BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24130.1 Length=1226 Score E Sequences producing significant alignments: (Bits) Value Ahg489270 jgi|Araly1|489270|fgenesh2_kg.6__2404__AT5G24130.1 1722 0.0 > Ahg489270 jgi|Araly1|489270|fgenesh2_kg.6__2404__AT5G24130.1 Length=1136 Score = 1722 bits (932), Expect = 0.0 Identities = 1074/1143 (94%), Gaps = 8/1143 (1%) Strand=Plus/Plus Query 1 CAGTCTCTCTCTAAACGCATAATCTTACAATAAAATGGTGAAACTCGCGACGGCGCGTGA 60 ||||||||||||| || ||||||||| |||| |||||||||||||||||||||||||||| Sbjct 1 CAGTCTCTCTCTAGACACATAATCTT-CAATCAAATGGTGAAACTCGCGACGGCGCGTGA 59 Query 61 GATTAGAACGTACGGCCCTCGGCTTGGGAGGAGCAGAGCCGAGTACATCAACGCAGGTCT 120 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 60 GATTAGAACGTACGGCCCTCGGCTAGGGAGGAGCAGAGCCGAGTACATCAACGCAGGTCT 119 Query 121 ATACTTGTTTGCAACCGTGGTGCTCATCGGCGGTTTCACAGCGACAGGATTCTCATGGGA 180 |||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||| Sbjct 120 ATACTTGTTTGCAACCGTAGCGCTCATCGGCGGTTTCACGGCGACAGGATTCTCATGGGA 179 Query 181 ACCAAGATCCGGCCTCGTCCTTATTCTCTTAGCTCTCGTTCTTATAACCGCCGTGAATGT 240 |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 180 ACCAAGATCCGGCCTCGTCCTTATTCTCCTAGCTCTCGTTCTTATAACTGCCGTGAATGT 239 Query 241 TCATGATCTTGTGGCTCATCTAGCTGGAATCGATTACCGGTTAAGGTTAATGGAGTATGA 300 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 240 TCATGATCTCGTGGCTCATCTAGCCGGAATCGATTACCGGTTAAGGTTAATGGAGTATGA 299 Query 301 TTTGCAACTGGGGCTAGTGGAATTTGCAGTCCCTCTGGTTCAGATAGCGGGTTCGGTAGT 360 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TTTGCAACTGGGGCTTGTGGAATTTGCAGTCCCTCTGGTTCAGATAGCGGGTTCGGTAGT 359 Query 361 GTTTTTCTTGGGAATCTTTTTCGTCTTCCATCAGGCTGAGACAAAACGTGGATACAGTGG 420 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TTTTTTCTTGGGAATCTTTTTCGTCTTCCATCAGGCTGAGACAAAACGTGGATACAGTGG 419 Query 421 AAGAGAGCATCATGCATTAAACTTGCTGATAGCGGGTCCGTTACTTTGGTTGATAGGATC 480 ||||||||||||||||||||||||||| || ||||||||||| |||||| |||||||||| Sbjct 420 AAGAGAGCATCATGCATTAAACTTGCTTATTGCGGGTCCGTTGCTTTGGGTGATAGGATC 479 Query 481 GATTCACAACTCATGCCAAATCTACGAGAGAGCGGATAGTCATGTTCAAATTCTACAGCA 540 ||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||| Sbjct 480 GATTCACAACTCATGCCAAATCTACCAGAGAGCAGACAGTCATGTCCAAATTCTACAGCA 539 Query 541 GTGTGTTTACATTCCTTTCTTGGTTGGATCCCTTCTATTCTTGGTTTCCGCAGTTCTCAA 600 ||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 540 GTGTGTTCACATTCCTTTCTTGGTTGGATCTCTTCTATTCTTGGTTTCGGCAGTTCTCAA 599 Query 601 TAGCCTCGAC-ATATCCGGGTCATCTCGTAGTGGATTGAAGCTTCTTGGGGAAAGATGGA 659 |||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 600 TAGCCTCGACCA-ATCCGGGTCATCTCACAGTGGCTTGAAGCTTCTTGGGGAAAGATGGG 658 Query 660 TTTGGCTTGGGATTTCCGGGGCTATATGTTTGTTTGTGGGAGGATTGCTGAACGTTGTTA 719 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 659 TTTGGCTTGGGATTGCCGGGGCTATATGTTTGTTTGTGGGAGGATTGATGAACGTTGTTA 718 Query 720 AGGTTTTTAACTTCGTCCAGATCTCTGGGCTCCGCCTCGAGAAACTACGGGGTGGAGCTC 779 |||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||| Sbjct 719 AGGTTTTTAACTTCGTTCAGATCACTGGGCTACGCCTCGAGAAACTACGGGGCGGAGCTC 778 Query 780 AAGACCGACTTCTTGAAGGGAGAGAAGGATATCTCCCTCTTGTTGCTGAAGAAGAAAGAA 839 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 AAGACCGGCTTCTTGAAGGGAGAGAAGGATATCTCCCTCTTGTTGCTGAAGAAGAAAGAA 838 Query 840 TAAGGAAAATGGAAGCTGATCACGAAGCTTCTAGTAGAGCCAAACCCCGGGCACACACAA 899 ||||||||||||||||||| | ||||||||||||||| |||||||||| || ||| || Sbjct 839 TAAGGAAAATGGAAGCTGA-C--GAAGCTTCTAGTAGAACCAAACCCCGTGCCCACTTAA 895 Query 900 CCTCCAAAGCCGGAGAGGGAGCTACAGAGACCGTGGTGGTATCATCTCCGACACCATACA 959 |||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 896 CCTCCAAAGCTGGAGCGGGAGCTACAGAGACCGTGGTAGTATCATCTCCGACACCATACA 955 Query 960 AGGATGTTCTCGTTGGACAGATCTGAGGAAGATTAGTCATGTTTAAATGTTCTTTTGTAC 1019 ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| Sbjct 956 AGGATGTTCTCGTTGGACAGAGCTGAGGAAGATTATTCATGTTTAAATGTTGTTTTGTAC 1015 Query 1020 TCCATATTTGTTTTTAGCTGCGGAGACCACATATTTTGCCGTTCAACATATGTTATGTGA 1079 || ||||| ||||||| || || |||| ||| ||||||||||||| || | | |||| | Sbjct 1016 TCTATATTCGTTTTTATCTACGAAGACAACAGATTTTGCCGTTCACCACAAGCTATG--A 1073 Query 1080 TTCGTTTCCTTTTTGGTCAGTCTTTATGAATATTGAAATAGGTTACAATACATCAAGACT 1139 ||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 1074 TTCGTTTCCTTGTTGATCAGCCTTTATGAATATTGAAATATGTTACAATACATCAAGACT 1133 Query 1140 TTA 1142 ||| Sbjct 1134 TTA 1136 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45785623317 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5