BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24100.1
Length=2248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489266 jgi|Araly1|489266|fgenesh2_kg.6__2400__AT5G24100.1 2976 0.0
> Ahg489266 jgi|Araly1|489266|fgenesh2_kg.6__2400__AT5G24100.1
Length=2170
Score = 2976 bits (1611), Expect = 0.0
Identities = 1960/2124 (92%), Gaps = 41/2124 (2%)
Strand=Plus/Plus
Query 33 TAAACGTTTACTAGCGTTTTGACTTTCCTAAACAATGATCTTTTATGTCTTCCTTCTTCA 92
|||||||||| ||||||||||||||||||||| ||| |||||||||| ||||
Sbjct 1 TAAACGTTTATTAGCGTTTTGACTTTCCTAAATAATAATCTTTTATG-------GCTTC- 52
Query 93 ATAGCTATTGCCTATAG-TTTTGCAGACCAAActtctttggtctttctatcttctcttct 151
| ||||||||||| ||||||||||| |||||||||| ||||||| |||||||| ||
Sbjct 53 ----C-ATTGCCTATAGTTTTTGCAGACCGAACTTCTTTGTTCTTTCTCTCTTCTCTGCT 107
Query 152 ttctaaattctcataactatctcttacattctctcttctcAATTTAAACTAAAGTTTCAG 211
|| ||||||||||| | ||||||||||||||||||||| ||||| |||||||||| || |
Sbjct 108 TTTTAAATTCTCATTATTATCTCTTACATTCTCTCTTCCCAATTCAAACTAAAGTCTC-G 166
Query 212 CCAGTCCTTTAATGAGATTCCGCATTTGAACTATATAAAAGTCTCCATCACATAACCAGA 271
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 CCAGTCC-TTAATGAGATTCCGCATTTGAACTATATAAAAGTCTCCATCACATAACCAGA 225
Query 272 GAAATTAGTAAGAAGATGAGTAGAGGAAGATCTTT-CATCTTCTATTTTGTTTTATTTCT 330
||||||| ||||||||||||| | |||||| ||| |||||||||| |||||||| ||||
Sbjct 226 GAAATTATTAAGAAGATGAGT--A-GAAGAT-TTTCCATCTTCTATGTTGTTTTACTTCT 281
Query 331 CTTCTTTGGATCATCGGCTCTGTATTCTCAGGTCACCGGTGATCTAGCCGGTGACAGACA 390
||||||||||||| | |||||| ||||| |||||||||||| |||||||| ||||||||
Sbjct 282 CTTCTTTGGATCAACTTCTCTGTTTTCTCGGGTCACCGGTGACCTAGCCGGCGACAGACA 341
Query 391 AGCCCTTCTCGATTTCCTCAACAACATCATTCACCCACGGTCTCTAGCGTGGAACACAAG 450
||| |||||||| |||| |||||||||| |||||||||||||||||||||||||| ||||
Sbjct 342 AGCTCTTCTCGACTTCCGCAACAACATCGTTCACCCACGGTCTCTAGCGTGGAACGCAAG 401
Query 451 CAGCCCGGTATGCACCACGTGGCCAGGGGTCACATGCGACATAGACGGCACACGTGTCAC 510
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 402 CAGCCCGGTATGCACCACGTGGCCAGGGGTCACATGCGACAGAGACGGCACACGTGTCAC 461
Query 511 TGCCCTTCACTTGCCCGGAGCAAGTCTTCTAGGAGTGATCCCACCTG-GTACTATCAGCC 569
|||||||||||||||||||||||||||||||||||||||||| || | | ||||||||||
Sbjct 462 TGCCCTTCACTTGCCCGGAGCAAGTCTTCTAGGAGTGATCCCGCC-GCGAACTATCAGCC 520
Query 570 GTCTATCGGAGCTTCAGATCCTCAGTCTTCGATCCAACGGCCTACGAGGGCCGTTCCCAA 629
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 521 GTCTATCGGAGCTTCAGATCCTCAGTCTCCGATCCAACGGCCTACGAGGACCGTTCCCAA 580
Query 630 TTGATTTCTTGCAGCTTAAGAAACTCAAAGCAATTAGTCTCGGGAACAACAGATTCTCTG 689
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 581 TTGATTTCTTGCAGCTTAAGAAACTCAAAGCAATTAGTCTCAGCAACAACAGATTCTCTG 640
