACTCAGATATCCAAAA- 976
|||||||| ||| | || ||||| | || || ||||||||| | |||||||||||||
Sbjct 493 GCTATCCA-GGGAATTCT-GAGTCATATC-TTAGTGGAAGATTATTCAGATATCCAAAGG 549
Query 977 ACATATCTCTGGTTG-TAT-A-T-CTACAGGCACTGA-CAAAAACAAGGA-GAGAGAAAA 1030
| | | || || | | || | | ||||| | || || || ||||||||| | ||||||
Sbjct 550 A-A-A-CT-TGCT-GATAACAATTCTACAAGTAC-GAACAGAAACAAGGATGC-AGAAAA 602
Query 1031 CTCAGAAGAGA---T---AT---TT-G-AAGGCAT-TGGTGAGAATGAATCTGAGATA-- 1076
|| |||||| | | | || | ||||||| |||||| | |||||||| |||
Sbjct 603 CTTAGAAGAAAAGCTTGCAGACATTAGTAAGGCATGTGGTGA-A--GAATCTGACATAGA 659
Query 1077 TT----GCATGTTGAAAATTCGAGAAATGCTA-TA-CAGTACTACAAGCTGGAGATAATA 1130
|| ||| | |||||| |||| || | | || | |||||||||||||| |||
Sbjct 660 TTCATCGCAGGGTGAAAAAGAAAGAACTG-TGGTGGCATTT-TACAAGCTGGAGATGATA 717
Query 1131 AGAATCCAGCTCATCACGGCACAGGGGCATCAGACTGAAGTGGAAGTGGAAGACGTCAGG 1190
||||| ||||| || || | || || || ||| ||| || |||||||| |||||
Sbjct 718 AGAATTCAGCTTATTACA-C-CA----CA--AG-CTGGAGTTGAGGTGGAAGATGTCAGA 768
Query 1191 AAAGCACAACCTGATGTTATTGCTTGTGCATCAGATGGTAT-ACTGA-CTCGTCTAGAAG 1248
|||||||||||||||||||||||| |||||||| ||| || | | | | ||| ||||||
Sbjct 769 AAAGCACAACCTGATGTTATTGCTCATGCATCAGCTGGAATCA-TAAGC-CGTTTAGAAG 826
Query 1249 AAGATGGCGATAAACTAACTGAAGCTCTCAGATCTCTGTGTTGGAGAAATAATGGGATTC 1308
|| ||| |||||| |||||||||| |||| |||||||||||||||| ||||||| ||||
Sbjct 827 AATCTGGTGATAAAGTAACTGAAGCCCTCAAATCTCTGTGTTGGAGACATAATGGTATTC 886
Query 1309 AAGCAGAGGAAGTGAAGCTCATTGGGATAGATTCACTTGGTTTCGACCTTAGGATTTGCT 1368
||||||||||||||||||| |||||| ||||||| || ||||| ||||| ||| |||||
Sbjct 887 AAGCAGAGGAAGTGAAGCTGATTGGGGTAGATTCCCTAGGTTTTGACCTCAGGCTTTGCG 946
Query 1369 CAGGAATGCAAA--TTGAGACATTACGGTTTGCATTCTCGATAAGGGCAACATCAGAACA 1426
||||| ||||| ||||| |||| ||||||||||||| || |||||||||||||||| |
Sbjct 947 CAGGA--GCAAAAATTGAGTCATTTCGGTTTGCATTCTTGACAAGGGCAACATCAGAAGA 1004
Query 1427 CAACGCTGAGGGAC-AGTTGAGAGAATTATTATTC 1460
||| || ||||||| | | ||||| ||||||||
Sbjct 1005 CAATGCAGAGGGACGAATA-AGAGAGCTATTATTC 1038
> Ahg897766 jgi|Araly1|897766|Al_scaffold_0005_1732
Length=2361
Score = 86.1 bits (46), Expect = 8e-16
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 570 CAAGTAATAGTAGGTTTTGATACGATGGAGATGATCAAGGACATGGAGCTGA 621
||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1621 CAAGTTATAGTAGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGA 1672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67991087325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5