BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24060.2 Length=1811 Score E Sequences producing significant alignments: (Bits) Value Ahg894293 jgi|Araly1|894293|Al_scaffold_0006_2289 2013 0.0 Ahg485272 jgi|Araly1|485272|fgenesh2_kg.5__1264__AT3G49140.1 475 4e-133 Ahg348010 jgi|Araly1|348010|fgenesh1_pg.C_scaffold_5001402 370 2e-101 Ahg897766 jgi|Araly1|897766|Al_scaffold_0005_1732 86.1 8e-16 > Ahg894293 jgi|Araly1|894293|Al_scaffold_0006_2289 Length=1398 Score = 2013 bits (1090), Expect = 0.0 Identities = 1268/1350 (94%), Gaps = 27/1350 (2%) Strand=Plus/Plus Query 172 GGTGTGGATTTCTTAAGTGTTA-TAGTGACTATATTACAAGAAAATACCTGCGGAGGAAT 230 ||||||||||||| ||||| || ||||||||| ||||||||||| |||||||||||||| Sbjct 50 GGTGTGGATTTCTCAAGTG-TAGCAGTGACTATCTTACAAGAAAACACCTGCGGAGGAAT 108 Query 231 AGGACTCAAGCTATAGCAGAGTATTTGGGTTCAGCTTCAGATCCTAAGAAGCCAACTGGG 290 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 109 AGGACTCAAGCCATAGCAGAGTATTTAGGTTCAGCTTCAGATCCTAAGAAGCCAACTGGG 168 Query 291 AAGTCAAGTTATCATCCTTCAGAAGATATCAGAGCATATGTGCCAGAGAAGAATCCTGGA 350 |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| Sbjct 169 AAGTCAAGTTATCATCCTTCCGAAGAAATCAGAGCTTATGTGCCAGAGAAGAATCCTGGA 228 Query 351 GATTCTAGGCTTTCACCTCCTGAAACTGCTAGAACCATCATTGAGGTGAACAAAAAAGGA 410 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 229 GATTCTAGGCTTTCACCTCCAGAAACTGCTAGAACCATCATTGAGGTGAACAAAAAAGGA 288 Query 411 ACCCTGATGCTCTCAGGTTTACTTGGTATTGGAGTTCATGAGAATATTCTCTGGCCGGAT 470 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 289 ACCCTGATGCTTTCAGGTTTACTTGGTATTGGAGTTCATGAGAATATTCTCTGGCCCGAT 348 Query 471 ATACCTTATGTCACAGATCAGCATGGAAATATATATTTTCAAGTAAAGGAAAATGAGGAC 530 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 ATACCTTATGTAACAGATCAGCATGGAAATATATATTTTCAAGTAAAGGAAAATGAGGAT 408 Query 531 ATAATGCAGACTGTTGTTACATCTGATAATAATTATGTGCAAGTAATAGTAGGTTTTGAT 590 |||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| Sbjct 409 ATAATGCAGACTGTTGTTGCTTCTGATAATAATTATGTGCAAGTGATAGTAGGTTTTGAT 468 Query 591 ACGATGGAGATGATCAAGGACATGGAGCTGAGCAGTCCATCTGGTATTGGTTTTGGGATT 650 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 469 ACGATGGAGATGATCAAGGACATGGAGCTGAGCAGTCCATCTGGTATTGGTTTCGGGATT 528 Query 651 GAAGAAATCGAAGATGGTGAAAGTGAAGTTGAGGATGAAAACAAGGGCGATGAGGATGAA 710 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 529 GAAGAAATCGAAGATGGTGAAAGTGAAGTCGAGGATGAAAACAAGGGGGATGAGGATGAA 588 Query 711 GGAGAAGACAAAGATGACGAGGAATGGGTTGCTGTTCTAGAAGATGGAGATGACGAGGAT 770 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 589 