Query 690 GCCCATTACCATCCGATTACGCCACGTGGACGAATCTCACTGTTCTTGATCTGTACAGTA 749
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct 641 GCCCATTACCGTCCGATTACGCCACGTGGACGAATCTCACCGTTCTTGATCTGTCCGGTA 700
Query 750 ACCGGTTTAACGGTAGTATTCCCGCGGGATTTGCTAATCTTACCGGACTCGTCTCGCTTA 809
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 701 ACAGGTTTAACGGTAGCATTCCCGCGGGATTTGCTAATCTTACCGGACTCGTCTCACTTA 760
Query 810 ACCTAGCTAAAAACTCATTCTCCGGTGAGATTCCGGATCTTAATCTCCCCGGTCTACGCA 869
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 761 ACCTAGCTAAAAACTCATTTTCCGGTGAGATTCCGGATCTTAATCTCCCCGGTCTACACA 820
Query 870 GACTTAACTTTTCCAACAACAATCTCACCGGATCAATCCCAAATTCTCTGAAAAGATTCG 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 GACTTAACTTTTCCAACAACAATCTCACCGGATCAATCCCAAATTCTCTGAAAAGATTCG 880
Query 930 GGAACTCGGCTTTTTCCGGCAACAACTTAGTCTT-CGAAAATGCCCCTCCTCCGGCGGTA 988
||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |
Sbjct 881 GGAACTCGGCTTTTTCCGGCAACAACTTAGT-TTACGAAAATGCCCCTCCTCCGGTGATT 939
Query 989 GTTTCATTCAAAGAGCAAA-AGAAAAACGGCATCTATATCTCTGAACCCGCGATTCTCGG 1047
| | |||||| ||| | ||||| || |||||||| || |||||||||||||||||
Sbjct 940 CCTAAAGAGAAAGAG-AAAGAAAAAAAGGGGATCTATATATCCGAACCCGCGATTCTCGG 998
Query 1048 GATAGCGATTAGCGTTTGCTTCGTGATATTCTTTGTAATCGCGGTTGTGATAATCGTTTG 1107
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 999 GATAGCGATTAGCGTTTGCTTCGTGATATTCTTTGTAATCGCGGTTCTGATAATCGTTTG 1058
Query 1108 CTATGTGAAAAGGCAG-AG----GA-AGTCAGAGACAGAACCAAAACCAGATAAGTTGAA 1161
|||||| ||||| ||| || || || |||||||||||||||||||||| ||||||||
Sbjct 1059 CTATGTTAAAAGACAGAAGAAACGAGAGACAGAGACAGAACCAAAACCAGAGAAGTTGAA 1118
Query 1162 ACTAGCTAAGAAGATGCCAAGTGAGAAGGAAGTTTCTAAATTAGGAAAAGAGAAGAATAT 1221
|| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1119 ACCAGCGCAGAAGATGCCAAGTGAGAAGGAAGTTTCTAAATTAGGAAAAGAGCAGAATAT 1178
Query 1222 TGAAGACATGGAGGATAAGAGCGAAATTAACAAAGTAATGTTCTTTGAAGGAAGTAATCT 1281
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1179 AGAAGACATGGAGGATAAGAGCGAAATTAACAAAGTAATGTTTTTTGAAGGAAGCAATCT 1238
Query 1282 GGCTTTTAACTTGGAAGA-CTTGTTGATAGCTTCTGCAGAGTTTCTAGGGAAGGGCGTTT 1340
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1239 AGCTTTTAACTTGGAAGACCTT-TTGATAGCTTCTGCAGAGTTTCTAGGGAAGGGCACTT 1297
Query 1341 TTGGGATGACGTATAAGGCGGTTCTAGAAGATTCCAAGGTTATCGCTGTTAAGCGGTTGA 1400
| |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct 1298 TCGGGATGACGTATAAGGCGGTTCTAGAAGATTCCAAGGTCATCGCGGTTAAGAGGTTGA 1357
Query 1401 AAGACATAGTAGTGTCCCGGAAGGATTTTAAACATCAAATGGAGATTGTAGGAAACATTA 1460
