BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24110.1
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489268 jgi|Araly1|489268|fgenesh2_kg.6__2402__AT5G24110.1 1615 0.0
> Ahg489268 jgi|Araly1|489268|fgenesh2_kg.6__2402__AT5G24110.1
Length=1256
Score = 1615 bits (874), Expect = 0.0
Identities = 1027/1098 (94%), Gaps = 21/1098 (2%)
Strand=Plus/Plus
Query 1 ATGCAAAAATAAACATAGTAACAATACTTTAAACTA-TTTACACCACTTTAATCTTATTC 59
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGCAAAAATAAACATAGTAACAATACTTTAAACTATTTTACACCACTTTAATCTTATTC 60
Query 60 TCCACTCTTTGAACGTAATGGAGAAGAACCATAGTAGTGGAGAGTGGGAGAAGATGAAGA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCACTCTTTGAACGTAATGGAGAAGAACCATAGTAGTGGAGAGTGGGAGAAGATGAAGA 120
Query 120 ACGAGATCAACGAGCTAATGA-TAGAAGGAAGAGACTATGCACACCAGTTTGGATCAGCT 178
| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 121 AGGAGATCAACGAGCTAATGACT-GAAGGAAGAGACTATGCACACCAGTTTGGATCGGCT 179
Query 179 TCATCTCAAGAAACACGTGAACATTTAGCCAAAAAGATTCTTCAATCTTACCACAAGTCT 238
|||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct 180 TCATCTCAAGAAACACGTGAACATTTGGCCAAGAAGATTCTTGAATCTTACCACAAGTCT 239
Query 239 CTCACCATCATGAACTACTCCGGCGAACTTGACCAAGTTTCTCAGGGTGGAGGAAGCCCC 298
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 240 CTAACCATCATGAACTACTCCGGCGAACTCGACCAAGTTTCTCACGGTGGAGGAAGCCCC 299
Query 299 AAGAGCGATGATTCCGATCAAGAACCACTT---GTCATCAAGAGTTCGAAGAAGTCAATG 355
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 300 AAGAGCGATGATTCCGATCAAGAACCACTTCATGTCATCAAGAGTTCCAAGAAGTCAATG 359
Query 356 CCAAGGTGGAGTTCAAAAGTCAGAATTGCCCCTGGAGCTGGTGTTGATAGAACGCTGGAC 415
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 CCAAGGTGGACTTCAAAAGTCAGAATTGCCCCTGGAGCTGGTATTGATAGAACGCTGGAC 419
Query 416 GATGGATTCAGTTGGAGAAAGTACGGCCAGAAGGATATTCTCGGAGCCAAATTTCCAAGA 475
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 GATGGATTCAGTTGGAGAAAGTACGGCCAGAAGGATATCCTCGGAGCCAAATTTCCAAGA 479
Query 476 GGATACTATAGATGCACGTATAGAAAGTCTCAAGGATGTGAAGCCACTAAACAAGTCCAA 535
||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 480 GGATACTATCGATGCACGTATAGAAAATCTCAAGGATGTGAAGCCACCAAACAAGTCCAA 539
Query 536 AGATCTGATGAAAATCAGATGCTCCTTGAGATCAGTTACCGAGGAATACATTCTTGCTCT 595
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 540 AGATCTGACGAAAATCAGATGCTCTTTGAGATCAGTTACCGAGGAATACATTCTTGCTCC 599
Query 596 CAAGCTGCAAATGTCGGTACAA-CAATGCCGATACAAAACCTCGAACCGAACCAGACCCA 654
||||||||||||||| || ||| || | ||| ||||| | ||||||||||||||||| ||
Sbjct 600 CAAGCTGCAAATGTCCGTTCAAACA-TCCCGGTACAATATCTCGAACCGAACCAGACTCA 658
Query 655 AGAACACGGAAATCTTGACATGGTAAAGGAAAGTGTAGACAACTACAATCACCAAGCACA 714
|||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||
Sbjct 659 AGAACACGAAAATCTTGACATCGTGAAGGAAAGTCTAGACAACTACAATCACCAAGCACA 718
Query 715 TTTGCATCACAACCTTCACTATCCATTGT-CATCTACCCCAAATCTAGAGAATAACAATG 773
||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 719 TTTGCATGACAATTTTCACTATCCATTGTGC-TCTACCCCAAATCTAGAGAATAACAATG 777
Query 774 CCTATATGCTTCAAATGCGAGATCAAAACA-TCGAATATTTTGGATCTACGAGCTTCTCT 832
| |||||||||||| || ||||||| |||| | || | |||||||||||| || ||||||
Sbjct 778 CGTATATGCTTCAACTGAGAGATCACAACACT-GAGTTTTTTGGATCTACAAGTTTCTCT 836
Query 833 AGTGATCTAGGAACTAGTATCAACTACAATTTTCCAGCATCTGGCTCGGCTTCTCACTC- 891
||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 837 AGTGATCTAAGAACTAATATCAACTACAATTTTCCGGCATCTGGCTCGGCTTCTCACTCT 896
Query 892 AGCATCAAACTCTCCGTCCACCGTCCCTTTGGAATCCCCGTTTGAAAGCTATGATCCAAA 951
| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 897 A-CATCAAACTCTCCGTCCACCGTTCCTTTGGAATCCCCATTTGAAAGCTATGATCCAAA 955
Query 952 TCATCCATATGGAGGATTTGGTGGGTTCTATTCTTAGTTATCTACTTAAGGGAGGGACGG 1011
||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 956 TCATCCATATGGAGGGTTTGGTGGGTTCTATTCTTAGT-ATCCACTTAAGGGAGGGACGG 1014
Query 1012 AACTTTTTACATGACCTCTTGATTAAAGAGAGA----GTTTT-CATAATAGCTAATCAAT 1066
||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1015 AACTTTT-ACATGATCTCTTGATTAAAGAGAGATATAGTTTTTCATAATAGCTAATCAAT 1073
Query 1067 TTCCTATTCAAATATCCG 1084
|||| |||||||| ||||
Sbjct 1074 TTCCAATTCAAATTTCCG 1091
Score = 219 bits (118), Expect = 6e-56
Identities = 152/167 (91%), Gaps = 7/167 (4%)
Strand=Plus/Plus
Query 1129 GCTTATTTTCAGGTCTATGTTGAAATAAATGGATTTGTACTCGTAGGTATGATCCTTGTT 1188
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1091 GCTTATTTTCAGGTCTATGTTGAAATAAATGGATTTGTACTCGTACGTATGATCCTTGTT 1150
Query 1189 ATCTAGCTTATAGTCCATGGTTTTT-ACTTTTTGCCTTATGTTGTTGTAACACATTCGAG 1247
||||||||||||||||||||||||| ||||||| || ||||||||||||||| ||| ||
Sbjct 1151 ATCTAGCTTATAGTCCATGGTTTTTTACTTTTTACCATATGTTGTTGTAACATATTTGAA 1210
Query 1248 TTCTTA-TATTGCAAATTTGAGTCT---T-CTTTTAGCTATACAATT 1289
| ||| |||||||||||||||||| | ||||||||||||| |||
Sbjct 1211 T-CTTTCTATTGCAAATTTGAGTCTAGCTTCTTTTAGCTATACTATT 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48187367088
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5