BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24080.1
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941940 jgi|Araly1|941940|scaffold_602484.1 2464 0.0
> Ahg941940 jgi|Araly1|941940|scaffold_602484.1
Length=2682
Score = 2464 bits (1334), Expect = 0.0
Identities = 1473/1541 (96%), Gaps = 6/1541 (0%)
Strand=Plus/Plus
Query 4 GGTAGCTTCAAGATCTCGACGGTCCAAGAGACCAACTACTATTTTTCAGAACGTTCTGTC 63
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1146 GGTACCTTCAAGATCTCGACGGTCCAAGAGACCAACTACTATTTCTCAGAACGTTCTGTT 1205
Query 64 ATCGAAAATATCAGCGATATCAGCAACGTGAGGAAATGCGGTGAGATGTGTTTGTCAGAT 123
||||| |||||||||||||| | | |||||||| ||||||||||||||||||||| |||
Sbjct 1206 ATCGAGAATATCAGCGATAT--G-AGCGTGAGGAGATGCGGTGAGATGTGTTTGTCGGAT 1262
Query 124 TGCAAGTGTGTAGCTTCAGTTTATGGTTTAGATGATGAGAAGCCTTATTGTTGGATTTTA 183
||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||||| ||
Sbjct 1263 TGCAAGTGTGTGGCTTCAGTTTACGGTTTAGATGAAGAGACGCCTTATTGTTGGATTCTA 1322
Query 184 AAGAGTCTGAATTTTGGCGGGTTTCGAGATCCTGGCTCAACCCTTTTCGTGAAGACTAGA 243
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1323 AAGAGTCTGAATTTTGGCGGGTTTCGAGATCCTGGCTCGACCCTTTTCGTGAAGACTAGA 1382
Query 244 GCTAATGAATCTTATCCCTCAAATTCGAATAATAATGATTCTAAATCGCGTAAGAGCCAC 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 GCTAATGAATCTTATCCCTCAAATTCGAATAATAATGATTCTAAATCGCGTAAGAGCCAC 1442
Query 304 GGATTAAGACAAAAGGTTCTGGTGATTCCTATAGTTGTGGGGATGCTTGTGCTTGTGGCA 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1443 GGATTAAGACAAAAGGTTCTGGTGATTCCTATAGTTGTGGGGATGCTTGTGCTTGTGGTA 1502
Query 364 CTACTTGGGATGTTGTTATACTATAATTTAGATAGGAAGAGAACACTAAAGAGAGCCGCA 423
||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct 1503 TTACTTGGGATGTTGTTATATTATAATGTAGATAGGCAGAGAACACTAAAGAGAGCCGCA 1562
Query 424 AAGAACTCTCTTATCCTTTGTGACTCTCCTGTGAGTTTCACTTACCGCGATCTCCAGAAC 483
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 AAGAACTCGCTTATCCTTTGTGACTCTCCTGTGAGTTTCACTTACCGCGATCTCCAGAAC 1622
Query 484 TGTACCAACAACTTCTCCCAACTTCTTGGATCAGGTGGATTTGGGACAGTATACAAAGGA 543
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 TGTACCAATAACTTCTCCCAACTTCTTGGATCAGGTGGATTTGGGACAGTATACAAAGGA 1682
Query 544 ACAGTAGCGGGTGAAACGCTAGTCGCGGTGAAGAGATTAGACAGAGCATTATCTCATGGC 603
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1683 ACAGTAGCGGGTGAAACGCTGGTCGCGGTGAAGAGATTAGACAGAGCATTATCTCATGGT 1742
Query 604 GAGAGAGAGTTCATCACTGAAGTCAATACCATTGGTTCAATGCATCACATGAACCTTGTT 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1743 GAGAGAGAGTTCATCACTGAAGTCAATACCATTGGTTCAATGCATCACATGAACCTCGTT 1802
Query 664 CGCTTGTGTGGTTACTGCTCGGAAGACTCACACCGGCTTCTAGTTTATGAGTACATGATA 723
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1803 CGCTTGTGTGGTTACTGCTCGGAAGACTCACATCGGCTTCTAGTTTATGAGTACATGATA 1862
Query 724 AATGGGTCGTTAGACAAATGGATATTCTCTTCAGAACAGACAGCTAATCTACTTGATTGG 783
