BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24130.1
Length=1226
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489270 jgi|Araly1|489270|fgenesh2_kg.6__2404__AT5G24130.1 1722 0.0
> Ahg489270 jgi|Araly1|489270|fgenesh2_kg.6__2404__AT5G24130.1
Length=1136
Score = 1722 bits (932), Expect = 0.0
Identities = 1074/1143 (94%), Gaps = 8/1143 (1%)
Strand=Plus/Plus
Query 1 CAGTCTCTCTCTAAACGCATAATCTTACAATAAAATGGTGAAACTCGCGACGGCGCGTGA 60
||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1 CAGTCTCTCTCTAGACACATAATCTT-CAATCAAATGGTGAAACTCGCGACGGCGCGTGA 59
Query 61 GATTAGAACGTACGGCCCTCGGCTTGGGAGGAGCAGAGCCGAGTACATCAACGCAGGTCT 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 GATTAGAACGTACGGCCCTCGGCTAGGGAGGAGCAGAGCCGAGTACATCAACGCAGGTCT 119
Query 121 ATACTTGTTTGCAACCGTGGTGCTCATCGGCGGTTTCACAGCGACAGGATTCTCATGGGA 180
|||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct 120 ATACTTGTTTGCAACCGTAGCGCTCATCGGCGGTTTCACGGCGACAGGATTCTCATGGGA 179
Query 181 ACCAAGATCCGGCCTCGTCCTTATTCTCTTAGCTCTCGTTCTTATAACCGCCGTGAATGT 240
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 180 ACCAAGATCCGGCCTCGTCCTTATTCTCCTAGCTCTCGTTCTTATAACTGCCGTGAATGT 239
Query 241 TCATGATCTTGTGGCTCATCTAGCTGGAATCGATTACCGGTTAAGGTTAATGGAGTATGA 300
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TCATGATCTCGTGGCTCATCTAGCCGGAATCGATTACCGGTTAAGGTTAATGGAGTATGA 299
Query 301 TTTGCAACTGGGGCTAGTGGAATTTGCAGTCCCTCTGGTTCAGATAGCGGGTTCGGTAGT 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTGCAACTGGGGCTTGTGGAATTTGCAGTCCCTCTGGTTCAGATAGCGGGTTCGGTAGT 359
Query 361 GTTTTTCTTGGGAATCTTTTTCGTCTTCCATCAGGCTGAGACAAAACGTGGATACAGTGG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTTTTCTTGGGAATCTTTTTCGTCTTCCATCAGGCTGAGACAAAACGTGGATACAGTGG 419
Query 421 AAGAGAGCATCATGCATTAAACTTGCTGATAGCGGGTCCGTTACTTTGGTTGATAGGATC 480
||||||||||||||||||||||||||| || ||||||||||| |||||| ||||||||||
Sbjct 420 AAGAGAGCATCATGCATTAAACTTGCTTATTGCGGGTCCGTTGCTTTGGGTGATAGGATC 479
Query 481 GATTCACAACTCATGCCAAATCTACGAGAGAGCGGATAGTCATGTTCAAATTCTACAGCA 540
||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||||||
Sbjct 480 GATTCACAACTCATGCCAAATCTACCAGAGAGCAGACAGTCATGTCCAAATTCTACAGCA 539
Query 541 GTGTGTTTACATTCCTTTCTTGGTTGGATCCCTTCTATTCTTGGTTTCCGCAGTTCTCAA 600
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 540 GTGTGTTCACATTCCTTTCTTGGTTGGATCTCTTCTATTCTTGGTTTCGGCAGTTCTCAA 599
Query 601 TAGCCTCGAC-ATATCCGGGTCATCTCGTAGTGGATTGAAGCTTCTTGGGGAAAGATGGA 659
|||||||||| | |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 600 TAGCCTCGACCA-ATCCGGGTCATCTCACAGTGGCTTGAAGCTTCTTGGGGAAAGATGGG 658
Query 660 TTTGGCTTGGGATTTCCGGGGCTATATGTTTGTTTGTGGGAGGATTGCTGAACGTTGTTA 719
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 659 TTTGGCTTGGGATTGCCGGGGCTATATGTTTGTTTGTGGGAGGATTGATGAACGTTGTTA 718
Query 720 AGGTTTTTAACTTCGTCCAGATCTCTGGGCTCCGCCTCGAGAAACTACGGGGTGGAGCTC 779
|||||||||||||||| |||||| ||||||| |||||||||||||||||||| |||||||
Sbjct 719 AGGTTTTTAACTTCGTTCAGATCACTGGGCTACGCCTCGAGAAACTACGGGGCGGAGCTC 778
Query 780 AAGACCGACTTCTTGAAGGGAGAGAAGGATATCTCCCTCTTGTTGCTGAAGAAGAAAGAA 839
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AAGACCGGCTTCTTGAAGGGAGAGAAGGATATCTCCCTCTTGTTGCTGAAGAAGAAAGAA 838
Query 840 TAAGGAAAATGGAAGCTGATCACGAAGCTTCTAGTAGAGCCAAACCCCGGGCACACACAA 899
||||||||||||||||||| | ||||||||||||||| |||||||||| || ||| ||
Sbjct 839 TAAGGAAAATGGAAGCTGA-C--GAAGCTTCTAGTAGAACCAAACCCCGTGCCCACTTAA 895
Query 900 CCTCCAAAGCCGGAGAGGGAGCTACAGAGACCGTGGTGGTATCATCTCCGACACCATACA 959
|||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 896 CCTCCAAAGCTGGAGCGGGAGCTACAGAGACCGTGGTAGTATCATCTCCGACACCATACA 955
Query 960 AGGATGTTCTCGTTGGACAGATCTGAGGAAGATTAGTCATGTTTAAATGTTCTTTTGTAC 1019
||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||
Sbjct 956 AGGATGTTCTCGTTGGACAGAGCTGAGGAAGATTATTCATGTTTAAATGTTGTTTTGTAC 1015
Query 1020 TCCATATTTGTTTTTAGCTGCGGAGACCACATATTTTGCCGTTCAACATATGTTATGTGA 1079
|| ||||| ||||||| || || |||| ||| ||||||||||||| || | | |||| |
Sbjct 1016 TCTATATTCGTTTTTATCTACGAAGACAACAGATTTTGCCGTTCACCACAAGCTATG--A 1073
Query 1080 TTCGTTTCCTTTTTGGTCAGTCTTTATGAATATTGAAATAGGTTACAATACATCAAGACT 1139
||||||||||| ||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1074 TTCGTTTCCTTGTTGATCAGCCTTTATGAATATTGAAATATGTTACAATACATCAAGACT 1133
Query 1140 TTA 1142
|||
Sbjct 1134 TTA 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45785623317
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5