BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24100.1 Length=2248 Score E Sequences producing significant alignments: (Bits) Value Ahg489266 jgi|Araly1|489266|fgenesh2_kg.6__2400__AT5G24100.1 2976 0.0 > Ahg489266 jgi|Araly1|489266|fgenesh2_kg.6__2400__AT5G24100.1 Length=2170 Score = 2976 bits (1611), Expect = 0.0 Identities = 1960/2124 (92%), Gaps = 41/2124 (2%) Strand=Plus/Plus Query 33 TAAACGTTTACTAGCGTTTTGACTTTCCTAAACAATGATCTTTTATGTCTTCCTTCTTCA 92 |||||||||| ||||||||||||||||||||| ||| |||||||||| |||| Sbjct 1 TAAACGTTTATTAGCGTTTTGACTTTCCTAAATAATAATCTTTTATG-------GCTTC- 52 Query 93 ATAGCTATTGCCTATAG-TTTTGCAGACCAAActtctttggtctttctatcttctcttct 151 | ||||||||||| ||||||||||| |||||||||| ||||||| |||||||| || Sbjct 53 ----C-ATTGCCTATAGTTTTTGCAGACCGAACTTCTTTGTTCTTTCTCTCTTCTCTGCT 107 Query 152 ttctaaattctcataactatctcttacattctctcttctcAATTTAAACTAAAGTTTCAG 211 || ||||||||||| | ||||||||||||||||||||| ||||| |||||||||| || | Sbjct 108 TTTTAAATTCTCATTATTATCTCTTACATTCTCTCTTCCCAATTCAAACTAAAGTCTC-G 166 Query 212 CCAGTCCTTTAATGAGATTCCGCATTTGAACTATATAAAAGTCTCCATCACATAACCAGA 271 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 167 CCAGTCC-TTAATGAGATTCCGCATTTGAACTATATAAAAGTCTCCATCACATAACCAGA 225 Query 272 GAAATTAGTAAGAAGATGAGTAGAGGAAGATCTTT-CATCTTCTATTTTGTTTTATTTCT 330 ||||||| ||||||||||||| | |||||| ||| |||||||||| |||||||| |||| Sbjct 226 GAAATTATTAAGAAGATGAGT--A-GAAGAT-TTTCCATCTTCTATGTTGTTTTACTTCT 281 Query 331 CTTCTTTGGATCATCGGCTCTGTATTCTCAGGTCACCGGTGATCTAGCCGGTGACAGACA 390 ||||||||||||| | |||||| ||||| |||||||||||| |||||||| |||||||| Sbjct 282 CTTCTTTGGATCAACTTCTCTGTTTTCTCGGGTCACCGGTGACCTAGCCGGCGACAGACA 341 Query 391 AGCCCTTCTCGATTTCCTCAACAACATCATTCACCCACGGTCTCTAGCGTGGAACACAAG 450 ||| |||||||| |||| |||||||||| |||||||||||||||||||||||||| |||| Sbjct 342 AGCTCTTCTCGACTTCCGCAACAACATCGTTCACCCACGGTCTCTAGCGTGGAACGCAAG 401 Query 451 CAGCCCGGTATGCACCACGTGGCCAGGGGTCACATGCGACATAGACGGCACACGTGTCAC 510 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 402 CAGCCCGGTATGCACCACGTGGCCAGGGGTCACATGCGACAGAGACGGCACACGTGTCAC 461 Query 511 TGCCCTTCACTTGCCCGGAGCAAGTCTTCTAGGAGTGATCCCACCTG-GTACTATCAGCC 569 |||||||||||||||||||||||||||||||||||||||||| || | | |||||||||| Sbjct 462 TGCCCTTCACTTGCCCGGAGCAAGTCTTCTAGGAGTGATCCCGCC-GCGAACTATCAGCC 520 Query 570 GTCTATCGGAGCTTCAGATCCTCAGTCTTCGATCCAACGGCCTACGAGGGCCGTTCCCAA 629 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 521 GTCTATCGGAGCTTCAGATCCTCAGTCTCCGATCCAACGGCCTACGAGGACCGTTCCCAA 580 Query 630 TTGATTTCTTGCAGCTTAAGAAACTCAAAGCAATTAGTCTCGGGAACAACAGATTCTCTG 689 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 581 TTGATTTCTTGCAGCTTAAGAAACTCAAAGCAATTAGTCTCAGCAACAACAGATTCTCTG 