GGAGAAGACAAAGATGACGAGGAATGGGTTGCTGTTCTAGAAGATGGAGATGACGAGGAT 648 Query 771 AACTATGTCTCAGACTCTGATGAATCACTTGGAGACTGGGCAAACTTGGAAACGATGCGA 830 | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 649 AGTTATGTATCAGAGTCTGATGAATCACTTGGAGACTGGGCAAACTTGGAAACGATGCGG 708 Query 831 TATTGCCATCCTATGTATTTTGCCAGGAGGATGGCCGAGGTTGCTTCAACTGATCCTGTA 890 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 709 TATTGCCATCCTATGTATTTTGCCAGGAGGATGGCCGAGGTTGCTTCAACTGATCCTGTA 768 Query 891 AATTGGATGGATCAGCCGTCCGCTGGCCTTGCTATCCAAGGGCTCTTGAGTCCTGTCATT 950 ||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| || Sbjct 769 AATTGGATGGAGCAGCCGTCCGCTGGCCTTGCTATCCAGGGGCTCTTGAGTCGTGTTGTT 828 Query 951 GTGGAAGATCACTCAGATATCCAAAAACATATCTCTGGTTGTATATCTACAGGCACTGAC 1010 |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| Sbjct 829 GTGGAAGATCACTCGGATATCCAAAAACATATCTCTGGTTGCAAATCTACAGGCACTGAC 888 Query 1011 AAAAACAAGGAGAGAGAAAACTCAGAAGAGATATTTGAAGGCATTGGTGAGAATGAATCT 1070 | |||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 889 AGAAACAAGGAGGGAGGAAACTCAGAAGAGAAATTTGAAGGCATTGGTGAGAATGAATCT 948 Query 1071 GAGATATTGCATG-TTGAAAATTCGAGAAATGCTATA-CAGTACTACAAGCTGGAGATAA 1128 ||||||||||| | ||||||||||||||||||| ||| | |||||||||||||||||||| Sbjct 949 GAGATATTGCA-GCTTGAAAATTCGAGAAATGCCATATC-GTACTACAAGCTGGAGATAA 1006 Query 1129 TAAGAATCCAGCTCATCACGGCACAGGG------G-CA---T-C--A-G----ACTGAAG 1170 |||||||||||||||||||||||||||| | || | | | | ||||||| Sbjct 1007 TAAGAATCCAGCTCATCACGGCACAGGGACATCAGGCAAGATTCTCACGCCTTACTGAAG 1066 Query 1171 TGGAAGTGGAAGACGTCAGGAAAGCACAACCTGATGTTATTGCTTGTGCATCAGATGGTA 1230 || ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| Sbjct 1067 TGAAAGTGGAAGACGTCAGGAAAGTACAACCTGATGCTATTGCTCGTGCATCAGATGGTA 1126 Query 1231 TAC-TGACTCGTCTAGAAGAAGATGGCGATAAACTAACTGAAGCTCTCAGATCTCTGTGT 1289 | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1127 T-CGTGACTCGTCTAGAAGAAGATGGCGATAAACTAACTGAAGCTCTCAAATCTCTGTGC 1185 Query 1290 TGGAGAAATAATGGGATTCAAGCAGAGGAAGTGAAGCTCATTGGGATAGATTCACTTGGT 1349 |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1186 TGGAGACATAATGGGATTCAAGCAGAGGAAGTGAAGCTCATAGGGATAGATTCACTTGGT 1245 Query 1350 TTCGACCTTAGGATTTGCTCAGGAATGCAAATTGAGACATTACGGTTTGCATTCTCGATA 1409 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1246 TTCGACCTCAGGATTTGCTCAGGAATGCAAATTGAGACATTACGGTTTGCATTCTCGATA 1305 Query 1410 AGGGCAACATCAGAACACAACGCTGAGGGACAGTTGAGAGAATTATTATTCGCTTCTACA 1469 ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 1306 AGGGCAACATCAGTTCACAACGCTGAGGGACAGTTGAGAGAATTATTATTCGTTTCGACA 1365 Query 