BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24090.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489265 jgi|Araly1|489265|fgenesh2_kg.6__2399__AT5G24090.1 1572 0.0
> Ahg489265 jgi|Araly1|489265|fgenesh2_kg.6__2399__AT5G24090.1
Length=1070
Score = 1572 bits (851), Expect = 0.0
Identities = 988/1052 (94%), Gaps = 17/1052 (2%)
Strand=Plus/Plus
Query 1 AACAAAAGTCATATTTTACTTCTTTTAT-aaaaaaaGAAGTTAAGCAATaacaaacaaac 59
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 AACAAAAGTCATCTTTTACTTCTTTTATAAAAAAAAGAAGTTAAGCAATAACAAACAAAC 60
Query 60 acataaccacaaagaagacaaaacatctttaaccaaaaacatgaccaacatGACTCTTCG 119
||||||||||||||| | | | | ||||||||||| ||||| | |||||
Sbjct 61 ACATAACCACAAAGATG-------A-C----A--AAAAACATGACTAACATTAATCTTCT 106
Query 120 CAAGCATGTTATATACTTTCTTTTCTTCATAAGCTGCTCTCTTAGCAAACCCTCCGATGC 179
|||||||||||||||| |||| |||||||||||||||| | ||| |||||||||||||||
Sbjct 107 CAAGCATGTTATATACCTTCTCTTCTTCATAAGCTGCTTTATTACCAAACCCTCCGATGC 166
Query 180 ATCCAGAGGTGGCATAGCCATCTATTGGGGCCAAAACGGAAACGAAGGTAACCTCTCTGC 239
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 167 ATCCAGAGGTGGCATAGCCATCTATTGGGGCCAAAACGGCAACGAAGGTAATCTCTCGGC 226
Query 240 CACGTGTGCCACCGGCCGGTATGCTTACGTCAACGTCGCCTTTCTTGTGAAATTCGGAAA 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 CACGTGTGCGACCGGCCGGTATGCTTACGTCAACGTCGCCTTTCTTGTGAAATTCGGAAA 286
Query 300 TGGCCAAACACCGGAGCTCAACCTTGCCGGCCACTGCAACCCTGCGGCGAACACTTGCAC 359
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 287 TGGTCAAACACCGGAGCTCAACCTTGCCGGCCACTGCAACCCTGCGGCCAACACTTGCAC 346
Query 360 CCATTTTGGCTCTCAGGTCAAAGATTGTCAGTCTCGTGGCATCAAGGTTATGTTGTCTCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CCATTTTGGCTCTCAGGTCAAAGATTGTCAGTCTCGTGGCATCAAGGTTATGTTGTCTCT 406
Query 420 CGGCGGCGGGATTGGAAACTACTCGATTGGGTCGAGGGAGGACGCAAAAGTTATCGCTGA 479
|||||||||||| |||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct 407 CGGCGGCGGGATCGGAAACTACTCGATTGGGTCCAAGGAGGACGCAAAAGTTGTCGCTGA 466
Query 480 TTATCTGTGGAACAACTTCTTGGGAGGAAAATCATCATCACGTCCCTTAGGTGATGCTGT 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TTACCTGTGGAACAACTTCTTGGGAGGAAAATCATCATCACGTCCCTTAGGTGATGCTGT 526
Query 540 TCTAGATGGTATCGATTTCAATATCGAGCTTGGCTCTCCTCAACACTGGGATGATCTCGC 599
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 TCTTGATGGTATCGATTTCAATATCGAGCTTGGCTCTCCTCAACACTGGGATGATCTCGC 586
Query 600 CAGGACTCTCTCAAAGTTTAGCCACAGAGGAAGAAAAATATATCTAACAGGAGCTCCTCA 659
|||| ||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 587 CAGGTCTCTCTCAAAGCTTAGCCACAGAGGCAGAAAAGTATATTTAACAGGAGCTCCTCA 646
Query 660 ATGTCCATTTCCAGACAGATTAATGGGAAGTGCTCTCAACACTAAACGTTTTGACTATGT 719
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 647 ATGTCCATTTCCAGACAGATTAATGGGAAATGCTCTCAACACTAGACGTTTTGACTATGT 706
Query 720 TTGGATTCAATTCTACAATAATCCACCGTGTTCATACAGTTCAGGTAATACTCAAAACCT 779
|||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||
Sbjct 707 TTGGATCCAATTCTACAACAATCCACCGTGTTCATACACTTCAGGAAATACTCAAAACCT 766
Query 780 CTTCGATTCATGGAACAAGTGGACCACTTCAATCGCAGCCCA-AAAATTCTTCTTGGGTC 838
||| ||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 767 CTTTGATTCGTGGAACAAGTGGACCACTTCAATCACAGCCCAGAAAAT-CTTCTTGGGTC 825
Query 839 TACCGGCAGCTCCTGAAGCTGCCGGAAGTGGCTATATCCCACCAGATGTACTGACTTCAC 898
| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 826 TTCCGGCAGCTCCCGAAGCTTCCGGAAGTGGCTATATCCCGCCAGATGTACTGACTTCAC 885
Query 899 AGATTCTTCCGACTTTAAAGAAGTCTAGGAAGTATGGAGGTGTAATGCTTTGGTCTAAAT 958
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AGATACTTCCGACTTTAAAGAAGTCTAGGAAGTATGGAGGTGTAATGCTTTGGTCTAAAT 945
Query 959 TCTGGGATGATAAAAATGGATACAGTTCATCTATATTGGCTAGTGTGTGAAAAGAATCGT 1018
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TTTGGGATGATAAAAATGGATACAGTTCATCTATATTGGCTAGTGTGTGAAAAGAATCGT 1005
Query 1019 TATGGCCATTGTATGTGTATCAATTCTCTCGT 1050
||| ||||| ||||| |||||||||||||||
Sbjct 1006 AATGACCATTCTATGTATATCAATTCTCTCGT 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5