640 Query 690 GCCCATTACCATCCGATTACGCCACGTGGACGAATCTCACTGTTCTTGATCTGTACAGTA 749 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| | ||| Sbjct 641 GCCCATTACCGTCCGATTACGCCACGTGGACGAATCTCACCGTTCTTGATCTGTCCGGTA 700 Query 750 ACCGGTTTAACGGTAGTATTCCCGCGGGATTTGCTAATCTTACCGGACTCGTCTCGCTTA 809 || ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 701 ACAGGTTTAACGGTAGCATTCCCGCGGGATTTGCTAATCTTACCGGACTCGTCTCACTTA 760 Query 810 ACCTAGCTAAAAACTCATTCTCCGGTGAGATTCCGGATCTTAATCTCCCCGGTCTACGCA 869 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 761 ACCTAGCTAAAAACTCATTTTCCGGTGAGATTCCGGATCTTAATCTCCCCGGTCTACACA 820 Query 870 GACTTAACTTTTCCAACAACAATCTCACCGGATCAATCCCAAATTCTCTGAAAAGATTCG 929 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 821 GACTTAACTTTTCCAACAACAATCTCACCGGATCAATCCCAAATTCTCTGAAAAGATTCG 880 Query 930 GGAACTCGGCTTTTTCCGGCAACAACTTAGTCTT-CGAAAATGCCCCTCCTCCGGCGGTA 988 ||||||||||||||||||||||||||||||| || |||||||||||||||||||| | | Sbjct 881 GGAACTCGGCTTTTTCCGGCAACAACTTAGT-TTACGAAAATGCCCCTCCTCCGGTGATT 939 Query 989 GTTTCATTCAAAGAGCAAA-AGAAAAACGGCATCTATATCTCTGAACCCGCGATTCTCGG 1047 | | |||||| ||| | ||||| || |||||||| || ||||||||||||||||| Sbjct 940 CCTAAAGAGAAAGAG-AAAGAAAAAAAGGGGATCTATATATCCGAACCCGCGATTCTCGG 998 Query 1048 GATAGCGATTAGCGTTTGCTTCGTGATATTCTTTGTAATCGCGGTTGTGATAATCGTTTG 1107 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 999 GATAGCGATTAGCGTTTGCTTCGTGATATTCTTTGTAATCGCGGTTCTGATAATCGTTTG 1058 Query 1108 CTATGTGAAAAGGCAG-AG----GA-AGTCAGAGACAGAACCAAAACCAGATAAGTTGAA 1161 |||||| ||||| ||| || || || |||||||||||||||||||||| |||||||| Sbjct 1059 CTATGTTAAAAGACAGAAGAAACGAGAGACAGAGACAGAACCAAAACCAGAGAAGTTGAA 1118 Query 1162 ACTAGCTAAGAAGATGCCAAGTGAGAAGGAAGTTTCTAAATTAGGAAAAGAGAAGAATAT 1221 || ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1119 ACCAGCGCAGAAGATGCCAAGTGAGAAGGAAGTTTCTAAATTAGGAAAAGAGCAGAATAT 1178 Query 1222 TGAAGACATGGAGGATAAGAGCGAAATTAACAAAGTAATGTTCTTTGAAGGAAGTAATCT 1281 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1179 AGAAGACATGGAGGATAAGAGCGAAATTAACAAAGTAATGTTTTTTGAAGGAAGCAATCT 1238 Query 1282 GGCTTTTAACTTGGAAGA-CTTGTTGATAGCTTCTGCAGAGTTTCTAGGGAAGGGCGTTT 1340 ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || Sbjct 1239 AGCTTTTAACTTGGAAGACCTT-TTGATAGCTTCTGCAGAGTTTCTAGGGAAGGGCACTT 1297 Query 1341 TTGGGATGACGTATAAGGCGGTTCTAGAAGATTCCAAGGTTATCGCTGTTAAGCGGTTGA 1400 | |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| Sbjct 1298 TCGGGATGACGTATAAGGCGGTTCTAGAAGATTCCAAGGTCATCGCGGTTAAGAGGTTGA 1357 Query 1401 AAGACATAGTAGTGTCCCGGAAGGATTTTAAACATCAAATGGAGATTGTAGGAAACATTA 1460 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1358 