1470 CCTTCCAAGCCGC-AGAAACCAAAACAAAC 1498 || |||| || | |||||||||||||||| Sbjct 1366 CCACCCAAACCACTAGAAACCAAAACAAAC 1395 > Ahg485272 jgi|Araly1|485272|fgenesh2_kg.5__1264__AT3G49140.1 Length=3784 Score = 475 bits (257), Expect = 4e-133 Identities = 733/949 (77%), Gaps = 87/949 (9%) Strand=Plus/Plus Query 569 GCAAGTAATAGTAGGTTTTGATACGATGGAGATGATCAAGGACATGGAGCTGA-GCAGTC 627 |||||| ||||| ||||||||||||||||||||||||||||| |||||||||| | ||| Sbjct 2697 GCAAGTTATAGTTGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGG-GTC 2755 Query 628 CATCTGGTATTGGTTTTGGGATTGAAGAA-ATCGAA-GATGGTGAA-AGTGA-AGTTGAG 683 |||| || || |||| | |||||| || ||| | ||| || | ||| ||| ||| Sbjct 2756 TTTCTGATAGTGACTTTGAAACTGAAGATGAT-GAAAG-TGGAGAGGA-TGACAGT-GAG 2811 Query 684 GATGAAA--ACAAGG-GC-GATGAGGATGAA-GGA--GAAGA-CAA-AG-ATGACGAGGA 733 ||| | | | ||| | |||||||| ||| || | | | | || |||| || || Sbjct 2812 GAT-ACAGGAGAAGACGAAGATGAGGAGGAATGGGTTGCTGTTCTAGAGGATGAAGATGA 2870 Query 734 ATG--G--GTTGCTGTTCTAGAA-GATGGA-GATGACGAGGATAACT-ATG-TCTCAGAC 785 | | | | || || | || | |||| | ||||| || ||| | | ||| | || || Sbjct 2871 A-GACGACGATGATGATG-AGGATGATG-ATGATGATGATGATGA-TGATGAT-TCTGAT 2925 Query 786 TCTGATGAATCACTTGGAGACTGGGCAAACTTGGAAACGATGCG-ATATTGCCATCCTAT 844 || |||||||| || |||||||||||||| |||||||| ||| | | ||||||||| || Sbjct 2926 TCCGATGAATCGCTGGGAGACTGGGCAAATTTGGAAACAATGAGGAG-TTGCCATCCCAT 2984 Query 845 GTATTTTGCCAGGAGGATGGCCGAGGTTGCTTCAACTGATCCTGTAAATTGGATGGATCA 904 || |||||| | ||| ||| | ||||||||||||| ||||||||| ||||||||||||| Sbjct 2985 GTTTTTTGCAAAGAGAATGACTGAGGTTGCTTCAAATGATCCTGTTGATTGGATGGATCA 3044 Query 905 GCCGTCCGCTGGCCTTGCTATCCAAGGG-CT-CTTGAGTCCTGTCATT-GTGGAAGATCA 961 |||||| ||||||||||||||||| ||| || || ||||| | || || ||||||||| | Sbjct 3045 GCCGTCTGCTGGCCTTGCTATCCA-GGGACTTCT-GAGTCATATC-TTAGTGGAAGATTA 3101 Query 962 CTCAGATATCCAAAA-ACA-TATCTCTGGTTGTATAT-CTACAGGCACTGA-CAAAAACA 1017 |||||||||||||| | | | | ||| | ||| || ||||| ||| || || ||||| Sbjct 3102 TTCAGATATCCAAAAGAAACT-TG-CTGATAGTA-ATTCTACAACCAC-GAACAGAAACA 3157 Query 1018 AGGA-GAGAGAAAACTCAGAAGAGATAT-TTGAAGGCATT-G---G--TGA-G---AATG 1065 |||| | |||||||| |||||| | | ||| || |||| | | || | || | Sbjct 3158 AGGATGC-AGAAAACTTAGAAGAAA-AGCTTGCAGACATTAGTAAGGCTGGTGCTGAA-G 3214 Query 1066 AATCTGAGATA--TT-G-C--ATGTTGAAAATTCGAGAAATGCTA-TA-CAGTACTACAA 1117 ||||||| ||| || | | | | |||||| |||| || | | || | ||||| Sbjct 3215 AATCTGACATAGATTCGTCGCAGGGTGAAAAAGAAAGAACTG-TGGTGGCATTT-TACAA 3272 Query 1118 GCTGGAGATAATAAGAATCCAGCTCATCACGGCACA-GGGGCATCAGACTGAAGTGGAAG 1176 ||||||||| |||||||| ||||| || || ||||| |||| ||||||||||||| || | Sbjct 