BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24070.1
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489264 jgi|Araly1|489264|fgenesh2_kg.6__2398__AT5G24070.1 1615 0.0
> Ahg489264 jgi|Araly1|489264|fgenesh2_kg.6__2398__AT5G24070.1
Length=1026
Score = 1615 bits (874), Expect = 0.0
Identities = 973/1022 (95%), Gaps = 2/1022 (0%)
Strand=Plus/Plus
Query 3 GCAGTTTGTGAATTTTTTCCCACTATTGGCCCTCGTAGTCATAAGCTTAGCCGGAAAGGC 62
|||||||||||| |||||||||||| ||||| ||||| |||||||||||||||||| |||
Sbjct 6 GCAGTTTGTGAAATTTTTCCCACTACTGGCCATCGTAATCATAAGCTTAGCCGGAACGGC 65
Query 63 TACGGTAGAGGCTGCGACGGGATTGAACCCTCCGGTGAAGCTTGTCTGGCATTATTACAA 122
||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 66 GACGATAGAGGCTGCGACGGGATTGAACCCTCCGGTGAAGCTGGTTTGGCATTATTACAA 125
Query 123 ACTTACTAACACTTGTGATGATGCAGAGACTTATATTAGATACCAAGTTGAAAAGTTTTA 182
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 126 AGTTACTAACACTTGTGATGATGCAGAAACTTATATTAGATACCAAGTTGAAAAGTTTTA 185
Query 183 TAAGAATGATAGTAGCATTGCCCCAAAGCTGCTTCGTCTCCTCTACTCCGATTGTATGGT 242
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 186 TAAGAATGATAGTAGCATTGCCCCAAAGCTTCTTCGTCTCCTCTACTCCGATTGTATGGT 245
Query 243 TAATGGATGTGATGGTTCGATTCTTTTGCAAGGACCAAACTCAGAGAGGACAGCTCCACA 302
|||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 246 TAATGGATGTGATGCTTCGGTTCTTTTGCAAGGACCAAACTCGGAGAGGACAGCTCCACA 305
Query 303 GAATCGAGGGCTTGGAGGTTTTGTGATAATCGATAAAATAAAGCAAGTTCTTGAATCACG 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GAATCGAGGGCTTGGAGGTTTTGTGATAATCGATAAAATAAAGCAAGTTCTTGAATCACG 365
Query 363 TTGTCCTGGTGTCGTTTCTTGCGCTGATATCCTCAACCTTGCCACTAGAGATGCTGTTCA 422
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CTGTCCTGGTGTTGTTTCTTGCGCTGATATCCTCAACCTTGCCACTAGAGATGCTGTTCA 425
Query 423 CATGGCCGGAGCACCGTCTTATCCTGTGTTTACGGGGAGAAGGGACGGTGGGACATTAAA 482
||||||||| ||||||||||||||||||||||| ||||||||||| || |||| ||||||
Sbjct 426 CATGGCCGGTGCACCGTCTTATCCTGTGTTTACCGGGAGAAGGGATGGAGGGAGATTAAA 485
Query 483 TGCAGACGCCGTAGATCTGCCGTCACCGTCCATCTCAGTCGATGAGTCATTGGCATATTT 542
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 486 TGCAGACGCCGTAGATCTGCCATCACCGTCCATCTCAGTCGATGAGTCATTGGCATACTT 545
Query 543 CAAGTCCAAAGGTCTTGACGTTTTGGATATGACTACTCTTCTAGGAGCACACTCAATGGG 602
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 546 CAAGTCCAAAGGTCTTGACGTTTTGGATATGACTACTCTTCTAGGAGCACATTCAATGGG 605
Query 603 GAAGACACATTGTAGCTACGTAGTGGACAGACTATACAACTTCAAGAACACAGGGAAACC 662
|||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 606 GAAGACACATTGCAGCTACATAGTGGACAGACTATACAACTTCAAGAACACTGGGAAACC 665
Query 663 AGATCCGACCATGAACACGACATTGGTGTCACAACTTCGATATCTTTGTCCTCCAAGAAC 722
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 666 AGATCCGACCATGAACTCAACATTGGTTTCACAACTTCGATATCTTTGTCCTCCAAGAAC 725
Query 723 ACAAAAGGGCCAAACCGATCCACTGGTTTACCTAAATCCAGACTCAGGCTCGAGCAACAG 782
||||||||| ||||| || ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 726 ACAAAAGGGACAAACGGACCCACTCGTTTACCTAAACCCAGACTCAGGCTCGAGCAACAG 785
Query 783 ATTCACAAGCTCATACTACTCTCGTGTCTTGTCTCATAACGCTGTTTT-ACGGGTGGACC 841
|||||| ||||| ||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 786 ATTCACCAGCTCCTACTACTCTCGTGTCTTGTCTCACAACGCTGTTTTGA-GGGTGGACC 844
Query 842 AAGAGTTGCTCAACAACGATGACTCGAAGGAGATCACGCAAGAGTTTGCTTCCGGTTTTG 901
||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 845 AAGAGTTGCTCAACAACGATGACTCAAAGGAGATCACGCAAGAGTTCGCTTCGGGTTTTG 904
Query 902 AAGATTTCAGAAAGTCTTTTGCTTTGGCAATGTCGAGAATGGGATCTATCAATGTTTTGA 961
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 905 AAGATTTCAGAAAGTCATTTGCTTTGGCAATGTCGAGGATGGGATCTATCAATGTTTTGA 964
Query 962 CGGGAACAGCTGGAGAGATTCGTCGAGACTGCAGAGTTACCAACGCTAATGACGGGGCCT 1021
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 965 CGGGAACAGCTGGAGAGATTCGGCGAGACTGCAGAGTTACCAACGCTAATTACGGGGCTT 1024
Query 1022 AA 1023
||
Sbjct 1025 AA 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38046671166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5