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 AGGACATAGTAGTGTCCCGGAAGGATTTTAAACATCAAATGGAGATTGTAGGAAACATTA 1417
Query 1461 AGCACGAGAACGTTGCTCCCTTAAGAGCTTACGTGTGTTCCAAGGAAGAAAAGCTTATGG 1520
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1418 AGCACGAGAACGTTGCTCCCTTAAGGGCTTACGTGTGTTCCAAGGAAGAGAAGCTTATGG 1477
Query 1521 TGTATGATTA-TGACTCTAACGGCAGTCTCTCTCTTCGTCTTCATGGCAAGAACGCAGAC 1579
|||||||||| | ||||| | |||||||| |||||||||||||||||||||||| | |||
Sbjct 1478 TGTATGATTACT-ACTCTGATGGCAGTCTTTCTCTTCGTCTTCATGGCAAGAACACCGAC 1536
Query 1580 GAGGGTCACGTCCCGTTGAACTGGGAGACGCGATTGAGATTCATGATCGGAGTAGCAAAA 1639
||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1537 GAGGGCCATGTCCCGTTGAACTGGGAAACACGATTGAGATTCATGATCGGAGTAGCAAAA 1596
Query 1640 GGATTAGGTCACATACATACACAAAACCTCGCACATGGAAACATCAAATCTTCTAACGTC 1699
|||||||||||| |||| | ||| || |||||||||||||||||||||||||||||||||
Sbjct 1597 GGATTAGGTCACTTACACATACAGAAGCTCGCACATGGAAACATCAAATCTTCTAACGTC 1656
Query 1700 TTCATGAACTCGGAAGGATATGGGTGTATATCGGAAGCCGGTTTACCTCTGTTAACCAAC 1759
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1657 TTCATGAACTCGGAAGGATATGGATGTATATCGGAAGCCGGTTTACCTCTGTTAACCAAC 1716
Query 1760 CCGGTTGTGAGGGCAGATTCATCAGCCAGATCGGTACTACGTTACCGTGCGC-CAGAAGT 1818
|||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 1717 CCGGTTGTGAGGGCAGATTCATCAGCCAGATCAATACTACGTTACCGTGC-CTCAGAAGT 1775
Query 1819 AACCGACACGAGGAGATCTACGCCAGAATCAGACATATACAGTTTTGGAATATTGATGCT 1878
||||||||| ||||||||||| || ||||||||| |||||||||||||||| |||||| |
Sbjct 1776 AACCGACACAAGGAGATCTACACCGGAATCAGACGTATACAGTTTTGGAATCTTGATGTT 1835
Query 1879 GGAGACTCTAACCGGAAGATCGA-TTATGGATGATAGAAAGGAAGGGATAGATCTAGTGG 1937
||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||
Sbjct 1836 GGAGACTCTAACCGGAAGATCGAGTT-TGGATGATAGAAAGGAAGGGATAGATCTGGTGG 1894
Query 1938 TATGGGTGAATGACGTTATTTCAAAACAATGGACAGGTGAAGTGTTTGATTTGGAGCTTG 1997
||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1895 TATGGGTTAATGAAGTTATTGCAAAACAATGGACAGGTGAAGTGTTTGATTTGGAGCTTG 1954
Query 1998 TGAAAACTCCTAACGTTGAAGCAAAGTTGCTTCAGATGTTGCAGTTAGGAACAAGTTGTA 2057
|||| ||||||||| ||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 1955 TGAAGACTCCTAACATTGAATCAAAGTTACTTCAGATGTTGCAGTTAGGGACAAGTTGTG 2014
Query 2058 CGGCTATGGTTCCGGCAAAGAGACCGGATATGGTGAAAGTGGTTGAGACTTTGGAAGAGA 2117
|||||| ||||||||| |||||||| || |||||||||||| ||||||||||||| ||||
Sbjct 2015 CGGCTAGGGTTCCGGCGAAGAGACCAGAGATGGTGAAAGTGATTGAGACTTTGGAGGAGA 2074
Query 2118 TTGAGAGAGACTGATTAATAAATT 2141
||||||| |||||||||||| |||
Sbjct 2075 TTGAGAGGGACTGATTAATACATT 2098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84636524390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5