3273 GCTGGAGATGATAAGAATTCAGCTTATTACAGCACAAGGGG-ATCAGACTGAAGTTGAGG 3331 Query 1177 TGGAAGACGTCAGGAAAGCACAACCTGATGTTATTGCTTGTGCATCAGATGGTAT-ACTG 1235 ||||||| ||||| |||||||||||||||| ||||||| |||||||| | || | | Sbjct 3332 TGGAAGATGTCAGAAAAGCACAACCTGATGCTATTGCTCATGCATCAGCTCAAATCA-TA 3390 Query 1236 A-CTCGTCTAGAAGAAGATGGCGATAAACTAACTGAAGCTCTCAGATCTCTGTGTTGGAG 1294 | | ||| |||||||| ||| ||||||||||||||||| |||| ||||||||||||||| Sbjct 3391 AGC-CGTTTAGAAGAATCTGGTGATAAACTAACTGAAGCCCTCAAATCTCTGTGTTGGAG 3449 Query 1295 AAATAATGGGATTCAAGCAGAGGAAGTGAAGCTCATTGGGATAGATTCACTTGGTTTCGA 1354 | |||| || |||| |||||||||||||||||| |||||||||||||| || ||||| || Sbjct 3450 ACATAACGGTATTCTAGCAGAGGAAGTGAAGCTGATTGGGATAGATTCCCTAGGTTTTGA 3509 Query 1355 CCTTAGGATTTGCTCAGGAATGCAAA--TTGAGACATTACGGTTTGCATTCTCGATAAGG 1412 ||| ||| ||||| ||||| ||||| ||||| |||| |||||||||||||||| |||| Sbjct 3510 CCTCAGGCTTTGCGCAGGA--GCAAAGATTGAGTCATTGCGGTTTGCATTCTCGACAAGG 3567 Query 1413 GCAACATCAGAACACAACGCTGAGGGACAG-TTGAGAGAATTATTATTC 1460 |||||||||||| | || || |||||||| || |||||| |||||||| Sbjct 3568 GCAACATCAGAAGAAAATGCAGAGGGACAAATT-AGAGAACTATTATTC 3615 > Ahg348010 jgi|Araly1|348010|fgenesh1_pg.C_scaffold_5001402 Length=1044 Score = 370 bits (200), Expect = 2e-101 Identities = 710/935 (76%), Gaps = 119/935 (13%) Strand=Plus/Plus Query 569 GCAAGTAATAGTAGGTTTTGATACGATGGAGATGATCAAGGACATGGAGCTGA-GCAGTC 627 |||||| ||||||||||||||||||||||||||||||||||| |||||||||| | ||| Sbjct 180 GCAAGTTATAGTAGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGG-GTC 238 Query 628 CATCTGGTATTGGTTTTGGGATTGAAGAAATCGAAGATGGTGAAAGTGAAGTTGAGGATG 687 |||| || || |||| | || | ||||||| |||||||| || || ||| Sbjct 239 TTTCTGATAGTGACTTTG--A---AAC---T-GAAGATGATGAAAGTGGAGA--AG-ATG 286 Query 688 AAAACAAGGGCGATGAGGATGA-AGGAGAAGACAAAGATGACGAGGAATGGGTTGCTGTT 746 | || | ||||||| | |||||||||| || |||| |||||||||||||||||| Sbjct 287 A---CA-G-----TGAGGAT-ACAGGAGAAGACGAATATGAGGAGGAATGGGTTGCTGTT 336 Query 747 CTAGAAGATGGAGATGACGAGGATAACTATGTCTCAGACTCTGATGAATCACTTGG-AGA 805 ||||| |||| | ||| || | | | | |||||||| || || ||| Sbjct 337 CTAGAGGATG-A--TGATGA---T------G----A---T--GATGAATCGCT-GGCAGA 374 Query 806 CTGGGCAAACTTGGAAACGATGCG-ATATTGCCATCCTATGTATTTTGCC--AG-GAGGA 861 ||||||||| |||||||| ||| | | ||||||||| |||| |||| | ||| | Sbjct 375 CTGGGCAAATTTGGAAACAATGAGGAG-TTGCCATCCCATGTTTTTTTTTTTAAAGAGAA 433 Query 862 TGGCCGAGGTTGCTTCA-ACTGATCCTGTAAATTGGATGGATCAGCCGTCCGCTGGCCTT 920 || | |||||||||||| | ||||| ||| ||||||||||||||||||| ||||||||| Sbjct 434 TGACTGAGGTTGCTTCAGA-TGATCTTGTTGATTGGATGGATCAGCCGTCTGCTGGCCTT 