AGGACATAGTAGTGTCCCGGAAGGATTTTAAACATCAAATGGAGATTGTAGGAAACATTA 1417 Query 1461 AGCACGAGAACGTTGCTCCCTTAAGAGCTTACGTGTGTTCCAAGGAAGAAAAGCTTATGG 1520 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1418 AGCACGAGAACGTTGCTCCCTTAAGGGCTTACGTGTGTTCCAAGGAAGAGAAGCTTATGG 1477 Query 1521 TGTATGATTA-TGACTCTAACGGCAGTCTCTCTCTTCGTCTTCATGGCAAGAACGCAGAC 1579 |||||||||| | ||||| | |||||||| |||||||||||||||||||||||| | ||| Sbjct 1478 TGTATGATTACT-ACTCTGATGGCAGTCTTTCTCTTCGTCTTCATGGCAAGAACACCGAC 1536 Query 1580 GAGGGTCACGTCCCGTTGAACTGGGAGACGCGATTGAGATTCATGATCGGAGTAGCAAAA 1639 ||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1537 GAGGGCCATGTCCCGTTGAACTGGGAAACACGATTGAGATTCATGATCGGAGTAGCAAAA 1596 Query 1640 GGATTAGGTCACATACATACACAAAACCTCGCACATGGAAACATCAAATCTTCTAACGTC 1699 |||||||||||| |||| | ||| || ||||||||||||||||||||||||||||||||| Sbjct 1597 GGATTAGGTCACTTACACATACAGAAGCTCGCACATGGAAACATCAAATCTTCTAACGTC 1656 Query 1700 TTCATGAACTCGGAAGGATATGGGTGTATATCGGAAGCCGGTTTACCTCTGTTAACCAAC 1759 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1657 TTCATGAACTCGGAAGGATATGGATGTATATCGGAAGCCGGTTTACCTCTGTTAACCAAC 1716 Query 1760 CCGGTTGTGAGGGCAGATTCATCAGCCAGATCGGTACTACGTTACCGTGCGC-CAGAAGT 1818 |||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||| Sbjct 1717 CCGGTTGTGAGGGCAGATTCATCAGCCAGATCAATACTACGTTACCGTGC-CTCAGAAGT 1775 Query 1819 AACCGACACGAGGAGATCTACGCCAGAATCAGACATATACAGTTTTGGAATATTGATGCT 1878 ||||||||| ||||||||||| || ||||||||| |||||||||||||||| |||||| | Sbjct 1776 AACCGACACAAGGAGATCTACACCGGAATCAGACGTATACAGTTTTGGAATCTTGATGTT 1835 Query 1879 GGAGACTCTAACCGGAAGATCGA-TTATGGATGATAGAAAGGAAGGGATAGATCTAGTGG 1937 ||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| Sbjct 1836 GGAGACTCTAACCGGAAGATCGAGTT-TGGATGATAGAAAGGAAGGGATAGATCTGGTGG 1894 Query 1938 TATGGGTGAATGACGTTATTTCAAAACAATGGACAGGTGAAGTGTTTGATTTGGAGCTTG 1997 ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1895 TATGGGTTAATGAAGTTATTGCAAAACAATGGACAGGTGAAGTGTTTGATTTGGAGCTTG 1954 Query 1998 TGAAAACTCCTAACGTTGAAGCAAAGTTGCTTCAGATGTTGCAGTTAGGAACAAGTTGTA 2057 |||| ||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||| Sbjct 1955 TGAAGACTCCTAACATTGAATCAAAGTTACTTCAGATGTTGCAGTTAGGGACAAGTTGTG 2014 Query 2058 CGGCTATGGTTCCGGCAAAGAGACCGGATATGGTGAAAGTGGTTGAGACTTTGGAAGAGA 2117 |||||| ||||||||| |||||||| || |||||||||||| ||||||||||||| |||| Sbjct 2015 CGGCTAGGGTTCCGGCGAAGAGACCAGAGATGGTGAAAGTGATTGAGACTTTGGAGGAGA 2074 Query 2118 TTGAGAGAGACTGATTAATAAATT 2141 ||||||| |||||||||||| ||| Sbjct 2075 TTGAGAGGGACTGATTAATACATT 2098 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84636524390 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5