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1863 AATGGGTCGTTAGACAAATGGATATTCTCTTCAGAACAGACAGCCAATCTACTTGATTGG 1922
Query 784 CGAACACGTTTTGAAATAGCGGTTGCGACTGCACAAGGAATCGCATATTTTCATGAGCAG 843
|||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1923 CGAACACGTTTTGAGATAGCGGTTGCGACTGCACAGGGAATCGCGTATTTTCATGAGCAA 1982
Query 844 TGTCGAAACAGGATTATACATTGCGACATTAAACCTGAAAACATCTTGTTGGATGATAAT 903
||||| |||||||| || ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1983 TGTCGGAACAGGATAATTCATTGCGACATTAAACCTGAAAACATCTTATTGGATGAGAAT 2042
Query 904 TTTTGTCCTAAGGTATCAGATTTTGGGCTAGCCAAGATGATGGGGAGAGAGCATTCGCAT 963
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 2043 TTTTGTCCTAAGGTATCAGATTTTGGGCTAGCCAAAATGATGGGGAGAGAGCATTCACAT 2102
Query 964 GTGGTTACGATGATTAGAGGG-ACGAGAGGGTATCTAGCGCCCGAATGGGTGAGTAACCG 1022
|| |||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 2103 GTAGTTACGATGATTAG-GGGTACGAGAGGCTATCTAGCGCCTGAATGGGTGAGTAACCG 2161
Query 1023 CCCGATCACGGTGAAGGCCGATGTGTATAGTTATGGAATGCTTCTTCTAGAGATCGTAGG 1082
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2162 CCCGATCACGGTGAAGGCCGATGTGTATAGTTATGGAATGCTTCTTCTTGAGATCGTTGG 2221
Query 1083 TGGTAGGAGAAATCTTGATATGTCCTATGACGCTGAGGATTTCTTTTACCCTGGATGGGC 1142
|||||||||||||||||||||||||| || | |||| |||||||||||||||||||||||
Sbjct 2222 TGGTAGGAGAAATCTTGATATGTCCTTTGGCACTGATGATTTCTTTTACCCTGGATGGGC 2281
Query 1143 CTACAAGGAACTAACGAATGGGACATCTTTGAAAGCTGTGGATAAAAGGCTACAAGGAGT 1202
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 2282 CTACAAGGAACTAACGAATGGGACAGCTTTGAAAGCTGTGGATAAGAGGCTACAAGGAGT 2341
Query 1203 AGCAGAGGAAGAAGAAGTAGTGAAGGCTCTTAAAGTGGCTTTCTGGTGCATACAAGACGA 1262
||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct 2342 AGCAGAGGAAGAAGAAGTATTGAAAGCTCTTAAAGTAGCTTTCTGGTGCATACAAGACGA 2401
Query 1263 AGTATCGATGAGGCCGTCGATGGGTGAGGTGGTTAAGCTTTTAGAAGGCACTTCGGATGA 1322
||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 2402 AGTATCGTTGAGGCCTTCGATGGGTGAGGTGGTGAAGCTTTTAGAAGGTTCTTCGGACGA 2461
Query 1323 GATAAATCTGCCACCGATGCCACAGACGATTCTAGAACTTATAGAGGAAGGATTGGAGGA 1382
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2462 GGTAAATCTGCCACCGATGCCGCAGACGATTCTAGAACTTATAGAGGAAGGATTGGAGGA 2521
Query 1383 TGTGTATAGAGCGATGAGGAGAGAGTTCAATAATCAGCTTAGCTCTTTGACTGTTAATAC 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2522 TGTGTATAGAGCGATGAGGAGAGAGTTCAATAATCAGCTTAGCTCTTTGACTGTTAATAC 2581
Query 1443 AATCACAACCTCTCAGAGTTATCGTTCCTCCTCTCGGTCTCATGCTACTTGTAGTTATTC 1502
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2582 CATCACAACCTCTCAGAGTTATCATTCCTCCTCTCGGTCTCATGCTACTTGTAGTTATTC 2641
Query 1503 TTCAATGTCTCCTAGGTAGttttc-ttttcttttttGCATC 1542
||||||||||||||||||||||| |||| |||||||||||
Sbjct 2642 TTCAATGTCTCCTAGGTAGTTTTTGTTTTGTTTTTTGCATC 2682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60030226120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5