492 Query 921 GCTATCCAAGGGC-T-CTTGAGTCCTGTCATT-GTGGAAGATCACTCAGATATCCAAAA- 976 |||||||| ||| | || ||||| | || || ||||||||| | ||||||||||||| Sbjct 493 GCTATCCA-GGGAATTCT-GAGTCATATC-TTAGTGGAAGATTATTCAGATATCCAAAGG 549 Query 977 ACATATCTCTGGTTG-TAT-A-T-CTACAGGCACTGA-CAAAAACAAGGA-GAGAGAAAA 1030 | | | || || | | || | | ||||| | || || || ||||||||| | |||||| Sbjct 550 A-A-A-CT-TGCT-GATAACAATTCTACAAGTAC-GAACAGAAACAAGGATGC-AGAAAA 602 Query 1031 CTCAGAAGAGA---T---AT---TT-G-AAGGCAT-TGGTGAGAATGAATCTGAGATA-- 1076 || |||||| | | | || | ||||||| |||||| | |||||||| ||| Sbjct 603 CTTAGAAGAAAAGCTTGCAGACATTAGTAAGGCATGTGGTGA-A--GAATCTGACATAGA 659 Query 1077 TT----GCATGTTGAAAATTCGAGAAATGCTA-TA-CAGTACTACAAGCTGGAGATAATA 1130 || ||| | |||||| |||| || | | || | |||||||||||||| ||| Sbjct 660 TTCATCGCAGGGTGAAAAAGAAAGAACTG-TGGTGGCATTT-TACAAGCTGGAGATGATA 717 Query 1131 AGAATCCAGCTCATCACGGCACAGGGGCATCAGACTGAAGTGGAAGTGGAAGACGTCAGG 1190 ||||| ||||| || || | || || || ||| ||| || |||||||| ||||| Sbjct 718 AGAATTCAGCTTATTACA-C-CA----CA--AG-CTGGAGTTGAGGTGGAAGATGTCAGA 768 Query 1191 AAAGCACAACCTGATGTTATTGCTTGTGCATCAGATGGTAT-ACTGA-CTCGTCTAGAAG 1248 |||||||||||||||||||||||| |||||||| ||| || | | | | ||| |||||| Sbjct 769 AAAGCACAACCTGATGTTATTGCTCATGCATCAGCTGGAATCA-TAAGC-CGTTTAGAAG 826 Query 1249 AAGATGGCGATAAACTAACTGAAGCTCTCAGATCTCTGTGTTGGAGAAATAATGGGATTC 1308 || ||| |||||| |||||||||| |||| |||||||||||||||| ||||||| |||| Sbjct 827 AATCTGGTGATAAAGTAACTGAAGCCCTCAAATCTCTGTGTTGGAGACATAATGGTATTC 886 Query 1309 AAGCAGAGGAAGTGAAGCTCATTGGGATAGATTCACTTGGTTTCGACCTTAGGATTTGCT 1368 ||||||||||||||||||| |||||| ||||||| || ||||| ||||| ||| ||||| Sbjct 887 AAGCAGAGGAAGTGAAGCTGATTGGGGTAGATTCCCTAGGTTTTGACCTCAGGCTTTGCG 946 Query 1369 CAGGAATGCAAA--TTGAGACATTACGGTTTGCATTCTCGATAAGGGCAACATCAGAACA 1426 ||||| ||||| ||||| |||| ||||||||||||| || |||||||||||||||| | Sbjct 947 CAGGA--GCAAAAATTGAGTCATTTCGGTTTGCATTCTTGACAAGGGCAACATCAGAAGA 1004 Query 1427 CAACGCTGAGGGAC-AGTTGAGAGAATTATTATTC 1460 ||| || ||||||| | | ||||| |||||||| Sbjct 1005 CAATGCAGAGGGACGAATA-AGAGAGCTATTATTC 1038 > Ahg897766 jgi|Araly1|897766|Al_scaffold_0005_1732 Length=2361 Score = 86.1 bits (46), Expect = 8e-16 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 570 CAAGTAATAGTAGGTTTTGATACGATGGAGATGATCAAGGACATGGAGCTGA 621 ||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1621 CAAGTTATAGTAGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGA 1672 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67991087325 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5